Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.34975 * 116.99816 * 2 1 4 4 O 1.21704 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.41470 * 120.00232 * 179.97438 * 3 2 1 6 6 S 1.75815 * 125.48348 * 4.84256 * 5 3 2 7 7 C 1.70567 * 91.69105 * 180.02562 * 6 5 3 8 8 C 1.33583 * 111.20365 * 359.74456 * 7 6 5 9 9 C 1.50700 * 122.45118 * 180.23576 * 8 7 6 10 10 C 1.37540 * 125.48872 * 184.86911 * 5 3 2 11 11 N 1.39500 * 123.50984 * 359.95061 * 10 5 3 12 12 C 1.34773 * 119.99639 * 132.40399 * 11 10 5 13 13 O 1.21288 * 120.00306 * 355.16678 * 12 11 10 14 14 C 1.50706 * 119.99774 * 175.16659 * 12 11 10 15 15 H 1.08994 * 109.47102 * 320.00242 * 14 12 11 16 16 N 1.46896 * 109.47011 * 199.99663 * 14 12 11 17 17 C 1.53003 * 109.46786 * 79.99952 * 14 12 11 18 18 C 1.53002 * 109.46710 * 184.99704 * 17 14 12 19 19 C 1.53005 * 109.47078 * 179.97438 * 18 17 14 20 20 C 1.50695 * 109.47146 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00273 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99852 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47253 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47091 * 119.99645 * 24 22 20 27 27 H 1.48497 * 109.47107 * 239.99467 * 24 22 20 28 28 H 1.08990 * 109.47355 * 300.00420 * 1 2 3 29 29 H 1.08997 * 109.46704 * 60.01034 * 1 2 3 30 30 H 1.09003 * 109.46858 * 179.97438 * 1 2 3 31 31 H 1.08001 * 124.39850 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.47051 * 278.62266 * 9 8 7 33 33 H 1.09000 * 109.47000 * 38.62378 * 9 8 7 34 34 H 1.08999 * 109.46959 * 158.62118 * 9 8 7 35 35 H 0.96996 * 119.99963 * 312.40580 * 11 10 5 36 36 H 1.00900 * 110.99835 * 176.04388 * 16 14 12 37 37 H 1.00898 * 111.00703 * 300.00220 * 16 14 12 38 38 H 1.08999 * 109.47189 * 65.00222 * 17 14 12 39 39 H 1.08996 * 109.47369 * 305.00016 * 17 14 12 40 40 H 1.08999 * 109.46871 * 60.00323 * 18 17 14 41 41 H 1.08996 * 109.47460 * 300.00257 * 18 17 14 42 42 H 1.08996 * 109.47194 * 300.00430 * 19 18 17 43 43 H 1.08999 * 109.46997 * 60.00411 * 19 18 17 44 44 H 0.97010 * 119.99952 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2027 0.0000 4 8 1.3789 2.2233 -0.0005 5 6 3.4545 1.2768 0.0005 6 16 4.5485 -0.0943 -0.1196 7 6 5.9145 0.9239 -0.0384 8 6 5.5556 2.2064 0.0659 9 6 6.5632 3.3238 0.1503 10 6 4.1934 2.4330 0.0957 11 7 3.6260 3.7027 0.2047 12 6 4.0740 4.5627 1.1408 13 8 4.9083 4.2037 1.9446 14 6 3.5381 5.9705 1.1887 15 1 3.4245 6.3507 0.1736 16 7 4.4743 6.8258 1.9302 17 6 2.1783 5.9749 1.8900 18 6 1.5776 7.3807 1.8289 19 6 0.2175 7.3851 2.5297 20 6 -0.3745 8.7696 2.4689 21 1 0.1655 9.5668 1.9798 22 6 -1.6051 9.0188 3.0387 23 7 -2.2624 8.0481 3.6347 24 14 -2.3385 10.7352 2.9640 25 1 -1.4072 11.6406 2.2443 26 1 -3.6373 10.6876 2.2455 27 1 -2.5540 11.2418 4.3431 28 1 -0.3633 0.5138 0.8898 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 6.9368 0.5772 -0.0719 32 1 6.9258 3.4095 1.1746 33 1 7.4000 3.1094 -0.5146 34 1 6.0928 4.2606 -0.1483 35 1 2.9092 3.9666 -0.3931 36 1 4.1698 7.7877 1.9214 37 1 4.5966 6.4938 2.8752 38 1 2.3056 5.6792 2.9314 39 1 1.5103 5.2723 1.3920 40 1 1.4502 7.6764 0.7875 41 1 2.2456 8.0833 2.3270 42 1 -0.4504 6.6825 2.0312 43 1 0.3444 7.0892 3.5710 44 1 -3.1284 8.2234 4.0353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578891896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -123.723862 kcal Electronic energy + Delta-G solvation = -27324.715103 eV Core-core repulsion = 23367.474457 eV Total energy + Delta-G solvation = -3957.240646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.18060 -41.30679 -39.29527 -37.62611 -37.34203 -35.35161 -35.22415 -33.03077 -32.40859 -29.60786 -29.30503 -28.35528 -27.12429 -25.51103 -24.28251 -22.35526 -22.09573 -21.57604 -20.12061 -19.74202 -18.76366 -18.49355 -18.32888 -17.68704 -17.32503 -16.68812 -16.51870 -16.32376 -16.05701 -15.87964 -15.38621 -15.01981 -14.80436 -14.70288 -14.47790 -14.35097 -14.30412 -13.79933 -13.71571 -13.48307 -13.08824 -12.98731 -12.96227 -12.83197 -12.60892 -12.43026 -12.38196 -12.08046 -11.83848 -11.79449 -11.55287 -11.48859 -11.32150 -11.20849 -10.88160 -10.59369 -9.84023 -9.74507 -9.14566 -8.22271 -6.34186 -0.88612 0.34326 0.78932 0.99553 1.38375 1.38968 1.39472 1.52584 1.67414 1.81456 2.02539 2.39121 3.11062 3.48046 3.60959 3.81327 3.86888 3.90832 4.00401 4.11170 4.27729 4.28669 4.34457 4.41444 4.48713 4.56392 4.68257 4.69932 4.71518 4.82531 4.95298 5.13364 5.15268 5.19986 5.23664 5.27169 5.41997 5.48977 5.68619 5.81983 5.96780 6.20531 6.22873 6.45893 6.55580 6.83934 6.96243 7.35790 8.89899 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.002745 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.563845 B =10198.695590 C =12035.293594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.538 3.462 4 O -0.533 6.533 5 C -0.349 4.349 6 S 0.331 5.669 7 C -0.198 4.198 8 C -0.141 4.141 9 C -0.077 4.077 10 C 0.226 3.774 11 N -0.653 5.653 12 C 0.529 3.471 13 O -0.530 6.530 14 C 0.090 3.910 15 H 0.124 0.876 16 N -0.824 5.824 17 C -0.136 4.136 18 C -0.092 4.092 19 C 0.023 3.977 20 C -0.540 4.540 21 H 0.066 0.934 22 C -0.005 4.005 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.258 1.258 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.139 0.861 31 H 0.213 0.787 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.423 0.577 36 H 0.360 0.640 37 H 0.347 0.653 38 H 0.048 0.952 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.062 0.938 42 H -0.015 1.015 43 H -0.016 1.016 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.332 -19.437 -12.066 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.386 3.614 4 O -0.425 6.425 5 C -0.469 4.469 6 S 0.601 5.399 7 C -0.337 4.337 8 C -0.154 4.154 9 C -0.136 4.136 10 C 0.113 3.887 11 N -0.301 5.301 12 C 0.317 3.683 13 O -0.405 6.405 14 C -0.025 4.025 15 H 0.142 0.858 16 N -0.356 5.356 17 C -0.176 4.176 18 C -0.130 4.130 19 C -0.014 4.014 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.202 4.202 23 N -0.577 5.577 24 Si 0.791 3.209 25 H -0.181 1.181 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.157 0.843 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.263 0.737 36 H 0.176 0.824 37 H 0.160 0.840 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.895 -21.211 -12.080 30.267 hybrid contribution -2.305 2.680 0.909 3.650 sum 15.590 -18.532 -11.171 26.669 Atomic orbital electron populations 1.23177 0.75040 1.05892 1.02238 1.86147 1.24962 1.31363 1.84493 1.18502 0.87735 0.82111 0.73077 1.90905 1.67055 1.36474 1.48110 1.22495 0.95422 1.00102 1.28912 1.82842 0.89834 1.02974 1.64287 1.25604 1.07444 0.96529 1.04106 1.18675 0.92400 0.97292 1.07031 1.20453 0.96448 0.94115 1.02562 1.17151 0.91731 0.84267 0.95592 1.43240 1.39147 1.11486 1.36254 1.20957 0.80591 0.87396 0.79384 1.90670 1.32474 1.78287 1.39071 1.21300 0.90129 0.89640 1.01436 0.85830 1.58715 1.49172 1.06350 1.21387 1.22239 0.96066 0.99113 1.00184 1.21419 0.96395 0.94480 1.00685 1.19000 0.92864 0.95544 0.93976 1.21747 1.03705 0.96575 1.35801 0.91595 1.26051 0.97785 1.01552 0.94820 1.70127 1.14849 1.34315 1.38386 0.85365 0.78328 0.79189 0.77971 1.18134 1.20494 1.20515 0.93137 0.91988 0.84286 0.77035 0.91460 0.89311 0.93525 0.73731 0.82417 0.83955 0.93298 0.92198 0.91800 0.91911 0.99615 0.99747 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.45 113.37 1.18 1.73 16 2 O -0.35 -7.97 10.23 -58.93 -0.60 -8.58 16 3 C 0.54 14.71 7.72 68.62 0.53 15.24 16 4 O -0.53 -17.65 14.90 19.17 0.29 -17.36 16 5 C -0.35 -8.36 6.28 22.90 0.14 -8.22 16 6 S 0.33 4.80 22.82 -56.49 -1.29 3.51 16 7 C -0.20 -2.75 10.66 66.76 0.71 -2.04 16 8 C -0.14 -2.92 5.40 -20.95 -0.11 -3.04 16 9 C -0.08 -1.56 8.31 71.24 0.59 -0.97 16 10 C 0.23 5.73 5.96 37.73 0.22 5.96 16 11 N -0.65 -17.68 4.42 -305.39 -1.35 -19.03 16 12 C 0.53 15.63 5.51 87.66 0.48 16.11 16 13 O -0.53 -17.77 13.27 -3.05 -0.04 -17.81 16 14 C 0.09 2.51 3.21 44.17 0.14 2.65 16 15 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 16 N -0.82 -21.72 8.94 -171.80 -1.54 -23.26 16 17 C -0.14 -4.69 4.84 30.60 0.15 -4.55 16 18 C -0.09 -3.63 4.92 30.60 0.15 -3.48 16 19 C 0.02 1.25 4.97 29.85 0.15 1.40 16 20 C -0.54 -30.88 9.11 25.60 0.23 -30.64 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 22 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 23 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 24 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.07 1.59 7.34 -2.39 -0.02 1.57 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.09 6.46 -2.39 -0.02 1.07 16 35 H 0.42 10.95 7.77 -92.71 -0.72 10.23 16 36 H 0.36 8.73 7.55 -89.69 -0.68 8.05 16 37 H 0.35 9.67 8.58 -89.70 -0.77 8.90 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 2.29 6.87 -2.39 -0.02 2.27 16 42 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 44 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -75.91 381.59 1.71 -74.20 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -1.11 Total: 29.41 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 5.04 Total: -9.66 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -2.60 Total: -100.33 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.36 Total: -43.75 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.29 Total: 3.51 kcal Total: -75.91 1.71 -74.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578891896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.526 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds