Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.34975 * 116.99816 * 2 1 4 4 O 1.21704 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.41470 * 120.00232 * 179.97438 * 3 2 1 6 6 S 1.75815 * 125.48348 * 4.84256 * 5 3 2 7 7 C 1.70567 * 91.69105 * 180.02562 * 6 5 3 8 8 C 1.33583 * 111.20365 * 359.74456 * 7 6 5 9 9 C 1.50700 * 122.45118 * 180.23576 * 8 7 6 10 10 C 1.37540 * 125.48872 * 184.86911 * 5 3 2 11 11 N 1.39500 * 123.50984 * 359.95061 * 10 5 3 12 12 C 1.34773 * 119.99639 * 132.40399 * 11 10 5 13 13 O 1.21288 * 120.00306 * 355.16678 * 12 11 10 14 14 C 1.50706 * 119.99774 * 175.16659 * 12 11 10 15 15 H 1.08994 * 109.47102 * 320.00242 * 14 12 11 16 16 N 1.46896 * 109.47011 * 199.99663 * 14 12 11 17 17 C 1.53003 * 109.46786 * 79.99952 * 14 12 11 18 18 C 1.53002 * 109.46710 * 184.99704 * 17 14 12 19 19 C 1.53005 * 109.47078 * 179.97438 * 18 17 14 20 20 C 1.50695 * 109.47146 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00273 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99852 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47091 * 119.99645 * 24 22 20 27 27 H 1.48497 * 109.47107 * 239.99467 * 24 22 20 28 28 H 1.08990 * 109.47355 * 300.00420 * 1 2 3 29 29 H 1.08997 * 109.46704 * 60.01034 * 1 2 3 30 30 H 1.09003 * 109.46858 * 179.97438 * 1 2 3 31 31 H 1.08001 * 124.39850 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.47051 * 278.62266 * 9 8 7 33 33 H 1.09000 * 109.47000 * 38.62378 * 9 8 7 34 34 H 1.08999 * 109.46959 * 158.62118 * 9 8 7 35 35 H 0.96996 * 119.99963 * 312.40580 * 11 10 5 36 36 H 1.00900 * 110.99835 * 176.04388 * 16 14 12 37 37 H 1.00898 * 111.00703 * 300.00220 * 16 14 12 38 38 H 1.08999 * 109.47189 * 65.00222 * 17 14 12 39 39 H 1.08996 * 109.47369 * 305.00016 * 17 14 12 40 40 H 1.08999 * 109.46871 * 60.00323 * 18 17 14 41 41 H 1.08996 * 109.47460 * 300.00257 * 18 17 14 42 42 H 1.08996 * 109.47194 * 300.00430 * 19 18 17 43 43 H 1.08999 * 109.46997 * 60.00411 * 19 18 17 44 44 H 0.97010 * 119.99952 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2027 0.0000 4 8 1.3789 2.2233 -0.0005 5 6 3.4545 1.2768 0.0005 6 16 4.5485 -0.0943 -0.1196 7 6 5.9145 0.9239 -0.0384 8 6 5.5556 2.2064 0.0659 9 6 6.5632 3.3238 0.1503 10 6 4.1934 2.4330 0.0957 11 7 3.6260 3.7027 0.2047 12 6 4.0740 4.5627 1.1408 13 8 4.9083 4.2037 1.9446 14 6 3.5381 5.9705 1.1887 15 1 3.4245 6.3507 0.1736 16 7 4.4743 6.8258 1.9302 17 6 2.1783 5.9749 1.8900 18 6 1.5776 7.3807 1.8289 19 6 0.2175 7.3851 2.5297 20 6 -0.3745 8.7696 2.4689 21 1 0.1655 9.5668 1.9798 22 6 -1.6051 9.0188 3.0387 23 7 -2.2624 8.0481 3.6347 24 14 -2.3385 10.7352 2.9640 25 1 -1.4072 11.6406 2.2443 26 1 -3.6373 10.6876 2.2455 27 1 -2.5540 11.2418 4.3431 28 1 -0.3633 0.5138 0.8898 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 6.9368 0.5772 -0.0719 32 1 6.9258 3.4095 1.1746 33 1 7.4000 3.1094 -0.5146 34 1 6.0928 4.2606 -0.1483 35 1 2.9092 3.9666 -0.3931 36 1 4.1698 7.7877 1.9214 37 1 4.5966 6.4938 2.8752 38 1 2.3056 5.6792 2.9314 39 1 1.5103 5.2723 1.3920 40 1 1.4502 7.6764 0.7875 41 1 2.2456 8.0833 2.3270 42 1 -0.4504 6.6825 2.0312 43 1 0.3444 7.0892 3.5710 44 1 -3.1284 8.2234 4.0353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578891896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -100.483509 kcal Electronic energy + Delta-G solvation = -27323.707325 eV Core-core repulsion = 23367.474457 eV Total energy + Delta-G solvation = -3956.232869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20025 -40.29298 -38.31699 -36.62704 -35.96066 -34.28900 -33.35170 -31.52089 -31.24674 -28.50169 -28.19631 -27.29568 -25.74083 -24.36241 -22.69806 -21.42136 -20.70808 -20.15231 -19.19166 -18.87579 -17.64965 -17.33512 -16.76553 -16.44968 -16.29710 -15.69932 -15.16592 -14.87894 -14.70961 -14.49756 -14.32192 -14.11314 -13.74291 -13.65732 -13.44391 -13.31881 -12.77452 -12.48301 -12.24881 -12.18743 -12.13118 -12.02936 -11.76785 -11.31604 -11.21953 -10.93415 -10.82999 -10.79663 -10.72407 -10.55642 -10.30093 -9.90983 -9.75934 -9.40365 -9.12145 -9.01027 -8.54666 -8.37005 -8.34706 -6.01609 -4.04553 -0.02891 1.11720 1.53897 1.86160 2.47105 2.57375 2.79384 3.00248 3.29559 3.37095 3.40906 4.41570 4.44563 4.69764 4.72829 4.79452 4.87136 4.96858 5.05811 5.17079 5.19628 5.28687 5.29938 5.34210 5.42830 5.49594 5.61966 5.77881 5.93105 5.97594 6.12637 6.15752 6.27039 6.35673 6.58678 6.75374 7.03289 7.07025 7.29009 7.52338 7.54987 7.64986 7.77823 7.97812 8.05449 8.39391 9.02879 9.59816 11.09626 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.002745 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.563845 B =10198.695590 C =12035.293594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.541 3.459 4 O -0.496 6.496 5 C -0.313 4.313 6 S 0.260 5.740 7 C -0.218 4.218 8 C -0.113 4.113 9 C -0.084 4.084 10 C 0.247 3.753 11 N -0.656 5.656 12 C 0.528 3.472 13 O -0.508 6.508 14 C 0.080 3.920 15 H 0.103 0.897 16 N -0.829 5.829 17 C -0.149 4.149 18 C -0.107 4.107 19 C 0.022 3.978 20 C -0.521 4.521 21 H 0.055 0.945 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.176 0.824 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.422 0.578 36 H 0.354 0.646 37 H 0.349 0.651 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.666 -18.928 -10.781 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.387 3.613 4 O -0.386 6.386 5 C -0.434 4.434 6 S 0.529 5.471 7 C -0.357 4.357 8 C -0.127 4.127 9 C -0.143 4.143 10 C 0.135 3.865 11 N -0.306 5.306 12 C 0.316 3.684 13 O -0.380 6.380 14 C -0.035 4.035 15 H 0.121 0.879 16 N -0.361 5.361 17 C -0.189 4.189 18 C -0.145 4.145 19 C -0.015 4.015 20 C -0.559 4.559 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.719 3.281 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.193 0.807 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.262 0.738 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.033 0.967 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.216 -20.675 -10.770 28.397 hybrid contribution -1.790 2.708 0.517 3.287 sum 14.426 -17.967 -10.254 25.220 Atomic orbital electron populations 1.22930 0.76162 1.03725 1.02964 1.86152 1.23835 1.32363 1.84901 1.18178 0.87093 0.82107 0.73882 1.90933 1.66115 1.35373 1.46178 1.22287 0.95293 0.98259 1.27539 1.83087 0.91704 1.05482 1.66811 1.25110 1.05519 0.97466 1.07560 1.18593 0.93146 0.96061 1.04900 1.20554 0.95851 0.94812 1.03103 1.16798 0.90696 0.84546 0.94501 1.43341 1.39439 1.11081 1.36702 1.20984 0.80799 0.87212 0.79416 1.90687 1.31297 1.77898 1.38157 1.21401 0.92074 0.89271 1.00798 0.87881 1.58704 1.49727 1.06145 1.21563 1.22438 0.94479 1.01193 1.00772 1.21642 0.99580 0.92442 1.00822 1.19080 0.89967 0.97091 0.95409 1.21279 1.03218 0.95506 1.35940 0.92627 1.25039 0.97174 0.96956 0.95345 1.69979 1.14307 1.31724 1.37367 0.86545 0.79117 0.84668 0.77727 1.19714 1.21009 1.21019 0.91706 0.91891 0.87957 0.80658 0.89721 0.91951 0.91779 0.73836 0.83040 0.83675 0.91737 0.91085 0.92985 0.93335 0.96535 0.96740 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.45 101.05 1.06 1.39 16 2 O -0.36 -4.08 10.23 -41.25 -0.42 -4.50 16 3 C 0.54 7.27 7.72 31.96 0.25 7.52 16 4 O -0.50 -7.81 14.90 -19.42 -0.29 -8.10 16 5 C -0.31 -3.82 6.28 -38.61 -0.24 -4.06 16 6 S 0.26 2.22 22.82 -107.50 -2.45 -0.23 16 7 C -0.22 -1.85 10.66 29.10 0.31 -1.54 16 8 C -0.11 -1.25 5.40 -106.29 -0.57 -1.82 16 9 C -0.08 -0.90 8.31 36.01 0.30 -0.60 16 10 C 0.25 3.16 5.96 -84.67 -0.50 2.65 16 11 N -0.66 -8.67 4.42 -10.46 -0.05 -8.72 16 12 C 0.53 7.68 5.51 -10.98 -0.06 7.62 16 13 O -0.51 -8.38 13.27 5.55 0.07 -8.31 16 14 C 0.08 1.11 3.21 -68.86 -0.22 0.89 16 15 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 16 N -0.83 -11.17 8.94 -5.65 -0.05 -11.22 16 17 C -0.15 -2.50 4.84 -26.73 -0.13 -2.63 16 18 C -0.11 -2.09 4.92 -26.73 -0.13 -2.22 16 19 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 20 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 24 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.08 1.02 7.34 -51.93 -0.38 0.64 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.76 6.46 -51.93 -0.34 0.42 16 35 H 0.42 5.22 7.77 -40.82 -0.32 4.91 16 36 H 0.35 4.51 7.55 -39.29 -0.30 4.21 16 37 H 0.35 4.89 8.58 -39.29 -0.34 4.55 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.90 6.87 -51.93 -0.36 0.54 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -33.89 381.59 -8.44 -42.32 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.21 Total: 8.66 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.50 Total: -5.91 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.64 Total: -46.36 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.64 Total: -20.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.45 Total: -0.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.89 -8.44 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578891896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.159 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds