Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34176 * 127.02178 * 2 1 4 4 O 1.34221 * 109.12193 * 179.97438 * 3 2 1 5 5 C 1.33658 * 110.90468 * 359.76353 * 4 3 2 6 6 C 1.36415 * 108.39871 * 0.38933 * 5 4 3 7 7 C 1.47376 * 127.18934 * 179.89116 * 6 5 4 8 8 O 1.21614 * 119.99996 * 179.68475 * 7 6 5 9 9 N 1.34778 * 120.00029 * 359.68372 * 7 6 5 10 10 C 1.46503 * 119.99664 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47277 * 325.00122 * 10 9 7 12 12 C 1.53003 * 109.46873 * 85.00431 * 10 9 7 13 13 C 1.52997 * 109.46923 * 204.99904 * 10 9 7 14 14 H 1.09001 * 109.47289 * 65.00032 * 13 10 9 15 15 C 1.53005 * 109.47452 * 305.00108 * 13 10 9 16 16 N 1.46506 * 109.47289 * 185.00160 * 13 10 9 17 17 C 1.34774 * 120.00251 * 205.00099 * 16 13 10 18 18 O 1.21282 * 119.99905 * 0.02562 * 17 16 13 19 19 C 1.50696 * 119.99967 * 180.02562 * 17 16 13 20 20 S 1.81007 * 109.47019 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99724 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00304 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99673 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99962 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99808 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46816 * 90.00283 * 25 23 21 27 27 H 1.48503 * 109.47219 * 209.99738 * 25 23 21 28 28 H 1.48502 * 109.47281 * 329.99942 * 25 23 21 29 29 H 1.09004 * 109.46858 * 270.02309 * 1 2 3 30 30 H 1.08999 * 109.47124 * 30.01818 * 1 2 3 31 31 H 1.08997 * 109.47599 * 150.01987 * 1 2 3 32 32 H 1.07998 * 125.44260 * 359.97438 * 3 2 1 33 33 H 1.08004 * 125.79372 * 180.26460 * 5 4 3 34 34 H 0.96994 * 120.00220 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46754 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47083 * 299.99502 * 12 10 9 37 37 H 1.08993 * 109.47422 * 59.99779 * 12 10 9 38 38 H 1.09001 * 109.46812 * 300.00216 * 15 13 10 39 39 H 1.09002 * 109.46935 * 59.99874 * 15 13 10 40 40 H 1.08992 * 109.47061 * 179.97438 * 15 13 10 41 41 H 0.97006 * 119.99584 * 25.00028 * 16 13 10 42 42 H 1.09007 * 109.47090 * 299.99748 * 19 17 16 43 43 H 1.08990 * 109.47220 * 59.99884 * 19 17 16 44 44 H 0.97005 * 120.00123 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5922 0.6587 0.0006 5 6 3.6622 -0.6760 0.0061 6 6 2.3922 -1.1738 0.0006 7 6 1.9913 -2.5920 0.0014 8 8 0.8124 -2.8907 0.0017 9 7 2.9312 -3.5580 0.0018 10 6 2.5326 -4.9678 0.0033 11 1 1.6240 -5.0879 0.5932 12 6 2.2723 -5.4256 -1.4333 13 6 3.6521 -5.8137 0.6131 14 1 3.7773 -5.5483 1.6629 15 6 4.9582 -5.5497 -0.1388 16 7 3.3054 -7.2331 0.5062 17 6 3.8322 -8.1225 1.3709 18 8 4.5930 -7.7478 2.2379 19 6 3.4760 -9.5826 1.2604 20 16 4.3360 -10.5129 2.5532 21 6 3.7541 -12.1379 2.1991 22 1 3.0698 -12.2999 1.3794 23 6 4.1753 -13.2100 2.9737 24 7 5.0098 -13.0126 3.9724 25 14 3.5580 -14.9327 2.5988 26 1 4.4770 -15.5889 1.6345 27 1 3.5093 -15.7251 3.8538 28 1 2.1969 -14.8536 2.0103 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.9895 2.1011 -0.0004 33 1 4.5702 -1.2609 0.0118 34 1 3.8714 -3.3199 0.0020 35 1 1.9753 -6.4744 -1.4322 36 1 1.4747 -4.8230 -1.8678 37 1 3.1809 -5.3055 -2.0232 38 1 4.8330 -5.8151 -1.1886 39 1 5.2162 -4.4937 -0.0593 40 1 5.7558 -6.1520 0.2959 41 1 2.6965 -7.5327 -0.1871 42 1 2.3994 -9.7041 1.3810 43 1 3.7765 -9.9569 0.2819 44 1 5.3044 -13.7619 4.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677875082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -91.935259 kcal Electronic energy + Delta-G solvation = -26239.473992 eV Core-core repulsion = 22283.611803 eV Total energy + Delta-G solvation = -3955.862189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.51091 -41.27101 -40.36645 -38.01282 -35.18638 -34.78858 -34.58011 -32.85714 -31.52206 -30.29218 -29.77598 -28.14667 -27.65603 -26.00499 -24.62056 -22.29557 -21.45208 -21.25566 -20.86549 -19.91119 -19.16746 -18.00711 -17.34190 -17.23500 -17.07592 -16.87632 -16.58457 -16.40024 -16.04060 -15.76565 -15.60621 -15.45315 -14.81867 -14.49735 -14.47793 -14.27988 -14.16239 -13.99534 -13.66115 -13.42915 -13.37319 -13.22401 -13.15892 -12.88976 -12.82169 -12.59463 -12.45771 -12.11013 -11.96105 -11.72319 -11.14000 -11.13731 -10.95746 -10.61591 -10.27370 -10.21563 -10.17425 -9.61233 -8.65768 -8.34519 -6.12078 0.35134 1.07497 1.25636 1.42528 1.45544 1.55849 1.60213 1.87408 2.08580 2.27375 2.29091 2.44243 2.99738 3.31903 3.44412 3.60060 3.66148 3.80201 3.95509 4.04008 4.10723 4.30351 4.34042 4.37159 4.44994 4.49796 4.52233 4.68365 4.68838 4.79164 4.89129 4.94351 4.96663 5.04839 5.06835 5.15059 5.32668 5.40127 5.42443 5.46493 5.50671 5.99858 6.20149 6.42736 6.48442 7.07075 7.15081 7.22291 8.74568 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030590 B = 0.001779 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.099466 B =15732.719436 C =16057.643805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.166 4.166 3 C -0.034 4.034 4 O -0.175 6.175 5 C 0.046 3.954 6 C -0.270 4.270 7 C 0.587 3.413 8 O -0.573 6.573 9 N -0.706 5.706 10 C 0.148 3.852 11 H 0.074 0.926 12 C -0.163 4.163 13 C 0.140 3.860 14 H 0.072 0.928 15 C -0.164 4.164 16 N -0.708 5.708 17 C 0.538 3.462 18 O -0.560 6.560 19 C -0.132 4.132 20 S -0.149 6.149 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.267 1.267 27 H -0.278 1.278 28 H -0.259 1.259 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.241 0.759 33 H 0.249 0.751 34 H 0.413 0.587 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.415 0.585 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 28.497 -15.099 32.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.168 4.168 3 C -0.099 4.099 4 O -0.069 6.069 5 C -0.025 4.025 6 C -0.275 4.275 7 C 0.377 3.623 8 O -0.454 6.454 9 N -0.360 5.360 10 C 0.042 3.958 11 H 0.093 0.907 12 C -0.221 4.221 13 C 0.035 3.965 14 H 0.090 0.910 15 C -0.222 4.222 16 N -0.364 5.364 17 C 0.324 3.676 18 O -0.438 6.438 19 C -0.283 4.283 20 S 0.078 5.922 21 C -0.695 4.695 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.192 1.192 27 H -0.204 1.204 28 H -0.183 1.183 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.257 0.743 33 H 0.265 0.735 34 H 0.252 0.748 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.063 0.937 41 H 0.254 0.746 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.843 29.045 -13.534 32.273 hybrid contribution -1.146 -1.836 -0.923 2.353 sum -4.989 27.209 -14.457 31.212 Atomic orbital electron populations 1.20175 0.88510 1.03022 1.02303 1.21686 0.97754 0.91168 1.06178 1.24322 0.78898 1.00678 1.06012 1.83838 1.30006 1.22554 1.70483 1.25094 0.99017 0.81100 0.97269 1.21444 0.95018 0.93402 1.17638 1.17541 0.85134 0.84637 0.75012 1.90760 1.19065 1.83897 1.51654 1.45749 1.10090 1.04909 1.75302 1.20908 0.96745 0.79987 0.98161 0.90743 1.22227 1.03109 1.02016 0.94779 1.21039 0.94817 0.80006 1.00684 0.90967 1.22248 0.95583 1.02982 1.01395 1.45821 1.49626 1.06623 1.34310 1.20010 0.79584 0.87410 0.80582 1.90693 1.36560 1.80436 1.36061 1.23389 1.05444 0.94473 1.04989 1.85546 1.62328 1.03440 1.40836 1.23213 1.33303 0.92958 1.19980 0.89917 1.26114 0.94762 1.04203 0.94063 1.70178 1.32271 1.33524 1.18750 0.84965 0.79051 0.76098 0.77940 1.19243 1.20372 1.18290 0.91649 0.89363 0.92586 0.74252 0.73508 0.74846 0.90321 0.92737 0.89911 0.89973 0.89094 0.93675 0.74646 0.87393 0.86962 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.00 71.24 0.71 -0.61 16 2 C -0.17 -2.67 6.37 -18.49 -0.12 -2.79 16 3 C -0.03 -0.35 11.96 66.89 0.80 0.45 16 4 O -0.17 -1.93 10.52 4.36 0.05 -1.88 16 5 C 0.05 0.44 11.61 67.39 0.78 1.22 16 6 C -0.27 -4.51 6.31 -18.99 -0.12 -4.63 16 7 C 0.59 12.16 7.78 86.65 0.67 12.83 16 8 O -0.57 -16.54 15.07 -4.08 -0.06 -16.60 16 9 N -0.71 -10.42 4.98 -445.84 -2.22 -12.64 16 10 C 0.15 2.55 2.62 44.99 0.12 2.67 16 11 H 0.07 1.68 7.58 -2.39 -0.02 1.67 16 12 C -0.16 -2.28 9.00 71.98 0.65 -1.63 16 13 C 0.14 2.80 2.62 44.99 0.12 2.92 16 14 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 15 C -0.16 -2.56 9.00 71.98 0.65 -1.91 16 16 N -0.71 -16.62 4.99 -442.52 -2.21 -18.83 16 17 C 0.54 18.96 7.81 87.66 0.68 19.65 16 18 O -0.56 -24.80 15.52 -3.04 -0.05 -24.85 16 19 C -0.13 -5.08 6.16 71.23 0.44 -4.64 16 20 S -0.15 -8.15 20.57 -56.49 -1.16 -9.32 16 21 C -0.55 -31.02 9.50 67.96 0.65 -30.38 16 22 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.76 5.49 84.86 0.47 1.22 16 24 N -0.91 -55.75 13.22 21.65 0.29 -55.47 16 25 Si 1.00 43.47 29.55 68.60 2.03 45.49 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.18 6.91 -2.39 -0.02 1.16 16 32 H 0.24 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.25 0.04 7.47 -2.91 -0.02 0.02 16 34 H 0.41 3.37 5.55 -92.71 -0.51 2.86 16 35 H 0.08 0.93 6.29 -2.38 -0.02 0.92 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.88 6.56 -2.39 -0.02 0.87 16 38 H 0.08 1.02 6.56 -2.39 -0.02 1.00 16 39 H 0.09 0.80 6.29 -2.39 -0.02 0.78 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.41 7.21 6.58 -92.70 -0.61 6.60 16 42 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 43 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 44 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -85.77 382.40 3.09 -82.68 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.07 Total: 17.03 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.50 Total: -5.62 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -4.14 Total: -86.94 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.06 Total: -43.32 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.32 kcal Total: -85.77 3.09 -82.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677875082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.255 kcal (2) G-P(sol) polarization free energy of solvation -85.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds