Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34177 * 125.43755 * 2 1 4 4 C 1.47026 * 105.95242 * 180.02562 * 3 2 1 5 5 C 1.47374 * 127.19118 * 180.02562 * 4 3 2 6 6 O 1.21619 * 119.99945 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00284 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00071 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47257 * 35.00264 * 8 7 5 10 10 C 1.52994 * 109.47552 * 274.99897 * 8 7 5 11 11 C 1.53003 * 109.46862 * 154.99929 * 8 7 5 12 12 N 1.46504 * 109.47229 * 305.00250 * 11 8 7 13 13 C 1.46501 * 119.99695 * 270.00060 * 12 11 8 14 14 C 1.34776 * 120.00080 * 89.99886 * 12 11 8 15 15 O 1.21282 * 119.99751 * 0.02562 * 14 12 11 16 16 C 1.50693 * 119.99959 * 180.02562 * 14 12 11 17 17 S 1.80998 * 109.47064 * 180.02562 * 16 14 12 18 18 C 1.76198 * 100.00154 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00332 * 359.97438 * 18 17 16 20 20 C 1.38804 * 120.00034 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00257 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99756 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46872 * 90.00151 * 22 20 18 24 24 H 1.48494 * 109.46895 * 209.99933 * 22 20 18 25 25 H 1.48498 * 109.47243 * 330.00043 * 22 20 18 26 26 C 1.36415 * 105.61852 * 0.02562 * 4 3 2 27 27 O 1.33658 * 108.39272 * 359.97438 * 26 4 3 28 28 H 1.09003 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47091 * 299.99458 * 1 2 3 30 30 H 1.09003 * 109.47346 * 59.99921 * 1 2 3 31 31 H 1.07999 * 127.02292 * 0.02562 * 3 2 1 32 32 H 0.96998 * 119.99096 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.47260 * 180.02562 * 10 8 7 34 34 H 1.09000 * 109.47139 * 300.00439 * 10 8 7 35 35 H 1.09003 * 109.46992 * 60.00506 * 10 8 7 36 36 H 1.08999 * 109.46919 * 65.00305 * 11 8 7 37 37 H 1.09005 * 109.46898 * 185.00284 * 11 8 7 38 38 H 1.09005 * 109.47433 * 90.00098 * 13 12 11 39 39 H 1.08997 * 109.46934 * 209.99793 * 13 12 11 40 40 H 1.08995 * 109.47350 * 329.99971 * 13 12 11 41 41 H 1.09002 * 109.47132 * 299.99951 * 16 14 12 42 42 H 1.08996 * 109.47534 * 59.99944 * 16 14 12 43 43 H 0.96998 * 120.00120 * 180.02562 * 21 20 18 44 44 H 1.07989 * 125.80582 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0003 6 8 4.8319 2.6266 0.0000 7 7 6.1068 0.8074 -0.0015 8 6 7.3308 1.6122 -0.0018 9 1 7.1724 2.5148 0.5883 10 6 7.6871 1.9984 -1.4387 11 6 8.4756 0.7996 0.6066 12 7 8.0864 0.3286 1.9381 13 6 8.3694 1.1505 3.1174 14 6 7.4680 -0.8607 2.0781 15 8 7.2341 -1.5412 1.1019 16 6 7.0671 -1.3448 3.4477 17 16 6.2652 -2.9612 3.3054 18 6 5.9125 -3.2783 5.0024 19 1 6.1925 -2.5572 5.7561 20 6 5.2748 -4.4548 5.3706 21 7 4.9330 -5.3335 4.4522 22 14 4.9015 -4.7913 7.1699 23 1 3.5600 -4.2507 7.5065 24 1 4.9205 -6.2559 7.4138 25 1 5.9273 -4.1346 8.0194 26 6 3.5790 -0.7583 -0.0015 27 8 2.2852 -1.0935 -0.0009 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.9595 2.1230 0.0004 32 1 6.1629 -0.1610 -0.0022 33 1 8.5981 2.5969 -1.4389 34 1 7.8455 1.0958 -2.0289 35 1 6.8715 2.5774 -1.8721 36 1 8.6931 -0.0563 -0.0324 37 1 9.3632 1.4270 0.6882 38 1 7.5275 1.8165 3.3068 39 1 8.5233 0.5047 3.9818 40 1 9.2679 1.7418 2.9411 41 1 7.9536 -1.4335 4.0757 42 1 6.3739 -0.6332 3.8962 43 1 4.4870 -6.1555 4.7095 44 1 4.4102 -1.4477 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679909434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -84.430259 kcal Electronic energy + Delta-G solvation = -27739.028104 eV Core-core repulsion = 23783.491356 eV Total energy + Delta-G solvation = -3955.536747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.59786 -41.33750 -40.22110 -37.36173 -35.80431 -34.58410 -34.16400 -33.39258 -31.91748 -30.83634 -28.26854 -27.68557 -27.57114 -26.46478 -25.16160 -22.35982 -22.10248 -20.95701 -20.63659 -19.53149 -18.80937 -18.09154 -17.50574 -17.39049 -17.31367 -16.98952 -16.87562 -16.40605 -15.92460 -15.76562 -15.40510 -14.77194 -14.55989 -14.53817 -14.43881 -14.05021 -13.88712 -13.79620 -13.78149 -13.61095 -13.54600 -13.33214 -13.15754 -12.99153 -12.90567 -12.76687 -12.67362 -12.59049 -12.16543 -11.71945 -11.19719 -11.14609 -10.92233 -10.88219 -10.28058 -10.21427 -9.70731 -9.57872 -8.63630 -8.35242 -6.11018 0.27390 0.99577 1.25494 1.40408 1.44492 1.50110 1.55337 1.85404 2.03580 2.23330 2.26696 2.27584 2.99365 3.25969 3.56410 3.62248 3.69803 3.76157 3.98619 4.11156 4.17233 4.22451 4.32315 4.39250 4.45586 4.48593 4.51743 4.63996 4.69717 4.72052 4.72430 4.79323 4.84004 4.91521 4.98482 5.07053 5.22922 5.39492 5.41062 5.41779 5.57697 5.98193 6.18689 6.21316 6.43890 7.05900 7.07245 7.14310 8.73416 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008452 B = 0.004293 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.840955 B = 6521.429954 C = 9047.075704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 C -0.185 4.185 4 C -0.261 4.261 5 C 0.588 3.412 6 O -0.577 6.577 7 N -0.714 5.714 8 C 0.122 3.878 9 H 0.082 0.918 10 C -0.154 4.154 11 C 0.108 3.892 12 N -0.609 5.609 13 C 0.071 3.929 14 C 0.538 3.462 15 O -0.554 6.554 16 C -0.131 4.131 17 S -0.128 6.128 18 C -0.550 4.550 19 H 0.077 0.923 20 C 0.020 3.980 21 N -0.907 5.907 22 Si 0.990 3.010 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.260 1.260 26 C 0.034 3.966 27 O -0.182 6.182 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.167 0.833 32 H 0.407 0.593 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.271 0.729 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.392 15.627 -8.139 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.205 4.205 4 C -0.265 4.265 5 C 0.377 3.623 6 O -0.459 6.459 7 N -0.369 5.369 8 C 0.017 3.983 9 H 0.100 0.900 10 C -0.212 4.212 11 C -0.015 4.015 12 N -0.342 5.342 13 C -0.071 4.071 14 C 0.326 3.674 15 O -0.433 6.433 16 C -0.282 4.282 17 S 0.099 5.901 18 C -0.698 4.698 19 H 0.095 0.905 20 C -0.186 4.186 21 N -0.543 5.543 22 Si 0.812 3.188 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.037 4.037 27 O -0.077 6.077 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.184 0.816 32 H 0.247 0.753 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.155 0.845 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.865 15.044 -9.596 17.941 hybrid contribution 0.100 -0.044 2.146 2.149 sum 1.965 15.000 -7.449 16.863 Atomic orbital electron populations 1.20559 0.81574 1.05245 1.05451 1.23148 0.95894 0.82848 1.04353 1.22588 0.89514 1.00361 1.08016 1.21631 0.95319 0.93555 1.16040 1.17409 0.83095 0.86626 0.75198 1.90692 1.87849 1.14613 1.52753 1.46307 1.05143 1.11584 1.73869 1.21628 0.83497 0.94733 0.98397 0.89997 1.22067 1.02669 1.02222 0.94271 1.22072 0.96956 0.99782 0.82681 1.47837 1.58621 1.18517 1.09208 1.22090 1.02764 0.95426 0.86870 1.19990 0.76568 0.80904 0.89913 1.90562 1.55445 1.56494 1.40811 1.23410 1.04438 1.02242 0.98156 1.85284 1.75415 1.17354 1.12062 1.23189 1.45344 1.08297 0.92943 0.90484 1.25992 0.94421 0.94652 1.03513 1.70144 1.38987 1.09709 1.35501 0.85072 0.78976 0.77693 0.77021 1.19556 1.20160 1.18368 1.24670 0.84597 0.95548 0.98891 1.83793 1.16671 1.36457 1.70794 0.89741 0.88023 0.87266 0.81585 0.75321 0.88294 0.91837 0.93749 0.89753 0.84461 0.92702 0.90642 0.87209 0.87672 0.88785 0.92000 0.76935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.40 71.24 0.74 -0.45 16 2 C -0.01 -0.38 7.28 24.76 0.18 -0.20 16 3 C -0.19 -5.46 10.90 23.65 0.26 -5.21 16 4 C -0.26 -8.67 6.31 -18.99 -0.12 -8.79 16 5 C 0.59 19.86 7.78 86.65 0.67 20.54 16 6 O -0.58 -21.86 16.65 -4.09 -0.07 -21.93 16 7 N -0.71 -20.70 4.47 -445.86 -1.99 -22.69 16 8 C 0.12 2.69 2.88 44.99 0.13 2.82 16 9 H 0.08 1.94 7.58 -2.39 -0.02 1.92 16 10 C -0.15 -2.77 9.48 71.98 0.68 -2.08 16 11 C 0.11 1.99 5.19 86.38 0.45 2.44 16 12 N -0.61 -14.34 2.77 -846.74 -2.35 -16.69 16 13 C 0.07 1.19 10.29 127.77 1.31 2.51 16 14 C 0.54 18.07 6.99 87.65 0.61 18.68 16 15 O -0.55 -21.47 13.18 -3.03 -0.04 -21.51 16 16 C -0.13 -5.03 4.71 71.23 0.34 -4.70 16 17 S -0.13 -6.75 20.57 -56.49 -1.16 -7.91 16 18 C -0.55 -30.75 9.50 67.96 0.65 -30.10 16 19 H 0.08 4.06 7.80 -2.91 -0.02 4.04 16 20 C 0.02 1.09 5.49 84.86 0.47 1.56 16 21 N -0.91 -54.30 13.22 21.65 0.29 -54.01 16 22 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 C 0.03 1.10 11.61 67.39 0.78 1.88 16 27 O -0.18 -5.85 10.52 4.43 0.05 -5.80 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.41 12.60 4.80 -92.71 -0.44 12.16 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.76 7.42 -2.39 -0.02 1.75 16 37 H 0.14 1.35 7.89 -2.38 -0.02 1.33 16 38 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.07 1.33 6.44 -2.39 -0.02 1.31 16 40 H 0.11 1.05 7.89 -2.39 -0.02 1.03 16 41 H 0.11 3.68 7.40 -2.39 -0.02 3.67 16 42 H 0.09 3.49 8.11 -2.40 -0.02 3.47 16 43 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.21 6.79 7.47 -2.92 -0.02 6.77 16 Total: -1.00 -78.42 387.23 4.47 -73.95 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.58 Total: 32.61 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 7.15 Total: -1.11 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -4.06 Total: -93.39 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.06 Total: -49.25 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -6.75 SS G_CDS: -1.16 Total: -7.91 kcal Total: -78.42 4.47 -73.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679909434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.478 kcal (2) G-P(sol) polarization free energy of solvation -78.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds