Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33654 * 125.80078 * 2 1 4 4 C 1.34214 * 110.90894 * 179.97438 * 3 2 1 5 5 C 1.34176 * 109.12111 * 0.23254 * 4 3 2 6 6 C 1.36414 * 125.80190 * 179.97438 * 2 1 3 7 7 C 1.47374 * 127.19087 * 0.04915 * 6 2 1 8 8 O 1.21610 * 120.00377 * 0.02562 * 7 6 2 9 9 N 1.34780 * 120.00070 * 179.97438 * 7 6 2 10 10 C 1.46494 * 120.00207 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47189 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.47105 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47401 * 180.02562 * 12 11 10 14 14 C 1.46498 * 119.99930 * 89.99534 * 13 12 11 15 15 C 1.34770 * 119.99983 * 270.00528 * 13 12 11 16 16 O 1.21285 * 120.00361 * 359.97438 * 15 13 12 17 17 C 1.50703 * 120.00093 * 179.97438 * 15 13 12 18 18 S 1.81005 * 109.47270 * 179.97438 * 17 15 13 19 19 C 1.76193 * 99.99892 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00559 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99977 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99821 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47009 * 90.00250 * 23 21 19 25 25 H 1.48503 * 109.47099 * 210.00141 * 23 21 19 26 26 H 1.48500 * 109.47417 * 330.00011 * 23 21 19 27 27 H 1.08997 * 109.47055 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46956 * 120.02421 * 1 2 3 29 29 H 1.09001 * 109.46496 * 240.02319 * 1 2 3 30 30 H 1.08002 * 125.43487 * 179.97438 * 4 3 2 31 31 H 1.08005 * 127.01667 * 179.73251 * 5 4 3 32 32 H 0.96998 * 119.99462 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47388 * 300.00159 * 10 9 7 34 34 H 1.08999 * 109.47277 * 60.00692 * 10 9 7 35 35 H 1.09001 * 109.46787 * 300.00161 * 11 10 9 36 36 H 1.08999 * 109.46744 * 60.00000 * 11 10 9 37 37 H 1.09001 * 109.47226 * 299.99643 * 12 11 10 38 38 H 1.08999 * 109.47524 * 60.00227 * 12 11 10 39 39 H 1.09004 * 109.47421 * 90.00705 * 14 13 12 40 40 H 1.08998 * 109.47303 * 210.00525 * 14 13 12 41 41 H 1.09000 * 109.47374 * 330.00203 * 14 13 12 42 42 H 1.08992 * 109.47019 * 299.99428 * 17 15 13 43 43 H 1.09001 * 109.47058 * 59.99888 * 17 15 13 44 44 H 0.96999 * 119.99923 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7391 0.0006 5 6 3.6849 -0.5990 -0.0042 6 6 2.3051 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0001 8 8 0.6891 -2.7892 -0.0012 9 7 2.7931 -3.5015 0.0002 10 6 2.3646 -4.9024 -0.0008 11 6 3.5949 -5.8120 0.0002 12 6 3.1475 -7.2751 -0.0015 13 7 4.3254 -8.1461 0.0001 14 6 4.9123 -8.5823 1.2695 15 6 4.8693 -8.5460 -1.1664 16 8 4.3833 -8.1851 -2.2174 17 6 6.0814 -9.4415 -1.1649 18 16 6.5690 -9.7998 -2.8708 19 6 7.9668 -10.8320 -2.5790 20 1 8.2701 -11.0573 -1.5672 21 6 8.6784 -11.3556 -3.6496 22 7 9.7224 -12.1271 -3.4316 23 14 8.1545 -10.9654 -5.3996 24 1 8.8476 -9.7357 -5.8613 25 1 8.5138 -12.0994 -6.2884 26 1 6.6857 -10.7507 -5.4404 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5142 -0.8898 29 1 -0.3632 -0.5135 0.8902 30 1 4.4172 1.4286 0.0003 31 1 4.5929 -1.1839 -0.0091 32 1 3.7382 -3.2834 0.0009 33 1 1.7664 -5.1001 0.8887 34 1 1.7676 -5.0992 -0.8912 35 1 4.1934 -5.6145 -0.8891 36 1 4.1916 -5.6152 0.8908 37 1 2.5487 -7.4729 0.8876 38 1 2.5510 -7.4717 -0.8923 39 1 4.4469 -9.5168 1.5829 40 1 5.9838 -8.7352 1.1410 41 1 4.7428 -7.8193 2.0293 42 1 6.9016 -8.9418 -0.6496 43 1 5.8439 -10.3735 -0.6519 44 1 10.2195 -12.4933 -4.1798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687377695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -64.138351 kcal Electronic energy + Delta-G solvation = -25650.801725 eV Core-core repulsion = 21696.144901 eV Total energy + Delta-G solvation = -3954.656824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.98263 -39.83316 -39.48308 -36.31263 -35.09710 -33.51725 -32.46631 -32.44725 -31.94193 -29.38007 -27.61638 -26.93279 -25.70536 -25.28561 -23.39649 -22.19410 -21.34539 -20.12372 -19.29533 -18.28790 -17.71678 -16.86602 -16.76801 -16.42272 -16.22936 -15.79232 -15.60362 -15.45873 -14.98535 -14.75776 -14.38361 -13.86797 -13.66141 -13.57909 -13.41820 -13.32645 -13.28263 -13.14562 -12.81632 -12.69715 -12.55926 -12.30658 -12.19734 -11.94380 -11.86497 -11.28187 -11.06465 -11.02659 -10.61160 -10.32488 -10.25106 -9.87582 -9.52419 -9.39318 -9.02358 -8.96663 -8.68941 -8.51431 -6.94421 -6.30951 -4.02873 0.98046 1.62595 2.36868 2.65002 2.84459 2.97226 3.05233 3.20931 3.31503 3.49138 3.57607 4.08140 4.31170 4.38604 4.43670 4.53906 4.69626 4.72438 4.82321 4.92893 5.01737 5.08107 5.08595 5.09644 5.15837 5.23430 5.27472 5.31677 5.37034 5.40598 5.56509 5.61918 5.71878 5.74864 5.84465 5.85324 5.92601 5.97947 6.12856 6.50994 6.58363 7.20621 7.37863 7.92020 7.93005 8.38795 8.39490 9.15275 10.78196 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.001807 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.915152 B =15491.533001 C =16216.222602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.079 3.921 3 O -0.176 6.176 4 C -0.038 4.038 5 C -0.189 4.189 6 C -0.250 4.250 7 C 0.590 3.410 8 O -0.542 6.542 9 N -0.722 5.722 10 C 0.124 3.876 11 C -0.149 4.149 12 C 0.122 3.878 13 N -0.623 5.623 14 C 0.078 3.922 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.209 0.791 31 H 0.158 0.842 32 H 0.401 0.599 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.506 23.468 13.267 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.026 3.974 3 O -0.072 6.072 4 C -0.103 4.103 5 C -0.208 4.208 6 C -0.254 4.254 7 C 0.378 3.622 8 O -0.421 6.421 9 N -0.374 5.374 10 C 0.000 4.000 11 C -0.188 4.188 12 C -0.002 4.002 13 N -0.359 5.359 14 C -0.065 4.065 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.272 4.272 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.225 0.775 31 H 0.175 0.825 32 H 0.236 0.764 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.018 23.938 11.640 31.066 hybrid contribution 1.613 -0.505 0.582 1.788 sum -14.405 23.433 12.222 30.100 Atomic orbital electron populations 1.20490 0.83611 1.03627 1.05328 1.22851 0.94202 0.83121 0.97239 1.83788 1.17227 1.34924 1.71263 1.23886 0.83500 0.96444 1.06506 1.22893 0.96636 0.94640 1.06609 1.21152 0.93416 0.93841 1.16986 1.17171 0.85415 0.83724 0.75895 1.90783 1.16551 1.84188 1.50602 1.45765 1.09829 1.06148 1.75613 1.21276 0.96804 0.79110 1.02762 1.22182 0.97783 0.95269 1.03538 1.21230 0.87555 0.87795 1.03577 1.47823 1.30971 1.50651 1.06473 1.21811 0.99589 0.99993 0.85102 1.20346 0.84584 0.80231 0.83012 1.90699 1.61935 1.55788 1.30599 1.23315 0.97629 1.01326 1.04897 1.84801 1.38632 1.65179 1.03123 1.22304 1.12886 1.34072 0.97627 0.89402 1.24714 0.93780 0.93500 0.99305 1.69936 1.17688 1.31559 1.32454 0.86737 0.82134 0.78876 0.84116 1.19223 1.19927 1.15919 0.90490 0.88487 0.88542 0.77451 0.82489 0.76438 0.91200 0.90904 0.90404 0.91153 0.90390 0.89401 0.92455 0.90520 0.91280 0.88560 0.88490 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 9.14 36.01 0.33 -0.18 16 2 C 0.08 0.71 7.37 -34.96 -0.26 0.45 16 3 O -0.18 -1.45 10.52 7.65 0.08 -1.37 16 4 C -0.04 -0.23 12.03 29.30 0.35 0.12 16 5 C -0.19 -1.35 10.60 -37.46 -0.40 -1.75 16 6 C -0.25 -2.41 6.31 -103.28 -0.65 -3.06 16 7 C 0.59 6.57 7.81 -12.54 -0.10 6.47 16 8 O -0.54 -7.45 15.66 5.27 0.08 -7.37 16 9 N -0.72 -6.58 5.55 -61.40 -0.34 -6.93 16 10 C 0.12 1.13 5.67 -4.04 -0.02 1.11 16 11 C -0.15 -1.34 5.65 -26.73 -0.15 -1.49 16 12 C 0.12 1.26 5.41 -4.04 -0.02 1.24 16 13 N -0.62 -7.79 2.87 -181.57 -0.52 -8.31 16 14 C 0.08 0.71 10.24 59.85 0.61 1.32 16 15 C 0.53 9.25 7.69 -10.99 -0.08 9.17 16 16 O -0.52 -10.85 15.44 5.55 0.09 -10.77 16 17 C -0.12 -2.30 4.71 36.01 0.17 -2.13 16 18 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 19 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.33 13.97 55.49 0.78 -25.56 16 23 Si 0.86 21.67 27.74 -169.99 -4.71 16.96 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 29 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.21 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.16 0.76 7.74 -52.48 -0.41 0.36 16 32 H 0.40 2.84 7.64 -40.82 -0.31 2.53 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.09 1.07 7.42 -51.93 -0.39 0.68 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 41 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 42 H 0.10 1.69 7.40 -51.92 -0.38 1.31 16 43 H 0.10 1.73 8.11 -51.91 -0.42 1.31 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -36.81 389.76 -7.14 -43.95 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.46 Total: -0.26 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.01 Total: -0.62 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.09 Total: -40.79 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.25 Total: -19.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.81 -7.14 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687377695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.189 kcal (2) G-P(sol) polarization free energy of solvation -36.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds