Wall clock time and date at job start Sat Apr 11 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35249 * 126.06880 * 2 1 4 4 C 1.40435 * 107.85878 * 179.97438 * 3 2 1 5 5 N 1.39986 * 125.96997 * 180.02562 * 4 3 2 6 6 C 1.46498 * 120.00561 * 359.97438 * 5 4 3 7 7 H 1.09000 * 109.46803 * 35.00373 * 6 5 4 8 8 C 1.50695 * 109.47155 * 275.00224 * 6 5 4 9 9 O 1.20827 * 120.00306 * 359.97438 * 8 6 5 10 10 O 1.34229 * 119.99788 * 179.97438 * 8 6 5 11 11 C 1.50703 * 109.47213 * 154.99929 * 6 5 4 12 12 C 1.38386 * 119.92272 * 40.00439 * 11 6 5 13 13 C 1.38340 * 120.30427 * 179.97438 * 12 11 6 14 14 C 1.37961 * 120.14967 * 359.97436 * 13 12 11 15 15 C 1.39610 * 119.84976 * 0.02667 * 14 13 12 16 16 C 1.43202 * 120.15143 * 179.97438 * 15 14 13 17 17 N 9.58118 * 122.48455 * 26.16040 * 2 1 3 18 18 C 1.37926 * 119.92319 * 219.72617 * 11 6 5 19 19 N 1.31222 * 108.04954 * 0.02562 * 4 3 2 20 20 N 1.34962 * 126.06638 * 179.97438 * 2 1 3 21 21 C 1.46502 * 125.97382 * 0.04475 * 20 2 1 22 22 C 1.50703 * 109.46598 * 270.00119 * 21 20 2 23 23 H 1.07998 * 120.00484 * 359.97438 * 22 21 20 24 24 C 1.37876 * 119.99796 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99979 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99952 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47028 * 90.00368 * 26 24 22 28 28 H 1.48506 * 109.47006 * 209.99881 * 26 24 22 29 29 H 1.48497 * 109.47428 * 330.00004 * 26 24 22 30 30 H 1.09000 * 109.47421 * 90.02134 * 1 2 3 31 31 H 1.08996 * 109.47327 * 210.02590 * 1 2 3 32 32 H 1.09000 * 109.46818 * 330.02153 * 1 2 3 33 33 H 1.07998 * 126.07053 * 0.24014 * 3 2 1 34 34 H 0.97005 * 119.99411 * 180.02562 * 5 4 3 35 35 H 0.96709 * 116.99832 * 179.97438 * 10 8 6 36 36 H 1.08007 * 119.84702 * 359.97438 * 12 11 6 37 37 H 1.08001 * 119.92064 * 180.02562 * 13 12 11 38 38 H 1.08000 * 120.07681 * 180.02562 * 14 13 12 39 39 H 1.08001 * 120.07597 * 0.02562 * 18 11 6 40 40 H 1.09004 * 109.46979 * 29.99399 * 21 20 2 41 41 H 1.08998 * 109.47463 * 149.99788 * 21 20 2 42 42 H 0.97005 * 120.00115 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6373 0.6544 0.0006 5 7 4.7724 1.4736 0.0013 6 6 4.6240 2.9311 0.0009 7 1 3.7493 3.2073 0.5897 8 6 4.4509 3.4180 -1.4147 9 8 4.4520 2.6286 -2.3295 10 8 4.2956 4.7286 -1.6593 11 6 5.8537 3.5614 0.6022 12 6 7.1055 3.0495 0.3090 13 6 8.2396 3.6223 0.8561 14 6 8.1295 4.7094 1.6983 15 6 6.8697 5.2310 1.9985 16 6 6.7478 6.3589 2.8723 17 7 6.6528 7.2542 3.5633 18 6 5.7293 4.6508 1.4389 19 7 3.6336 -0.6578 0.0004 20 7 2.3015 -1.0909 0.0005 21 6 1.8498 -2.4846 0.0002 22 6 1.6940 -2.9623 1.4210 23 1 1.9103 -2.2949 2.2420 24 6 1.2764 -4.2520 1.6727 25 7 1.0135 -5.0650 0.6730 26 14 1.0840 -4.8444 3.4338 27 1 -0.2990 -4.5702 3.8999 28 1 1.3470 -6.3047 3.4963 29 1 2.0509 -4.1296 4.3051 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 1.9721 2.1212 0.0037 34 1 5.6573 1.0762 0.0013 35 1 4.1885 4.9931 -2.5833 36 1 7.1974 2.1988 -0.3501 37 1 9.2135 3.2179 0.6228 38 1 9.0157 5.1559 2.1245 39 1 4.7521 5.0519 1.6637 40 1 0.8914 -2.5557 -0.5142 41 1 2.5846 -3.1047 -0.5132 42 1 0.7193 -5.9722 0.8500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610474237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:45 Heat of formation + Delta-G solvation = 28.665930 kcal Electronic energy + Delta-G solvation = -27920.919324 eV Core-core repulsion = 23867.135595 eV Total energy + Delta-G solvation = -4053.783729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.07156 -41.42129 -40.30693 -37.83946 -37.24133 -36.62978 -35.45337 -33.73667 -32.58109 -32.34104 -31.78328 -28.77136 -28.18381 -27.38029 -25.11475 -24.70425 -23.69011 -22.43581 -21.14470 -20.77438 -19.71110 -18.78185 -18.71851 -17.76625 -17.69668 -17.35679 -16.96255 -16.47155 -16.42415 -16.21993 -15.78851 -15.48295 -15.08990 -15.05809 -14.71992 -14.39948 -14.24886 -14.15858 -13.94010 -13.78756 -13.64761 -13.56084 -13.35665 -13.20085 -13.10925 -12.75963 -12.64741 -12.56191 -12.46358 -12.21301 -12.12481 -12.08050 -11.72486 -11.21832 -10.94500 -10.70701 -9.96565 -9.92351 -9.38314 -8.71623 -8.26188 -6.47240 -0.25170 0.22477 1.20729 1.26985 1.39559 1.40685 1.48530 1.54303 1.64289 1.84980 2.07178 2.33231 2.38582 2.67703 2.83300 2.95892 2.99826 3.35618 3.80445 3.92392 4.07578 4.11943 4.18548 4.31058 4.38190 4.47286 4.58604 4.67416 4.74678 4.81158 4.91911 4.93367 4.98170 5.10938 5.22178 5.27196 5.31629 5.39964 5.54042 5.58387 5.66647 5.77021 5.86025 6.21473 6.37534 6.44586 6.62924 6.70091 7.04729 7.23864 7.29969 8.76340 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.002592 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.874540 B =10798.027756 C =11690.142386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.098 3.902 3 C -0.331 4.331 4 C 0.322 3.678 5 N -0.692 5.692 6 C 0.229 3.771 7 H 0.142 0.858 8 C 0.466 3.534 9 O -0.536 6.536 10 O -0.503 6.503 11 C -0.101 4.101 12 C -0.080 4.080 13 C -0.109 4.109 14 C -0.051 4.051 15 C -0.037 4.037 16 C 0.282 3.718 17 N -0.464 5.464 18 C -0.036 4.036 19 N -0.393 5.393 20 N -0.354 5.354 21 C 0.278 3.722 22 C -0.549 4.549 23 H 0.051 0.949 24 C 0.020 3.980 25 N -0.921 5.921 26 Si 0.972 3.028 27 H -0.264 1.264 28 H -0.276 1.276 29 H -0.274 1.274 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.163 0.837 34 H 0.409 0.591 35 H 0.426 0.574 36 H 0.132 0.868 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.037 22.261 -1.675 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C -0.363 4.363 4 C 0.066 3.934 5 N -0.335 5.335 6 C 0.120 3.880 7 H 0.159 0.841 8 C 0.306 3.694 9 O -0.425 6.425 10 O -0.316 6.316 11 C -0.102 4.102 12 C -0.099 4.099 13 C -0.127 4.127 14 C -0.071 4.071 15 C -0.041 4.041 16 C -0.033 4.033 17 N -0.139 5.139 18 C -0.056 4.056 19 N -0.224 5.224 20 N -0.134 5.134 21 C 0.159 3.841 22 C -0.587 4.587 23 H 0.069 0.931 24 C -0.181 4.181 25 N -0.559 5.559 26 Si 0.796 3.204 27 H -0.189 1.189 28 H -0.202 1.202 29 H -0.199 1.199 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.181 0.819 34 H 0.246 0.754 35 H 0.287 0.713 36 H 0.149 0.851 37 H 0.182 0.818 38 H 0.176 0.824 39 H 0.172 0.828 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.415 22.063 -0.513 24.403 hybrid contribution -0.333 -0.578 -0.496 0.831 sum 10.082 21.485 -1.009 23.754 Atomic orbital electron populations 1.20512 0.85774 1.04481 1.03808 1.21612 0.96350 0.86723 0.98633 1.20779 0.89885 0.99299 1.26312 1.19238 0.88604 0.89104 0.96491 1.43132 1.04458 1.01481 1.84432 1.18987 1.00226 0.79659 0.89160 0.84086 1.24444 0.71441 0.80407 0.93105 1.90774 1.46910 1.57281 1.47519 1.84486 1.83663 1.25148 1.38276 1.19124 0.92873 0.97723 1.00509 1.21454 0.92044 0.98780 0.97661 1.21333 0.99640 0.95381 0.96346 1.21551 0.96098 0.94564 0.94877 1.15909 0.95478 0.93271 0.99394 1.25756 0.92563 0.92518 0.92471 1.81259 1.08565 1.12468 1.11630 1.21046 0.99013 0.92929 0.92652 1.77236 0.99410 1.10829 1.34924 1.48651 1.02096 1.07167 1.55522 1.19100 0.94385 0.73090 0.97558 1.21461 1.47068 0.98306 0.91841 0.93057 1.25770 0.94088 0.95998 1.02229 1.70019 1.45332 1.07535 1.33062 0.85345 0.79007 0.77458 0.78610 1.18859 1.20156 1.19910 0.89414 0.91952 0.87247 0.81939 0.75368 0.71271 0.85050 0.81846 0.82449 0.82811 0.93586 0.96574 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.72 9.89 71.24 0.70 -2.01 16 2 C 0.10 3.88 6.92 41.39 0.29 4.17 16 3 C -0.33 -11.51 9.83 22.12 0.22 -11.30 16 4 C 0.32 12.12 8.06 133.39 1.08 13.20 16 5 N -0.69 -18.90 4.74 -330.56 -1.57 -20.47 16 6 C 0.23 4.33 2.68 43.50 0.12 4.44 16 7 H 0.14 2.27 7.00 -2.39 -0.02 2.25 16 8 C 0.47 9.62 7.65 71.23 0.55 10.17 16 9 O -0.54 -16.12 17.12 21.96 0.38 -15.74 16 10 O -0.50 -6.57 13.34 -51.41 -0.69 -7.26 16 11 C -0.10 -1.40 4.87 -19.90 -0.10 -1.49 16 12 C -0.08 -0.97 9.05 22.33 0.20 -0.77 16 13 C -0.11 -0.84 10.03 22.23 0.22 -0.62 16 14 C -0.05 -0.39 9.76 22.54 0.22 -0.17 16 15 C -0.04 -0.42 5.73 -21.36 -0.12 -0.54 16 16 C 0.28 4.47 15.33 88.35 1.35 5.82 16 17 N -0.46 -10.02 18.53 18.99 0.35 -9.66 16 18 C -0.04 -0.41 9.37 22.54 0.21 -0.19 16 19 N -0.39 -18.53 12.59 -54.54 -0.69 -19.22 16 20 N -0.35 -17.07 3.59 -338.43 -1.22 -18.28 16 21 C 0.28 14.97 5.81 85.63 0.50 15.46 16 22 C -0.55 -30.90 9.39 25.60 0.24 -30.66 16 23 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 24 C 0.02 1.09 5.46 84.65 0.46 1.55 16 25 N -0.92 -52.69 13.29 21.45 0.28 -52.41 16 26 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 27 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 30 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 2.20 7.71 -2.39 -0.02 2.18 16 32 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.16 4.31 7.44 -2.91 -0.02 4.29 16 34 H 0.41 10.46 6.99 -92.70 -0.65 9.81 16 35 H 0.43 2.52 9.10 -74.05 -0.67 1.84 16 36 H 0.13 1.65 6.90 -2.91 -0.02 1.63 16 37 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 38 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.15 1.29 8.03 -2.91 -0.02 1.27 16 40 H 0.05 2.46 7.65 -2.38 -0.02 2.44 16 41 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -79.39 381.38 4.80 -74.59 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.22 Total: 16.27 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.14 Total: 7.05 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -2.83 Total: -120.04 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.31 Total: -23.00 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -79.39 4.80 -74.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610474237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.253 kcal (2) G-P(sol) polarization free energy of solvation -79.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds