Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34182 * 125.43859 * 2 1 4 4 C 1.47012 * 105.95391 * 179.97438 * 3 2 1 5 5 C 1.47382 * 127.19117 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99937 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99755 * 180.27474 * 5 4 3 8 8 C 1.46505 * 119.99724 * 179.72668 * 7 5 4 9 9 H 1.09000 * 109.46989 * 324.99747 * 8 7 5 10 10 C 1.52996 * 109.47130 * 85.00158 * 8 7 5 11 11 C 1.52998 * 109.47085 * 205.00369 * 8 7 5 12 12 N 1.46504 * 109.47491 * 54.99943 * 11 8 7 13 13 C 1.46500 * 119.99700 * 270.00414 * 12 11 8 14 14 C 1.34776 * 119.99970 * 90.00015 * 12 11 8 15 15 O 1.21276 * 119.99952 * 359.97438 * 14 12 11 16 16 C 1.50699 * 119.99925 * 180.02562 * 14 12 11 17 17 S 1.80993 * 109.47095 * 179.97438 * 16 14 12 18 18 C 1.76201 * 99.99912 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00317 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99927 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00256 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99833 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.47014 * 90.00741 * 22 20 18 24 24 H 1.48502 * 109.47294 * 210.00023 * 22 20 18 25 25 H 1.48502 * 109.47756 * 330.00289 * 22 20 18 26 26 C 1.36423 * 105.61931 * 0.22810 * 4 3 2 27 27 O 1.33654 * 108.39297 * 359.63197 * 26 4 3 28 28 H 1.09007 * 109.47549 * 89.99917 * 1 2 3 29 29 H 1.09000 * 109.47208 * 209.99857 * 1 2 3 30 30 H 1.09001 * 109.47145 * 329.99941 * 1 2 3 31 31 H 1.07999 * 127.02066 * 0.02562 * 3 2 1 32 32 H 0.97000 * 120.00483 * 359.73101 * 7 5 4 33 33 H 1.08998 * 109.47099 * 300.00036 * 10 8 7 34 34 H 1.09002 * 109.46807 * 60.00065 * 10 8 7 35 35 H 1.09003 * 109.47061 * 180.02562 * 10 8 7 36 36 H 1.09003 * 109.47541 * 175.00064 * 11 8 7 37 37 H 1.09008 * 109.47363 * 294.99955 * 11 8 7 38 38 H 1.09000 * 109.47354 * 90.00174 * 13 12 11 39 39 H 1.09009 * 109.46833 * 209.99615 * 13 12 11 40 40 H 1.08999 * 109.47622 * 329.99127 * 13 12 11 41 41 H 1.09003 * 109.46756 * 299.99841 * 16 14 12 42 42 H 1.08994 * 109.47333 * 59.99206 * 16 14 12 43 43 H 0.96996 * 120.00390 * 179.97438 * 21 20 18 44 44 H 1.07999 * 125.80107 * 179.76830 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6709 0.6029 0.0006 5 6 4.9024 1.4125 0.0003 6 8 4.8319 2.6266 0.0000 7 7 6.1067 0.8074 -0.0046 8 6 7.3308 1.6123 -0.0109 9 1 7.1692 2.5147 -0.6005 10 6 7.6945 1.9988 1.4241 11 6 8.4724 0.7996 -0.6251 12 7 8.0762 0.3283 -1.9545 13 6 7.4032 -0.9645 -2.1028 14 6 8.3310 1.0841 -3.0409 15 8 8.8876 2.1545 -2.9180 16 6 7.9230 0.5996 -4.4083 17 16 8.3981 1.8277 -5.6501 18 6 7.8197 1.0269 -7.1092 19 1 7.3387 0.0624 -7.0414 20 6 7.9824 1.6358 -8.3459 21 7 7.5500 1.0379 -9.4359 22 14 8.8137 3.3045 -8.4632 23 1 10.2762 3.1175 -8.6409 24 1 8.2655 4.0502 -9.6246 25 1 8.5606 4.0725 -7.2177 26 6 3.5789 -0.7583 -0.0043 27 8 2.2852 -1.0935 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9595 2.1230 0.0004 32 1 6.1630 -0.1609 -0.0040 33 1 6.8812 2.5778 1.8615 34 1 7.8560 1.0963 2.0135 35 1 8.6050 2.5981 1.4193 36 1 9.3596 1.4269 -0.7115 37 1 8.6933 -0.0563 0.0129 38 1 6.3248 -0.8229 -2.0319 39 1 7.6502 -1.3933 -3.0741 40 1 7.7339 -1.6391 -1.3132 41 1 8.4215 -0.3458 -4.6225 42 1 6.8430 0.4550 -4.4353 43 1 7.6633 1.4636 -10.3001 44 1 4.4103 -1.4476 -0.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679909433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -57.588251 kcal Electronic energy + Delta-G solvation = -27062.351467 eV Core-core repulsion = 23107.978676 eV Total energy + Delta-G solvation = -3954.372791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.86905 -40.19184 -39.18545 -36.46289 -34.57269 -33.43298 -32.76143 -32.43964 -31.16662 -29.59506 -27.40518 -27.00440 -25.78700 -25.43802 -24.24721 -21.56777 -21.37102 -20.09125 -19.47960 -18.06174 -17.71102 -16.86310 -16.64740 -16.56986 -16.26591 -15.94144 -15.38887 -14.97311 -14.87692 -14.65031 -13.92054 -13.76197 -13.62372 -13.50846 -13.40623 -13.38220 -13.11174 -13.04218 -12.88880 -12.79468 -12.49270 -12.33083 -12.14331 -12.10429 -11.91670 -11.29814 -11.24874 -11.00382 -10.60472 -10.15529 -10.05251 -9.85866 -9.56212 -9.35312 -9.00227 -8.90396 -8.66904 -8.49335 -6.91993 -6.29058 -4.00726 1.04868 1.76004 2.47346 2.64522 2.86645 2.92490 3.17112 3.21545 3.33424 3.51826 3.58306 4.15864 4.33398 4.35869 4.52900 4.55671 4.65143 4.78269 4.91372 4.94882 5.05218 5.07975 5.10039 5.14115 5.18102 5.22632 5.27777 5.31158 5.44025 5.46044 5.52691 5.54211 5.64120 5.75371 5.87016 5.96481 5.97839 6.04684 6.27730 6.46141 6.67328 7.27558 7.32666 7.93941 8.06848 8.37711 8.40877 9.17292 10.80177 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.002959 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.531689 B = 9461.462148 C =10915.426067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.163 4.163 4 C -0.227 4.227 5 C 0.587 3.413 6 O -0.529 6.529 7 N -0.719 5.719 8 C 0.125 3.875 9 H 0.098 0.902 10 C -0.159 4.159 11 C 0.111 3.889 12 N -0.622 5.622 13 C 0.075 3.925 14 C 0.533 3.467 15 O -0.513 6.513 16 C -0.121 4.121 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.015 3.985 27 O -0.172 6.172 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.393 0.607 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 -8.472 25.015 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.182 4.182 4 C -0.231 4.231 5 C 0.374 3.626 6 O -0.406 6.406 7 N -0.371 5.371 8 C 0.019 3.981 9 H 0.116 0.884 10 C -0.218 4.218 11 C -0.013 4.013 12 N -0.358 5.358 13 C -0.069 4.069 14 C 0.321 3.679 15 O -0.387 6.387 16 C -0.271 4.271 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.055 4.055 27 O -0.068 6.068 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.177 0.823 32 H 0.227 0.773 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.785 -6.275 24.980 26.907 hybrid contribution -0.207 -1.102 -0.548 1.248 sum -7.992 -7.377 24.432 26.743 Atomic orbital electron populations 1.20349 0.84555 1.04208 1.03954 1.22345 0.94196 0.83525 1.06160 1.22509 0.89944 0.99829 1.05921 1.21523 0.94779 0.93268 1.13551 1.17267 0.82175 0.87173 0.75974 1.90812 1.86979 1.13640 1.49188 1.45879 1.05417 1.09739 1.76045 1.21492 0.83470 0.95894 0.97217 0.88436 1.22108 1.02504 1.01740 0.95479 1.21778 0.97354 0.99208 0.82948 1.47759 1.61158 1.20649 1.06192 1.21884 0.96975 0.84383 1.03631 1.20326 0.77938 0.84144 0.85523 1.90701 1.40682 1.21356 1.85956 1.23300 1.04834 1.04455 0.94519 1.84817 1.79490 1.27252 1.00018 1.22297 1.45097 1.08654 0.90765 0.89440 1.24706 0.94219 0.97846 0.94498 1.69931 1.44844 1.38679 0.98261 0.86742 0.80552 0.84381 0.80239 1.19197 1.19913 1.15883 1.24316 0.84397 0.95231 1.01537 1.83720 1.16376 1.35572 1.71133 0.89730 0.90381 0.89115 0.82327 0.77292 0.91751 0.92434 0.91104 0.88070 0.90121 0.92922 0.90156 0.91128 0.88543 0.88644 0.91932 0.77452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.40 36.00 0.37 -0.02 16 2 C -0.01 -0.12 7.28 -35.74 -0.26 -0.38 16 3 C -0.16 -1.76 10.90 -37.46 -0.41 -2.17 16 4 C -0.23 -2.49 6.31 -103.28 -0.65 -3.15 16 5 C 0.59 7.65 7.78 -12.54 -0.10 7.55 16 6 O -0.53 -9.26 16.65 5.27 0.09 -9.17 16 7 N -0.72 -7.02 4.34 -54.89 -0.24 -7.26 16 8 C 0.12 1.37 2.88 -67.93 -0.20 1.17 16 9 H 0.10 1.51 7.58 -51.93 -0.39 1.12 16 10 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 11 C 0.11 1.10 5.07 -4.04 -0.02 1.08 16 12 N -0.62 -7.58 2.73 -181.56 -0.50 -8.07 16 13 C 0.07 0.62 9.02 59.85 0.54 1.16 16 14 C 0.53 9.46 7.69 -10.99 -0.08 9.38 16 15 O -0.51 -11.01 15.44 5.56 0.09 -10.92 16 16 C -0.12 -2.35 4.71 36.01 0.17 -2.18 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 18 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.71 13.97 55.49 0.78 -25.93 16 22 Si 0.86 22.04 27.74 -169.99 -4.71 17.33 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.23 -6.08 6.74 56.52 0.38 -5.70 16 26 C 0.02 0.12 11.61 30.08 0.35 0.47 16 27 O -0.17 -1.55 10.52 7.64 0.08 -1.47 16 28 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.39 2.50 6.04 -40.82 -0.25 2.25 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 1.15 7.42 -51.93 -0.39 0.77 16 37 H 0.08 0.51 7.89 -51.92 -0.41 0.10 16 38 H 0.05 0.40 7.39 -51.93 -0.38 0.01 16 39 H 0.08 0.72 6.44 -51.92 -0.33 0.38 16 40 H 0.07 0.33 7.89 -51.93 -0.41 -0.08 16 41 H 0.10 1.72 7.40 -51.92 -0.38 1.33 16 42 H 0.10 1.79 8.11 -51.92 -0.42 1.37 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.21 0.69 7.47 -52.49 -0.39 0.30 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -38.86 386.45 -6.61 -45.47 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.30 Total: 0.06 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.28 Total: -0.20 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.04 Total: -41.26 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.25 Total: -21.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.86 -6.61 -45.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679909433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.118 kcal (2) G-P(sol) polarization free energy of solvation -38.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds