Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33654 * 125.80078 * 2 1 4 4 C 1.34214 * 110.90894 * 179.97438 * 3 2 1 5 5 C 1.34176 * 109.12111 * 0.23254 * 4 3 2 6 6 C 1.36414 * 125.80190 * 179.97438 * 2 1 3 7 7 C 1.47374 * 127.19087 * 0.04915 * 6 2 1 8 8 O 1.21610 * 120.00377 * 0.02562 * 7 6 2 9 9 N 1.34780 * 120.00070 * 179.97438 * 7 6 2 10 10 C 1.46494 * 120.00207 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47189 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.47105 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47401 * 180.02562 * 12 11 10 14 14 C 1.46498 * 119.99930 * 89.99534 * 13 12 11 15 15 C 1.34770 * 119.99983 * 270.00528 * 13 12 11 16 16 O 1.21285 * 120.00361 * 359.97438 * 15 13 12 17 17 C 1.50703 * 120.00093 * 179.97438 * 15 13 12 18 18 S 1.81005 * 109.47270 * 179.97438 * 17 15 13 19 19 C 1.76193 * 99.99892 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00559 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99977 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99821 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47009 * 90.00250 * 23 21 19 25 25 H 1.48503 * 109.47099 * 210.00141 * 23 21 19 26 26 H 1.48500 * 109.47417 * 330.00011 * 23 21 19 27 27 H 1.08997 * 109.47055 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46956 * 120.02421 * 1 2 3 29 29 H 1.09001 * 109.46496 * 240.02319 * 1 2 3 30 30 H 1.08002 * 125.43487 * 179.97438 * 4 3 2 31 31 H 1.08005 * 127.01667 * 179.73251 * 5 4 3 32 32 H 0.96998 * 119.99462 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47388 * 300.00159 * 10 9 7 34 34 H 1.08999 * 109.47277 * 60.00692 * 10 9 7 35 35 H 1.09001 * 109.46787 * 300.00161 * 11 10 9 36 36 H 1.08999 * 109.46744 * 60.00000 * 11 10 9 37 37 H 1.09001 * 109.47226 * 299.99643 * 12 11 10 38 38 H 1.08999 * 109.47524 * 60.00227 * 12 11 10 39 39 H 1.09004 * 109.47421 * 90.00705 * 14 13 12 40 40 H 1.08998 * 109.47303 * 210.00525 * 14 13 12 41 41 H 1.09000 * 109.47374 * 330.00203 * 14 13 12 42 42 H 1.08992 * 109.47019 * 299.99428 * 17 15 13 43 43 H 1.09001 * 109.47058 * 59.99888 * 17 15 13 44 44 H 0.96999 * 119.99923 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7391 0.0006 5 6 3.6849 -0.5990 -0.0042 6 6 2.3051 -1.1064 0.0005 7 6 1.8740 -2.5157 0.0001 8 8 0.6891 -2.7892 -0.0012 9 7 2.7931 -3.5015 0.0002 10 6 2.3646 -4.9024 -0.0008 11 6 3.5949 -5.8120 0.0002 12 6 3.1475 -7.2751 -0.0015 13 7 4.3254 -8.1461 0.0001 14 6 4.9123 -8.5823 1.2695 15 6 4.8693 -8.5460 -1.1664 16 8 4.3833 -8.1851 -2.2174 17 6 6.0814 -9.4415 -1.1649 18 16 6.5690 -9.7998 -2.8708 19 6 7.9668 -10.8320 -2.5790 20 1 8.2701 -11.0573 -1.5672 21 6 8.6784 -11.3556 -3.6496 22 7 9.7224 -12.1271 -3.4316 23 14 8.1545 -10.9654 -5.3996 24 1 8.8476 -9.7357 -5.8613 25 1 8.5138 -12.0994 -6.2884 26 1 6.6857 -10.7507 -5.4404 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5142 -0.8898 29 1 -0.3632 -0.5135 0.8902 30 1 4.4172 1.4286 0.0003 31 1 4.5929 -1.1839 -0.0091 32 1 3.7382 -3.2834 0.0009 33 1 1.7664 -5.1001 0.8887 34 1 1.7676 -5.0992 -0.8912 35 1 4.1934 -5.6145 -0.8891 36 1 4.1916 -5.6152 0.8908 37 1 2.5487 -7.4729 0.8876 38 1 2.5510 -7.4717 -0.8923 39 1 4.4469 -9.5168 1.5829 40 1 5.9838 -8.7352 1.1410 41 1 4.7428 -7.8193 2.0293 42 1 6.9016 -8.9418 -0.6496 43 1 5.8439 -10.3735 -0.6519 44 1 10.2195 -12.4933 -4.1798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687377695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -89.922650 kcal Electronic energy + Delta-G solvation = -25651.919816 eV Core-core repulsion = 21696.144901 eV Total energy + Delta-G solvation = -3955.774915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.55725 -40.94557 -40.44711 -37.33329 -36.08212 -34.67381 -34.17778 -33.17269 -32.66742 -30.69996 -28.34699 -27.86093 -27.66489 -26.24216 -24.14133 -22.97735 -21.98984 -20.90237 -20.55609 -19.55365 -18.89567 -18.13877 -17.45720 -17.36511 -17.10146 -17.01329 -16.67285 -16.61462 -16.48383 -15.74158 -15.36239 -15.21998 -14.92198 -14.60756 -14.44438 -14.29083 -14.08353 -13.87952 -13.77352 -13.60761 -13.44920 -13.36456 -13.28167 -13.05943 -12.94889 -12.73810 -12.69463 -12.57951 -11.89851 -11.81380 -11.19989 -11.17458 -10.93256 -10.87589 -10.52143 -10.17085 -9.73373 -9.54791 -9.00464 -8.51859 -6.22614 0.29625 0.98307 1.10375 1.30518 1.46002 1.52075 1.54374 1.81446 2.04937 2.24307 2.27130 2.31243 2.69117 2.86402 3.58676 3.58858 3.73801 3.86885 3.94406 3.96458 4.13155 4.17710 4.33259 4.35764 4.43519 4.46065 4.56529 4.60509 4.61130 4.66823 4.72946 4.80377 4.85930 4.96995 5.04842 5.12855 5.18598 5.33117 5.39318 5.55900 5.70532 6.01153 6.11078 6.24076 6.48124 6.93535 7.09860 7.14581 8.60354 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.001807 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.915152 B =15491.533001 C =16216.222602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.067 3.933 3 O -0.183 6.183 4 C -0.031 4.031 5 C -0.199 4.199 6 C -0.274 4.274 7 C 0.584 3.416 8 O -0.577 6.577 9 N -0.714 5.714 10 C 0.129 3.871 11 C -0.133 4.133 12 C 0.118 3.882 13 N -0.608 5.608 14 C 0.069 3.931 15 C 0.530 3.470 16 O -0.562 6.562 17 C -0.106 4.106 18 S -0.180 6.180 19 C -0.527 4.527 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.238 1.238 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.247 0.753 31 H 0.178 0.822 32 H 0.412 0.588 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 25.008 14.692 32.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.013 3.987 3 O -0.079 6.079 4 C -0.096 4.096 5 C -0.218 4.218 6 C -0.279 4.279 7 C 0.374 3.626 8 O -0.459 6.459 9 N -0.365 5.365 10 C 0.005 3.995 11 C -0.172 4.172 12 C -0.005 4.005 13 N -0.342 5.342 14 C -0.073 4.073 15 C 0.317 3.683 16 O -0.440 6.440 17 C -0.257 4.257 18 S 0.046 5.954 19 C -0.675 4.675 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.162 1.162 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.263 0.737 31 H 0.196 0.804 32 H 0.248 0.752 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.123 25.480 13.122 32.884 hybrid contribution 1.633 -0.931 0.332 1.909 sum -14.490 24.549 13.454 31.522 Atomic orbital electron populations 1.20497 0.82874 1.04822 1.04691 1.23162 0.95008 0.83312 0.97196 1.83803 1.18131 1.34733 1.71187 1.24690 0.83438 0.96968 1.04505 1.23177 0.96214 0.95316 1.07099 1.21278 0.95134 0.93211 1.18268 1.17469 0.85152 0.84645 0.75382 1.90754 1.17931 1.84798 1.52405 1.45703 1.10234 1.05846 1.74745 1.21194 0.96743 0.79179 1.02346 1.22004 0.97437 0.94251 1.03478 1.21439 0.86714 0.88028 1.04315 1.47817 1.30740 1.49484 1.06121 1.22137 0.99322 1.01929 0.83932 1.20058 0.84142 0.80134 0.83963 1.90686 1.63141 1.57659 1.32519 1.23290 0.99226 1.02759 1.00385 1.84745 1.37186 1.64467 1.08969 1.22443 1.14031 1.34401 0.96624 0.91855 1.25542 0.93866 0.93448 1.03056 1.70011 1.18794 1.32655 1.33884 0.85886 0.81524 0.79226 0.79849 1.18672 1.18373 1.16236 0.88355 0.89320 0.88924 0.73672 0.80444 0.75179 0.90217 0.92794 0.92798 0.88741 0.86661 0.91692 0.91086 0.90836 0.87722 0.86910 0.87179 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 9.14 71.24 0.65 -0.36 16 2 C 0.07 1.16 7.37 25.26 0.19 1.35 16 3 O -0.18 -2.74 10.52 4.46 0.05 -2.70 16 4 C -0.03 -0.31 12.03 66.89 0.80 0.49 16 5 C -0.20 -2.50 10.60 23.65 0.25 -2.25 16 6 C -0.27 -5.15 6.31 -19.00 -0.12 -5.27 16 7 C 0.58 12.93 7.81 86.65 0.68 13.61 16 8 O -0.58 -16.19 15.66 -4.06 -0.06 -16.25 16 9 N -0.71 -12.33 5.55 -466.42 -2.59 -14.92 16 10 C 0.13 2.22 5.67 86.38 0.49 2.71 16 11 C -0.13 -2.13 5.65 30.59 0.17 -1.95 16 12 C 0.12 2.16 5.41 86.38 0.47 2.63 16 13 N -0.61 -13.68 2.87 -846.77 -2.43 -16.11 16 14 C 0.07 0.98 10.24 127.77 1.31 2.29 16 15 C 0.53 17.90 7.69 87.66 0.67 18.57 16 16 O -0.56 -23.69 15.44 -3.04 -0.05 -23.74 16 17 C -0.11 -3.92 4.71 71.24 0.34 -3.58 16 18 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 19 C -0.53 -30.44 10.04 67.96 0.68 -29.76 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 21 C 0.05 2.71 5.50 84.86 0.47 3.17 16 22 N -0.92 -55.30 13.97 21.65 0.30 -55.00 16 23 Si 0.91 44.89 27.74 68.60 1.90 46.79 16 24 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 29 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 30 H 0.25 0.25 8.06 -2.91 -0.02 0.23 16 31 H 0.18 1.30 7.74 -2.91 -0.02 1.28 16 32 H 0.41 5.20 7.64 -92.71 -0.71 4.49 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.12 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.06 1.54 7.42 -2.39 -0.02 1.52 16 39 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.07 1.14 6.44 -2.39 -0.02 1.13 16 41 H 0.10 0.82 8.07 -2.39 -0.02 0.80 16 42 H 0.11 3.80 7.40 -2.40 -0.02 3.78 16 43 H 0.11 3.78 8.11 -2.40 -0.02 3.77 16 44 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -82.26 389.76 3.39 -78.87 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.27 Total: 11.52 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 7.05 Total: 1.64 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -4.72 Total: -86.03 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.06 Total: -42.69 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -82.26 3.39 -78.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687377695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.055 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds