Wall clock time and date at job start Sat Apr 11 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35249 * 126.06880 * 2 1 4 4 C 1.40435 * 107.85878 * 179.97438 * 3 2 1 5 5 N 1.39986 * 125.96997 * 180.02562 * 4 3 2 6 6 C 1.46498 * 120.00561 * 359.97438 * 5 4 3 7 7 H 1.09000 * 109.46803 * 35.00373 * 6 5 4 8 8 C 1.50695 * 109.47155 * 275.00224 * 6 5 4 9 9 O 1.20827 * 120.00306 * 359.97438 * 8 6 5 10 10 O 1.34229 * 119.99788 * 179.97438 * 8 6 5 11 11 C 1.50703 * 109.47213 * 154.99929 * 6 5 4 12 12 C 1.38386 * 119.92272 * 40.00439 * 11 6 5 13 13 C 1.38340 * 120.30427 * 179.97438 * 12 11 6 14 14 C 1.37961 * 120.14967 * 359.97436 * 13 12 11 15 15 C 1.39610 * 119.84976 * 0.02667 * 14 13 12 16 16 C 1.43202 * 120.15143 * 179.97438 * 15 14 13 17 17 N 9.58118 * 122.48455 * 26.16040 * 2 1 3 18 18 C 1.37926 * 119.92319 * 219.72617 * 11 6 5 19 19 N 1.31222 * 108.04954 * 0.02562 * 4 3 2 20 20 N 1.34962 * 126.06638 * 179.97438 * 2 1 3 21 21 C 1.46502 * 125.97382 * 0.04475 * 20 2 1 22 22 C 1.50703 * 109.46598 * 270.00119 * 21 20 2 23 23 H 1.07998 * 120.00484 * 359.97438 * 22 21 20 24 24 C 1.37876 * 119.99796 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99979 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99952 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47028 * 90.00368 * 26 24 22 28 28 H 1.48506 * 109.47006 * 209.99881 * 26 24 22 29 29 H 1.48497 * 109.47428 * 330.00004 * 26 24 22 30 30 H 1.09000 * 109.47421 * 90.02134 * 1 2 3 31 31 H 1.08996 * 109.47327 * 210.02590 * 1 2 3 32 32 H 1.09000 * 109.46818 * 330.02153 * 1 2 3 33 33 H 1.07998 * 126.07053 * 0.24014 * 3 2 1 34 34 H 0.97005 * 119.99411 * 180.02562 * 5 4 3 35 35 H 0.96709 * 116.99832 * 179.97438 * 10 8 6 36 36 H 1.08007 * 119.84702 * 359.97438 * 12 11 6 37 37 H 1.08001 * 119.92064 * 180.02562 * 13 12 11 38 38 H 1.08000 * 120.07681 * 180.02562 * 14 13 12 39 39 H 1.08001 * 120.07597 * 0.02562 * 18 11 6 40 40 H 1.09004 * 109.46979 * 29.99399 * 21 20 2 41 41 H 1.08998 * 109.47463 * 149.99788 * 21 20 2 42 42 H 0.97005 * 120.00115 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6544 0.0006 5 7 4.7724 1.4736 0.0013 6 6 4.6240 2.9311 0.0009 7 1 3.7493 3.2073 0.5897 8 6 4.4509 3.4180 -1.4147 9 8 4.4520 2.6286 -2.3295 10 8 4.2956 4.7286 -1.6593 11 6 5.8537 3.5614 0.6022 12 6 7.1055 3.0495 0.3090 13 6 8.2396 3.6223 0.8561 14 6 8.1295 4.7094 1.6983 15 6 6.8697 5.2310 1.9985 16 6 6.7478 6.3589 2.8723 17 7 6.6528 7.2542 3.5633 18 6 5.7293 4.6508 1.4389 19 7 3.6336 -0.6578 0.0004 20 7 2.3015 -1.0909 0.0005 21 6 1.8498 -2.4846 0.0002 22 6 1.6940 -2.9623 1.4210 23 1 1.9103 -2.2949 2.2420 24 6 1.2764 -4.2520 1.6727 25 7 1.0135 -5.0650 0.6730 26 14 1.0840 -4.8444 3.4338 27 1 -0.2990 -4.5702 3.8999 28 1 1.3470 -6.3047 3.4963 29 1 2.0509 -4.1296 4.3051 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 1.9721 2.1212 0.0037 34 1 5.6573 1.0762 0.0013 35 1 4.1885 4.9931 -2.5833 36 1 7.1974 2.1988 -0.3501 37 1 9.2135 3.2179 0.6228 38 1 9.0157 5.1559 2.1245 39 1 4.7521 5.0519 1.6637 40 1 0.8914 -2.5557 -0.5142 41 1 2.5846 -3.1047 -0.5132 42 1 0.7193 -5.9722 0.8500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610474237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:46 Heat of formation + Delta-G solvation = 50.945739 kcal Electronic energy + Delta-G solvation = -27919.953199 eV Core-core repulsion = 23867.135595 eV Total energy + Delta-G solvation = -4052.817604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96042 -40.21461 -39.64390 -37.03262 -36.39206 -35.60346 -33.62091 -32.42953 -31.80416 -31.13189 -30.46343 -27.66970 -26.59479 -25.96081 -24.37831 -23.26411 -22.73614 -21.61286 -19.78748 -19.51937 -18.79544 -17.93277 -16.93050 -16.79125 -16.65081 -16.44898 -15.81216 -15.60148 -15.31354 -14.69187 -14.52652 -14.42924 -14.27951 -14.04244 -13.58360 -13.43276 -13.37631 -13.12036 -12.89521 -12.62411 -12.49214 -12.34237 -12.16516 -11.99507 -11.69684 -11.58684 -11.48731 -11.41588 -11.09956 -10.88211 -10.80666 -10.29506 -10.13842 -9.67876 -9.46521 -9.39513 -9.28605 -8.63329 -7.85152 -7.21575 -6.23700 -4.31701 0.29810 0.73760 2.07476 2.30283 2.48416 2.60018 2.83003 3.17499 3.21401 3.28251 3.33807 3.45003 3.49118 3.70933 4.02661 4.07411 4.31928 4.34918 4.54153 4.68810 4.80822 4.96851 5.09434 5.13604 5.23070 5.33907 5.39239 5.73625 5.74120 5.79770 5.85776 5.95533 6.04113 6.10703 6.24228 6.29974 6.37577 6.58178 6.82077 7.00571 7.10465 7.12579 7.46361 7.68374 7.80608 7.91026 7.95518 8.10663 8.72670 8.82209 9.34621 10.83083 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.002592 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.874540 B =10798.027756 C =11690.142386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.111 3.889 3 C -0.336 4.336 4 C 0.313 3.687 5 N -0.699 5.699 6 C 0.232 3.768 7 H 0.128 0.872 8 C 0.455 3.545 9 O -0.488 6.488 10 O -0.518 6.518 11 C -0.091 4.091 12 C -0.074 4.074 13 C -0.114 4.114 14 C -0.063 4.063 15 C -0.028 4.028 16 C 0.256 3.744 17 N -0.415 5.415 18 C -0.041 4.041 19 N -0.337 5.337 20 N -0.322 5.322 21 C 0.259 3.741 22 C -0.535 4.535 23 H 0.064 0.936 24 C 0.065 3.935 25 N -0.892 5.892 26 Si 0.905 3.095 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.272 1.272 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.406 0.594 35 H 0.407 0.593 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.639 20.176 -2.611 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.022 4.022 3 C -0.368 4.368 4 C 0.058 3.942 5 N -0.342 5.342 6 C 0.121 3.879 7 H 0.145 0.855 8 C 0.293 3.707 9 O -0.372 6.372 10 O -0.329 6.329 11 C -0.092 4.092 12 C -0.093 4.093 13 C -0.132 4.132 14 C -0.083 4.083 15 C -0.032 4.032 16 C -0.059 4.059 17 N -0.090 5.090 18 C -0.062 4.062 19 N -0.167 5.167 20 N -0.102 5.102 21 C 0.142 3.858 22 C -0.573 4.573 23 H 0.083 0.917 24 C -0.138 4.138 25 N -0.530 5.530 26 Si 0.732 3.268 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.197 1.197 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.145 0.855 34 H 0.243 0.757 35 H 0.266 0.734 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.014 19.895 -1.439 22.319 hybrid contribution -0.319 -0.095 -0.119 0.354 sum 9.694 19.799 -1.558 22.100 Atomic orbital electron populations 1.20401 0.88198 1.03855 1.02525 1.20829 0.94576 0.87252 0.99554 1.20383 0.90603 0.98154 1.27673 1.18858 0.86702 0.89705 0.98937 1.42933 1.05616 1.00228 1.85393 1.18769 0.98231 0.81819 0.89102 0.85497 1.24477 0.72809 0.79972 0.93485 1.90772 1.44423 1.55928 1.46123 1.84539 1.84621 1.27207 1.36569 1.19349 0.93659 0.96907 0.99290 1.21312 0.91657 0.98754 0.97620 1.21084 0.99139 0.95851 0.97170 1.21262 0.95898 0.95219 0.95948 1.15881 0.94751 0.93456 0.99066 1.25575 0.93974 0.93012 0.93350 1.81230 1.07036 1.10850 1.09897 1.20977 0.98264 0.93499 0.93420 1.77350 0.99103 1.08454 1.31792 1.48936 1.01217 1.07506 1.52513 1.19639 0.95863 0.71544 0.98794 1.21333 1.46620 0.97931 0.91442 0.91744 1.24933 0.94768 0.96096 0.98040 1.69924 1.44956 1.07111 1.30998 0.86368 0.78613 0.77939 0.83841 1.20352 1.20916 1.19676 0.91089 0.89815 0.90774 0.85543 0.75726 0.73415 0.84795 0.84323 0.84673 0.84088 0.93026 0.93054 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.89 36.01 0.36 -1.11 16 2 C 0.11 2.21 6.92 -82.28 -0.57 1.64 16 3 C -0.34 -6.06 9.83 -39.82 -0.39 -6.45 16 4 C 0.31 5.91 8.06 -154.55 -1.25 4.66 16 5 N -0.70 -9.80 4.74 -55.84 -0.26 -10.06 16 6 C 0.23 2.41 2.68 -70.24 -0.19 2.23 16 7 H 0.13 1.20 7.00 -51.93 -0.36 0.84 16 8 C 0.46 5.12 7.65 36.00 0.28 5.39 16 9 O -0.49 -7.52 17.12 -18.75 -0.32 -7.84 16 10 O -0.52 -4.09 13.34 -39.26 -0.52 -4.62 16 11 C -0.09 -0.73 4.87 -104.68 -0.51 -1.24 16 12 C -0.07 -0.53 9.05 -39.49 -0.36 -0.88 16 13 C -0.11 -0.62 10.03 -39.65 -0.40 -1.01 16 14 C -0.06 -0.35 9.76 -39.17 -0.38 -0.73 16 15 C -0.03 -0.20 5.73 -106.93 -0.61 -0.81 16 16 C 0.26 2.27 15.33 -22.51 -0.35 1.93 16 17 N -0.42 -4.71 18.53 41.79 0.77 -3.94 16 18 C -0.04 -0.29 9.37 -39.17 -0.37 -0.65 16 19 N -0.34 -7.68 12.59 31.41 0.40 -7.28 16 20 N -0.32 -7.49 3.59 -58.32 -0.21 -7.70 16 21 C 0.26 6.62 5.81 -5.19 -0.03 6.59 16 22 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 23 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 26 Si 0.91 20.92 29.54 -169.99 -5.02 15.89 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.47 7.71 -51.93 -0.40 1.07 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.13 1.88 7.44 -52.49 -0.39 1.49 16 34 H 0.41 5.23 6.99 -40.82 -0.29 4.94 16 35 H 0.41 1.75 9.10 45.56 0.41 2.17 16 36 H 0.13 0.92 6.90 -52.48 -0.36 0.56 16 37 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 38 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.14 0.80 8.03 -52.49 -0.42 0.37 16 40 H 0.05 1.30 7.65 -51.93 -0.40 0.91 16 41 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -35.13 381.38 -7.74 -42.87 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.86 Total: 4.85 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -5.19 Total: -3.68 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 1.43 Total: -53.23 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.84 Total: -12.46 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.13 -7.74 -42.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610474237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.818 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds