Wall clock time and date at job start Sat Apr 11 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46895 * 2 1 4 4 C 1.33390 * 125.20239 * 90.00348 * 3 2 1 5 5 C 1.38424 * 114.91897 * 179.78989 * 4 3 2 6 6 C 1.33391 * 114.92503 * 0.42997 * 5 4 3 7 7 C 1.50691 * 125.20822 * 179.85916 * 6 5 4 8 8 N 1.46501 * 109.47036 * 89.71462 * 7 6 5 9 9 C 1.34782 * 120.00125 * 179.97438 * 8 7 6 10 10 O 1.21273 * 119.99686 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00096 * 180.02562 * 9 8 7 12 12 N 1.46495 * 109.47173 * 180.02562 * 11 9 8 13 13 C 1.36935 * 120.00669 * 89.99834 * 12 11 9 14 14 H 1.08001 * 120.00320 * 157.80101 * 13 12 11 15 15 C 1.38815 * 119.99715 * 337.80573 * 13 12 11 16 16 N 1.31615 * 119.99980 * 7.73440 * 15 13 12 17 17 Si 1.86803 * 119.99999 * 187.72960 * 15 13 12 18 18 H 1.48502 * 109.47092 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46894 * 119.99958 * 17 15 13 20 20 H 1.48499 * 109.47134 * 240.00096 * 17 15 13 21 21 C 1.46506 * 119.99764 * 269.99833 * 12 11 9 22 22 C 1.53005 * 109.46815 * 94.33684 * 21 12 11 23 23 C 1.50705 * 109.47177 * 179.97438 * 22 21 12 24 24 O 1.20825 * 119.99568 * 0.02562 * 23 22 21 25 25 O 1.34224 * 120.00087 * 179.97438 * 23 22 21 26 26 S 1.75885 * 109.58884 * 359.59290 * 6 5 4 27 27 H 1.09006 * 109.47307 * 59.99619 * 1 2 3 28 28 H 1.08996 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47187 * 299.99925 * 1 2 3 30 30 H 1.08999 * 109.47187 * 240.00075 * 2 1 3 31 31 H 1.08998 * 109.46894 * 119.99891 * 2 1 3 32 32 H 1.07998 * 122.54019 * 0.02562 * 4 3 2 33 33 H 1.08005 * 122.53958 * 180.27253 * 5 4 3 34 34 H 1.09005 * 109.46977 * 329.71851 * 7 6 5 35 35 H 1.08995 * 109.47481 * 209.71577 * 7 6 5 36 36 H 0.96999 * 120.00338 * 0.02562 * 8 7 6 37 37 H 1.09005 * 109.47166 * 300.00617 * 11 9 8 38 38 H 1.09005 * 109.47054 * 60.00546 * 11 9 8 39 39 H 0.97000 * 120.00349 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.47257 * 214.33641 * 21 12 11 41 41 H 1.09002 * 109.47073 * 334.34042 * 21 12 11 42 42 H 1.08994 * 109.47173 * 300.00008 * 22 21 12 43 43 H 1.09002 * 109.47008 * 60.00318 * 22 21 12 44 44 H 0.96702 * 116.99549 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2887 2.1458 1.0900 5 6 2.7469 3.4284 0.8428 6 6 2.8542 3.7481 -0.4477 7 6 3.3247 5.0783 -0.9771 8 7 4.7793 5.0486 -1.1487 9 6 5.4252 6.1360 -1.6147 10 8 4.8023 7.1390 -1.8914 11 6 6.9214 6.1053 -1.7917 12 7 7.3789 7.3984 -2.3062 13 6 7.7321 8.3953 -1.4365 14 1 8.3878 9.1892 -1.7624 15 6 7.2475 8.3855 -0.1357 16 7 6.5753 7.3447 0.3083 17 14 7.5494 9.8495 0.9847 18 1 8.3240 10.8826 0.2512 19 1 6.2478 10.4201 1.4151 20 1 8.3160 9.4097 2.1780 21 6 7.4585 7.6251 -3.7514 22 6 6.1661 8.2853 -4.2360 23 6 6.2481 8.5191 -5.7225 24 8 7.2384 8.1908 -6.3319 25 8 5.2206 9.0910 -6.3697 26 16 2.3697 2.3771 -1.4372 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1528 1.7600 2.0895 33 1 2.9962 4.1189 1.6350 34 1 3.0581 5.8650 -0.2713 35 1 2.8495 5.2757 -1.9379 36 1 5.2776 4.2463 -0.9277 37 1 7.3971 5.9080 -0.8310 38 1 7.1878 5.3184 -2.4974 39 1 6.2370 7.3376 1.2173 40 1 8.3039 8.2769 -3.9710 41 1 7.5928 6.6714 -4.2619 42 1 5.3206 7.6335 -4.0165 43 1 6.0318 9.2390 -3.7255 44 1 5.3194 9.2201 -7.3230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597527835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:25 Heat of formation + Delta-G solvation = -77.447396 kcal Electronic energy + Delta-G solvation = -27092.811784 eV Core-core repulsion = 23137.577836 eV Total energy + Delta-G solvation = -3955.233948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.74752 -38.61701 -37.92312 -35.94363 -35.42678 -34.45907 -33.02262 -32.04025 -30.00984 -29.29386 -27.06469 -25.55447 -24.68793 -23.23013 -22.23088 -21.67397 -20.01858 -19.38677 -18.82699 -17.68966 -17.24837 -16.77356 -16.12946 -15.65848 -15.50322 -15.31188 -14.88263 -14.74913 -14.31365 -14.21143 -13.87575 -13.58542 -13.27028 -13.05074 -12.83995 -12.54892 -12.32997 -12.23994 -12.06478 -11.95512 -11.78821 -11.48046 -11.42861 -11.15971 -11.13735 -10.98964 -10.93675 -10.66398 -10.50208 -10.16743 -10.09106 -9.95268 -9.85175 -8.90276 -8.65363 -8.44681 -8.19794 -8.05014 -6.91740 -5.86974 -3.27976 0.94846 1.60202 2.01777 2.70443 2.73096 3.35719 3.45061 3.45595 3.59188 4.20951 4.33219 4.54651 4.56411 4.81264 4.92918 5.03848 5.26075 5.36808 5.44087 5.46122 5.55185 5.58836 5.74000 5.78487 5.82892 5.91570 5.93618 6.03729 6.17394 6.21645 6.33365 6.38508 6.47974 6.56011 6.69495 6.72428 6.84559 7.06061 7.31257 7.42457 7.71161 8.25225 8.35783 8.64576 9.12175 9.66428 9.79839 10.18971 11.19392 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.003103 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.163004 B = 9022.380388 C =11053.204790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C -0.182 4.182 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.182 4.182 7 C 0.199 3.801 8 N -0.744 5.744 9 C 0.533 3.467 10 O -0.542 6.542 11 C 0.162 3.838 12 N -0.572 5.572 13 C -0.248 4.248 14 H 0.077 0.923 15 C 0.011 3.989 16 N -0.906 5.906 17 Si 0.910 3.090 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.292 1.292 21 C 0.164 3.836 22 C -0.132 4.132 23 C 0.477 3.523 24 O -0.532 6.532 25 O -0.524 6.524 26 S 0.101 5.899 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.389 0.611 37 H 0.122 0.878 38 H 0.029 0.971 39 H 0.254 0.746 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -13.148 -1.900 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.299 4.299 4 C -0.167 4.167 5 C -0.152 4.152 6 C -0.299 4.299 7 C 0.073 3.927 8 N -0.400 5.400 9 C 0.320 3.680 10 O -0.417 6.417 11 C 0.032 3.968 12 N -0.290 5.290 13 C -0.376 4.376 14 H 0.095 0.905 15 C -0.186 4.186 16 N -0.552 5.552 17 Si 0.741 3.259 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.219 1.219 21 C 0.037 3.963 22 C -0.172 4.172 23 C 0.321 3.679 24 O -0.421 6.421 25 O -0.335 6.335 26 S 0.365 5.635 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.221 0.779 37 H 0.139 0.861 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -9.661 -12.767 -3.239 16.335 hybrid contribution 0.070 0.898 1.884 2.088 sum -9.591 -11.869 -1.355 15.320 Atomic orbital electron populations 1.21791 0.94480 1.01772 1.02508 1.20070 0.96035 0.89925 1.03052 1.24511 1.08659 1.00714 0.96038 1.20051 1.03328 0.94244 0.99077 1.20175 1.01932 0.96948 0.96189 1.24659 1.08741 1.00102 0.96427 1.19396 0.83541 0.89838 0.99928 1.46266 1.05299 1.17319 1.71078 1.22064 0.91337 0.81083 0.73497 1.90474 1.68616 1.31311 1.51337 1.20813 0.89462 0.86106 1.00381 1.43836 1.74060 1.11395 0.99719 1.19311 1.22653 1.03642 0.92033 0.90523 1.24941 0.97816 0.97623 0.98206 1.69662 1.40811 1.28127 1.16592 0.86092 0.77202 0.82463 0.80157 1.20417 1.21661 1.21881 1.20751 0.93086 0.97892 0.84604 1.22528 1.05228 1.05605 0.83853 1.24566 0.79136 0.71913 0.92274 1.90640 1.32594 1.49203 1.69672 1.84680 1.46242 1.74927 1.27608 1.84260 1.64719 1.05109 1.09377 0.92449 0.92207 0.92330 0.90927 0.90182 0.84666 0.84129 0.90616 0.91993 0.77860 0.86071 0.95273 0.93485 0.92705 0.93360 0.87392 0.87817 0.74675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.05 -0.41 6.43 -27.88 -0.18 -0.59 16 3 C -0.18 -1.94 5.76 -36.00 -0.21 -2.14 16 4 C -0.14 -1.52 10.05 -41.21 -0.41 -1.94 16 5 C -0.12 -1.57 10.05 -41.21 -0.41 -1.98 16 6 C -0.18 -2.51 5.88 -36.01 -0.21 -2.72 16 7 C 0.20 3.30 6.16 -5.20 -0.03 3.27 16 8 N -0.74 -13.44 5.55 -61.48 -0.34 -13.78 16 9 C 0.53 11.76 5.79 -10.98 -0.06 11.69 16 10 O -0.54 -13.82 13.88 5.56 0.08 -13.75 16 11 C 0.16 3.59 5.47 -5.20 -0.03 3.56 16 12 N -0.57 -13.59 2.07 -174.61 -0.36 -13.95 16 13 C -0.25 -6.45 9.70 -15.06 -0.15 -6.60 16 14 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 15 C 0.01 0.30 5.41 -17.43 -0.09 0.20 16 16 N -0.91 -23.91 8.21 55.49 0.46 -23.45 16 17 Si 0.91 21.53 29.56 -169.99 -5.02 16.50 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 C 0.16 3.45 5.01 -4.04 -0.02 3.43 16 22 C -0.13 -2.63 5.55 -27.88 -0.15 -2.78 16 23 C 0.48 8.54 8.33 36.01 0.30 8.84 16 24 O -0.53 -10.43 16.74 -18.75 -0.31 -10.75 16 25 O -0.52 -7.78 13.42 -39.24 -0.53 -8.31 16 26 S 0.10 1.20 23.31 -107.50 -2.51 -1.30 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.39 6.27 8.46 -40.82 -0.35 5.93 16 37 H 0.12 2.90 6.24 -51.93 -0.32 2.57 16 38 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 39 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.05 1.16 8.03 -51.93 -0.42 0.74 16 41 H 0.05 0.95 7.80 -51.93 -0.41 0.55 16 42 H 0.11 2.31 6.38 -51.93 -0.33 1.98 16 43 H 0.10 2.22 8.14 -51.93 -0.42 1.80 16 44 H 0.40 3.84 9.10 45.56 0.41 4.25 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -31.19 384.83 -9.63 -40.82 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.59 Total: 10.62 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.30 Total: 11.54 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.25 Total: -51.18 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.76 Total: -32.80 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.19 -9.63 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597527835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.625 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds