Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34176 * 127.02178 * 2 1 4 4 O 1.34221 * 109.12193 * 179.97438 * 3 2 1 5 5 C 1.33658 * 110.90468 * 359.76353 * 4 3 2 6 6 C 1.36415 * 108.39871 * 0.38933 * 5 4 3 7 7 C 1.47376 * 127.18934 * 179.89116 * 6 5 4 8 8 O 1.21614 * 119.99996 * 179.68475 * 7 6 5 9 9 N 1.34778 * 120.00029 * 359.68372 * 7 6 5 10 10 C 1.46503 * 119.99664 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47277 * 325.00122 * 10 9 7 12 12 C 1.53003 * 109.46873 * 85.00431 * 10 9 7 13 13 C 1.52997 * 109.46923 * 204.99904 * 10 9 7 14 14 H 1.09001 * 109.47289 * 65.00032 * 13 10 9 15 15 C 1.53005 * 109.47452 * 305.00108 * 13 10 9 16 16 N 1.46506 * 109.47289 * 185.00160 * 13 10 9 17 17 C 1.34774 * 120.00251 * 205.00099 * 16 13 10 18 18 O 1.21282 * 119.99905 * 0.02562 * 17 16 13 19 19 C 1.50696 * 119.99967 * 180.02562 * 17 16 13 20 20 S 1.81007 * 109.47019 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99724 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00304 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99673 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99962 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99808 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46816 * 90.00283 * 25 23 21 27 27 H 1.48503 * 109.47219 * 209.99738 * 25 23 21 28 28 H 1.48502 * 109.47281 * 329.99942 * 25 23 21 29 29 H 1.09004 * 109.46858 * 270.02309 * 1 2 3 30 30 H 1.08999 * 109.47124 * 30.01818 * 1 2 3 31 31 H 1.08997 * 109.47599 * 150.01987 * 1 2 3 32 32 H 1.07998 * 125.44260 * 359.97438 * 3 2 1 33 33 H 1.08004 * 125.79372 * 180.26460 * 5 4 3 34 34 H 0.96994 * 120.00220 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46754 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47083 * 299.99502 * 12 10 9 37 37 H 1.08993 * 109.47422 * 59.99779 * 12 10 9 38 38 H 1.09001 * 109.46812 * 300.00216 * 15 13 10 39 39 H 1.09002 * 109.46935 * 59.99874 * 15 13 10 40 40 H 1.08992 * 109.47061 * 179.97438 * 15 13 10 41 41 H 0.97006 * 119.99584 * 25.00028 * 16 13 10 42 42 H 1.09007 * 109.47090 * 299.99748 * 19 17 16 43 43 H 1.08990 * 109.47220 * 59.99884 * 19 17 16 44 44 H 0.97005 * 120.00123 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5922 0.6587 0.0006 5 6 3.6622 -0.6760 0.0061 6 6 2.3922 -1.1738 0.0006 7 6 1.9913 -2.5920 0.0014 8 8 0.8124 -2.8907 0.0017 9 7 2.9312 -3.5580 0.0018 10 6 2.5326 -4.9678 0.0033 11 1 1.6240 -5.0879 0.5932 12 6 2.2723 -5.4256 -1.4333 13 6 3.6521 -5.8137 0.6131 14 1 3.7773 -5.5483 1.6629 15 6 4.9582 -5.5497 -0.1388 16 7 3.3054 -7.2331 0.5062 17 6 3.8322 -8.1225 1.3709 18 8 4.5930 -7.7478 2.2379 19 6 3.4760 -9.5826 1.2604 20 16 4.3360 -10.5129 2.5532 21 6 3.7541 -12.1379 2.1991 22 1 3.0698 -12.2999 1.3794 23 6 4.1753 -13.2100 2.9737 24 7 5.0098 -13.0126 3.9724 25 14 3.5580 -14.9327 2.5988 26 1 4.4770 -15.5889 1.6345 27 1 3.5093 -15.7251 3.8538 28 1 2.1969 -14.8536 2.0103 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.9895 2.1011 -0.0004 33 1 4.5702 -1.2609 0.0118 34 1 3.8714 -3.3199 0.0020 35 1 1.9753 -6.4744 -1.4322 36 1 1.4747 -4.8230 -1.8678 37 1 3.1809 -5.3055 -2.0232 38 1 4.8330 -5.8151 -1.1886 39 1 5.2162 -4.4937 -0.0593 40 1 5.7558 -6.1520 0.2959 41 1 2.6965 -7.5327 -0.1871 42 1 2.3994 -9.7041 1.3810 43 1 3.7765 -9.9569 0.2819 44 1 5.3044 -13.7619 4.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677875082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -64.409054 kcal Electronic energy + Delta-G solvation = -26238.280366 eV Core-core repulsion = 22283.611803 eV Total energy + Delta-G solvation = -3954.668563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.99217 -40.30449 -39.21814 -36.97637 -34.21562 -34.14847 -32.43992 -31.90842 -30.62659 -29.55017 -28.51577 -27.60442 -25.51995 -25.23407 -23.85739 -21.37830 -20.69588 -20.44172 -19.94735 -18.63825 -17.87462 -16.66091 -16.62194 -16.53501 -16.14388 -15.72286 -15.23504 -15.02763 -14.92843 -14.81111 -14.58210 -14.00428 -13.87315 -13.69051 -13.44979 -13.29603 -13.20150 -12.90459 -12.83250 -12.57958 -12.47854 -12.06454 -11.94980 -11.90122 -11.26507 -11.10751 -11.07073 -11.03175 -10.77044 -10.29632 -9.96821 -9.83069 -9.49931 -9.41968 -9.11945 -9.08774 -9.00546 -8.25607 -6.51470 -6.22821 -3.93465 0.91275 1.62041 2.46420 2.61366 3.00768 3.03320 3.09597 3.21827 3.27938 3.32684 3.70311 4.06324 4.17662 4.19382 4.30953 4.58569 4.62962 4.83927 4.88356 4.99853 5.07279 5.12481 5.13813 5.16625 5.36412 5.37969 5.42800 5.45463 5.53350 5.60575 5.62990 5.66503 5.77123 5.86498 5.89596 6.06021 6.10850 6.12097 6.14771 6.51230 6.55858 7.11381 7.58548 7.62944 7.88269 8.34169 8.55156 9.22664 10.84573 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030590 B = 0.001779 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.099466 B =15732.719436 C =16057.643805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.131 4.131 3 C -0.047 4.047 4 O -0.171 6.171 5 C 0.023 3.977 6 C -0.234 4.234 7 C 0.589 3.411 8 O -0.529 6.529 9 N -0.720 5.720 10 C 0.138 3.862 11 H 0.097 0.903 12 C -0.167 4.167 13 C 0.137 3.863 14 H 0.094 0.906 15 C -0.168 4.168 16 N -0.732 5.732 17 C 0.535 3.465 18 O -0.515 6.515 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.208 0.792 33 H 0.211 0.789 34 H 0.398 0.602 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 27.524 -12.871 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C -0.113 4.113 4 O -0.066 6.066 5 C -0.048 4.048 6 C -0.239 4.239 7 C 0.377 3.623 8 O -0.406 6.406 9 N -0.373 5.373 10 C 0.033 3.967 11 H 0.115 0.885 12 C -0.226 4.226 13 C 0.031 3.969 14 H 0.113 0.887 15 C -0.226 4.226 16 N -0.388 5.388 17 C 0.321 3.679 18 O -0.389 6.389 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.225 0.775 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.912 28.036 -11.256 30.463 hybrid contribution -1.113 -1.694 -1.570 2.564 sum -5.025 26.342 -12.827 29.726 Atomic orbital electron populations 1.20250 0.88224 1.03245 1.02726 1.21439 0.97364 0.90295 1.04206 1.23752 0.79588 0.99790 1.08146 1.83795 1.29733 1.22264 1.70797 1.24436 0.98760 0.81272 1.00321 1.21411 0.93439 0.94205 1.14800 1.17238 0.85548 0.83663 0.75850 1.90784 1.17248 1.83193 1.49418 1.45914 1.09555 1.05758 1.76111 1.21121 0.98413 0.79535 0.97647 0.88453 1.22250 1.02636 1.01732 0.95956 1.20968 0.93195 0.81388 1.01314 0.88748 1.22271 0.98024 1.01224 1.01108 1.46079 1.50809 1.06358 1.35584 1.20331 0.79696 0.87560 0.80308 1.90702 1.34275 1.79983 1.33938 1.23538 1.05621 0.94194 1.07117 1.85389 1.59997 1.01536 1.36366 1.22869 1.33225 0.92624 1.19687 0.90901 1.24993 0.94777 0.99348 0.94466 1.70015 1.30749 1.32060 1.17455 0.86166 0.79133 0.82245 0.77947 1.20276 1.20746 1.19685 0.91074 0.91686 0.89893 0.77546 0.77292 0.76589 0.91302 0.91599 0.91678 0.91754 0.92410 0.90931 0.76529 0.89123 0.89147 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.00 36.01 0.36 -0.32 16 2 C -0.13 -1.10 6.37 -102.49 -0.65 -1.76 16 3 C -0.05 -0.30 11.96 29.30 0.35 0.05 16 4 O -0.17 -1.19 10.52 7.62 0.08 -1.11 16 5 C 0.02 0.14 11.61 30.08 0.35 0.49 16 6 C -0.23 -2.07 6.31 -103.28 -0.65 -2.72 16 7 C 0.59 6.17 7.78 -12.54 -0.10 6.07 16 8 O -0.53 -7.33 15.07 5.26 0.08 -7.25 16 9 N -0.72 -5.82 4.98 -54.90 -0.27 -6.09 16 10 C 0.14 1.27 2.62 -67.93 -0.18 1.09 16 11 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16 12 C -0.17 -1.34 9.00 37.16 0.33 -1.01 16 13 C 0.14 1.46 2.62 -67.93 -0.18 1.28 16 14 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 15 C -0.17 -1.51 9.00 37.16 0.33 -1.17 16 16 N -0.73 -9.09 4.99 -53.80 -0.27 -9.36 16 17 C 0.53 9.51 7.81 -10.99 -0.09 9.42 16 18 O -0.52 -11.15 15.52 5.56 0.09 -11.07 16 19 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 25 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.81 6.91 -51.93 -0.36 0.45 16 32 H 0.21 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.21 0.45 7.47 -52.48 -0.39 0.06 16 34 H 0.40 2.17 5.55 -40.82 -0.23 1.95 16 35 H 0.07 0.50 6.29 -51.93 -0.33 0.17 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 38 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 39 H 0.06 0.35 6.29 -51.93 -0.33 0.03 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.40 3.94 6.58 -40.82 -0.27 3.67 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -37.19 382.40 -6.60 -43.80 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.87 Total: 2.35 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 0.30 Total: -4.23 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.19 Total: -40.75 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.25 Total: -19.42 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.19 -6.60 -43.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677875082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.612 kcal (2) G-P(sol) polarization free energy of solvation -37.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds