Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47051 * 2 1 4 4 C 1.50698 * 109.46966 * 120.00153 * 2 1 3 5 5 O 1.21288 * 120.00141 * 115.56523 * 4 2 1 6 6 N 1.34782 * 120.00111 * 295.55767 * 4 2 1 7 7 C 1.46498 * 120.00044 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47124 * 180.02562 * 7 6 4 9 9 H 1.08995 * 109.46770 * 59.99961 * 8 7 6 10 10 O 1.42909 * 109.46945 * 300.00096 * 8 7 6 11 11 C 1.53000 * 109.47147 * 180.02562 * 8 7 6 12 12 N 1.46503 * 109.47091 * 185.00085 * 11 8 7 13 13 C 1.36929 * 120.00235 * 179.97438 * 12 11 8 14 14 H 1.08006 * 119.99533 * 359.97438 * 13 12 11 15 15 C 1.38805 * 120.00274 * 180.02562 * 13 12 11 16 16 N 1.31621 * 120.00251 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00144 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47316 * 59.99278 * 17 15 13 19 19 H 1.48500 * 109.47215 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46879 * 299.99352 * 17 15 13 21 21 C 1.50702 * 109.47005 * 240.00144 * 2 1 3 22 22 C 1.38239 * 119.98862 * 125.66077 * 21 2 1 23 23 C 1.38207 * 120.01143 * 179.72493 * 22 21 2 24 24 C 1.38350 * 119.98998 * 0.54581 * 23 22 21 25 25 Cl 1.73600 * 120.01834 * 179.70152 * 24 23 22 26 26 C 1.38356 * 119.97155 * 359.72797 * 24 23 22 27 27 C 1.38213 * 119.98832 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.47097 * 299.99663 * 1 2 3 29 29 H 1.09000 * 109.47316 * 59.99749 * 1 2 3 30 30 H 1.09003 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47265 * 300.00282 * 3 2 1 33 33 H 1.09002 * 109.47400 * 60.00242 * 3 2 1 34 34 H 0.97001 * 119.99289 * 0.02562 * 6 4 2 35 35 H 1.09000 * 109.46974 * 60.00192 * 7 6 4 36 36 H 1.08994 * 109.47428 * 300.00443 * 7 6 4 37 37 H 0.96703 * 113.99614 * 299.99899 * 10 8 7 38 38 H 1.09003 * 109.46837 * 304.99482 * 11 8 7 39 39 H 1.08996 * 109.47371 * 65.00061 * 11 8 7 40 40 H 0.96998 * 119.99926 * 359.97438 * 12 11 8 41 41 H 0.96996 * 120.00066 * 180.02562 * 16 15 13 42 42 H 1.08004 * 119.98824 * 359.97438 * 22 21 2 43 43 H 1.08010 * 120.00690 * 180.27228 * 23 22 21 44 44 H 1.07997 * 120.00614 * 179.97438 * 26 24 23 45 45 H 1.08000 * 119.99511 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6618 -1.7414 1.1210 6 7 1.7822 -0.2001 2.4526 7 6 2.2709 -0.8905 3.6487 8 6 1.8535 -0.1081 4.8955 9 1 0.7664 -0.0395 4.9343 10 8 2.4122 1.2062 4.8423 11 6 2.3646 -0.8287 6.1447 12 7 1.8647 -0.1464 7.3409 13 6 2.1938 -0.6155 8.5845 14 1 2.8215 -1.4888 8.6835 15 6 1.7197 0.0306 9.7179 16 7 0.9543 1.0945 9.5973 17 14 2.1693 -0.6090 11.4145 18 1 3.6450 -0.5839 11.5779 19 1 1.5422 0.2512 12.4499 20 1 1.6783 -2.0025 11.5642 21 6 2.0323 -0.7104 -1.2305 22 6 2.9207 -0.0773 -2.0796 23 6 3.3861 -0.7304 -3.2051 24 6 2.9540 -2.0139 -3.4882 25 17 3.5321 -2.8321 -4.9059 26 6 2.0604 -2.6449 -2.6410 27 6 1.5996 -1.9927 -1.5130 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.2785 0.6242 2.5401 35 1 3.3580 -0.9595 3.6096 36 1 1.8446 -1.8928 3.6895 37 1 3.3784 1.2216 4.8059 38 1 2.0105 -1.8596 6.1398 39 1 3.4545 -0.8189 6.1496 40 1 1.3006 0.6376 7.2519 41 1 0.6233 1.5462 10.3893 42 1 3.2543 0.9264 -1.8610 43 1 4.0836 -0.2374 -3.8661 44 1 1.7224 -3.6466 -2.8616 45 1 0.9018 -2.4850 -0.8518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699058845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -90.380550 kcal Electronic energy + Delta-G solvation = -26629.342672 eV Core-core repulsion = 22671.504194 eV Total energy + Delta-G solvation = -3957.838478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72081 -40.00069 -38.89807 -37.56229 -36.15805 -36.05317 -35.17641 -33.19247 -32.18541 -30.95588 -30.09634 -28.36260 -27.16629 -25.14787 -24.32815 -23.49999 -22.78765 -22.61314 -20.47248 -19.22784 -18.64373 -17.97735 -17.51715 -17.17227 -16.78345 -16.48141 -16.35232 -15.81757 -15.63502 -15.49111 -15.26319 -14.97303 -14.75722 -14.54796 -14.31963 -14.22924 -13.91573 -13.55857 -13.33286 -13.26648 -13.12422 -12.95691 -12.86238 -12.72239 -12.70064 -12.40868 -12.20511 -12.08060 -11.98810 -11.92785 -11.80267 -11.60918 -11.09385 -10.96484 -10.67528 -10.11748 -9.97172 -9.56341 -9.01216 -7.95018 -5.24405 0.12086 0.35143 1.14765 1.47758 1.50483 1.56742 1.61939 2.08493 2.55801 2.70718 3.36105 3.41657 3.49322 3.60073 3.67555 3.84734 3.94922 4.00486 4.03410 4.06783 4.22121 4.36907 4.41387 4.49047 4.62121 4.68119 4.71913 4.74686 4.81853 4.85043 4.88764 4.93705 4.98700 5.19052 5.21768 5.22310 5.28837 5.32016 5.37889 5.47935 5.56492 5.82365 6.26085 6.53178 6.80157 7.22402 7.33425 8.08596 8.31877 9.27790 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.001774 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.641671 B =15783.430716 C =16218.889514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.036 4.036 3 C -0.146 4.146 4 C 0.519 3.481 5 O -0.575 6.575 6 N -0.708 5.708 7 C 0.103 3.897 8 C 0.110 3.890 9 H 0.101 0.899 10 O -0.561 6.561 11 C 0.122 3.878 12 N -0.739 5.739 13 C -0.251 4.251 14 H 0.075 0.925 15 C -0.074 4.074 16 N -0.966 5.966 17 Si 0.974 3.026 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.278 1.278 21 C -0.065 4.065 22 C -0.104 4.104 23 C -0.117 4.117 24 C -0.046 4.046 25 Cl -0.076 7.076 26 C -0.121 4.121 27 C -0.089 4.089 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.385 0.615 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.158 0.842 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -0.570 -30.361 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 C -0.203 4.203 4 C 0.306 3.694 5 O -0.454 6.454 6 N -0.360 5.360 7 C -0.022 4.022 8 C 0.050 3.950 9 H 0.119 0.881 10 O -0.367 6.367 11 C -0.006 4.006 12 N -0.382 5.382 13 C -0.383 4.383 14 H 0.093 0.907 15 C -0.266 4.266 16 N -0.617 5.617 17 Si 0.803 3.197 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.204 1.204 21 C -0.065 4.065 22 C -0.122 4.122 23 C -0.135 4.135 24 C -0.073 4.073 25 Cl -0.047 7.047 26 C -0.140 4.140 27 C -0.107 4.107 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.176 0.824 43 H 0.167 0.833 44 H 0.157 0.843 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.051 -1.323 -30.410 30.457 hybrid contribution 0.435 -0.300 1.129 1.246 sum 1.486 -1.623 -29.281 29.364 Atomic orbital electron populations 1.21942 0.89964 1.03136 1.04624 1.19725 0.98541 0.96793 0.88810 1.22043 1.01817 0.91551 1.04930 1.20887 0.78859 0.84551 0.85071 1.90717 1.41823 1.25718 1.87186 1.45779 1.56967 1.28559 1.04668 1.21813 1.00005 0.96376 0.84042 1.22070 0.98944 0.82745 0.91247 0.88085 1.86554 1.26604 1.26990 1.96585 1.21412 0.97004 0.95484 0.86651 1.42392 1.60769 1.34087 1.00933 1.19599 1.24822 1.08946 0.84891 0.90694 1.25578 1.00931 0.98518 1.01617 1.69818 1.40090 1.22679 1.29082 0.85211 0.77731 0.77338 0.79447 1.20424 1.22089 1.20404 1.19615 0.97265 0.94474 0.95182 1.21389 0.96019 1.01420 0.93391 1.21272 1.00713 0.92959 0.98570 1.21098 1.00297 0.94827 0.91069 1.98364 1.87996 1.79161 1.39174 1.21161 0.97477 1.00923 0.94445 1.20996 0.99556 0.94408 0.95764 0.90302 0.89386 0.92458 0.91818 0.88789 0.90363 0.74829 0.91152 0.90897 0.76640 0.95056 0.95280 0.79078 0.93965 0.82432 0.83253 0.84308 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.16 71.98 0.59 -1.01 16 2 C -0.04 -0.53 0.72 -53.68 -0.04 -0.57 16 3 C -0.15 -1.48 7.00 71.98 0.50 -0.97 16 4 C 0.52 11.31 6.40 87.66 0.56 11.88 16 5 O -0.58 -17.39 15.33 -3.05 -0.05 -17.44 16 6 N -0.71 -13.92 5.27 -463.06 -2.44 -16.36 16 7 C 0.10 2.42 5.34 86.38 0.46 2.88 16 8 C 0.11 3.07 3.09 30.59 0.09 3.17 16 9 H 0.10 2.94 8.14 -2.39 -0.02 2.93 16 10 O -0.56 -15.79 13.03 -148.98 -1.94 -17.73 16 11 C 0.12 4.50 5.90 86.38 0.51 5.01 16 12 N -0.74 -36.63 5.55 -343.45 -1.91 -38.53 16 13 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 14 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 15 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 16 N -0.97 -58.84 13.06 21.65 0.28 -58.56 16 17 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.06 -1.12 4.33 -19.86 -0.09 -1.21 16 22 C -0.10 -1.55 8.99 22.26 0.20 -1.35 16 23 C -0.12 -1.80 9.83 22.29 0.22 -1.58 16 24 C -0.05 -0.83 6.32 22.32 0.14 -0.69 16 25 Cl -0.08 -1.27 28.96 -2.72 -0.08 -1.34 16 26 C -0.12 -2.24 9.83 22.29 0.22 -2.02 16 27 C -0.09 -1.71 8.15 22.27 0.18 -1.53 16 28 H 0.08 0.76 7.88 -2.39 -0.02 0.74 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.75 7.08 -2.39 -0.02 0.74 16 31 H 0.06 0.71 7.25 -2.39 -0.02 0.69 16 32 H 0.09 0.59 7.78 -2.39 -0.02 0.58 16 33 H 0.08 0.69 7.33 -2.39 -0.02 0.67 16 34 H 0.41 6.69 7.24 -92.71 -0.67 6.02 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.38 8.83 9.04 -74.06 -0.67 8.16 16 38 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.38 20.16 7.67 -92.71 -0.71 19.45 16 41 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.16 1.54 5.91 -2.91 -0.02 1.53 16 43 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.13 2.39 7.23 -2.91 -0.02 2.36 16 Total: -1.00 -71.54 387.11 -0.26 -71.80 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -1.02 Total: 35.17 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 4.86 Total: -4.78 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -4.06 Total: -113.45 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -1.99 Total: -35.17 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.34 kcal Total: -71.54 -0.26 -71.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699058845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.585 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds