Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 O 1.33655 * 125.80192 * 270.34909 * 3 2 1 5 5 C 1.34213 * 110.91275 * 180.14449 * 4 3 2 6 6 C 1.34178 * 109.12071 * 359.54836 * 5 4 3 7 7 C 1.36414 * 125.80485 * 89.99521 * 3 2 1 8 8 C 1.47377 * 127.19315 * 0.03784 * 7 3 2 9 9 O 1.21617 * 120.00022 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00392 * 179.97438 * 8 7 3 11 11 C 1.46504 * 119.99928 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46848 * 180.02562 * 11 10 8 13 13 C 1.52992 * 109.46827 * 180.02562 * 12 11 10 14 14 N 1.46505 * 109.46826 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99536 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00506 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99529 * 180.02562 * 15 14 13 18 18 S 1.80993 * 109.47089 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00222 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99883 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00114 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00228 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99823 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47070 * 90.00136 * 23 21 19 25 25 H 1.48504 * 109.47012 * 209.99948 * 23 21 19 26 26 H 1.48498 * 109.47391 * 330.00238 * 23 21 19 27 27 H 1.08991 * 109.47332 * 300.00423 * 1 2 3 28 28 H 1.09005 * 109.46497 * 60.00672 * 1 2 3 29 29 H 1.08996 * 109.46844 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47052 * 239.99496 * 2 1 3 31 31 H 1.09000 * 109.46447 * 119.99833 * 2 1 3 32 32 H 1.08002 * 125.44315 * 179.81711 * 5 4 3 33 33 H 1.08004 * 127.02354 * 180.30025 * 6 5 4 34 34 H 0.96994 * 119.99598 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47042 * 299.99431 * 11 10 8 36 36 H 1.08999 * 109.47079 * 59.99891 * 11 10 8 37 37 H 1.09005 * 109.46852 * 300.00022 * 12 11 10 38 38 H 1.08997 * 109.46874 * 59.99957 * 12 11 10 39 39 H 1.09005 * 109.47293 * 299.99594 * 13 12 11 40 40 H 1.08997 * 109.47558 * 60.00217 * 13 12 11 41 41 H 0.96995 * 120.00407 * 0.02562 * 14 13 12 42 42 H 1.09005 * 109.46748 * 299.99894 * 17 15 14 43 43 H 1.08999 * 109.47490 * 59.99940 * 17 15 14 44 44 H 0.96994 * 119.99740 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2868 2.1601 -1.0840 5 6 2.7241 3.3812 -0.7391 6 6 2.7575 3.4745 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1553 1.7667 2.5157 9 8 1.7605 0.6494 2.7892 10 7 2.4620 2.6331 3.5015 11 6 2.3192 2.2291 4.9025 12 6 2.7291 3.3891 5.8120 13 6 2.5806 2.9670 7.2751 14 7 2.9737 4.0775 8.1460 15 6 2.9231 3.9341 9.4852 16 8 2.5527 2.8857 9.9693 17 6 3.3269 5.0767 10.3811 18 16 3.1500 4.5778 12.1119 19 6 3.6739 6.0577 12.9120 20 1 3.9759 6.9117 12.3239 21 6 3.6974 6.1263 14.2981 22 7 3.3288 5.0857 15.0150 23 14 4.2535 7.6950 15.1462 24 1 3.0813 8.5789 15.3702 25 1 4.8759 7.3579 16.4517 26 1 5.2452 8.3953 14.2911 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0006 4.1652 -1.4286 33 1 3.0593 4.3307 1.1839 34 1 2.7765 3.5243 3.2833 35 1 1.2809 1.9626 5.0998 36 1 2.9589 1.3688 5.0995 37 1 3.7674 3.6561 5.6148 38 1 2.0891 4.2490 5.6148 39 1 1.5425 2.6997 7.4726 40 1 3.2210 2.1072 7.4720 41 1 3.2696 4.9162 7.7589 42 1 4.3652 5.3436 10.1838 43 1 2.6869 5.9367 10.1840 44 1 3.3456 5.1336 15.9836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703318639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -105.684975 kcal Electronic energy + Delta-G solvation = -25011.003533 eV Core-core repulsion = 21054.545112 eV Total energy + Delta-G solvation = -3956.458421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.56271 -40.69329 -40.41337 -37.26158 -35.61838 -34.95425 -34.57596 -33.85862 -32.51171 -30.56019 -29.72589 -27.70499 -26.75760 -24.77975 -23.80227 -22.88924 -21.98572 -21.67253 -20.73116 -19.80873 -18.84056 -17.74669 -17.51267 -17.33490 -17.06484 -16.87493 -16.83608 -16.60658 -16.31795 -15.83350 -15.45743 -15.39191 -15.30657 -14.72621 -14.55307 -14.34759 -14.08261 -13.91737 -13.58950 -13.36830 -13.31825 -13.16275 -13.14706 -12.88167 -12.62411 -12.58763 -12.49640 -12.09673 -11.98445 -11.72285 -11.13460 -11.12345 -10.95192 -10.84647 -10.26203 -10.16803 -10.10870 -9.55098 -8.66173 -8.33815 -6.12152 0.30982 1.13601 1.27685 1.43461 1.47942 1.57991 1.62166 1.80434 2.10663 2.28226 2.30176 2.43337 3.00495 3.33113 3.55147 3.71525 3.84571 3.92540 3.96717 3.97136 4.13013 4.14248 4.28097 4.31962 4.43226 4.51568 4.52785 4.56678 4.60344 4.72444 4.80060 4.93964 5.00947 5.06031 5.08848 5.11590 5.25501 5.36149 5.41813 5.42718 5.44662 6.04436 6.20626 6.50667 6.53950 7.07511 7.18840 7.26477 8.75435 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033709 B = 0.001369 C = 0.001323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.442688 B =20450.924853 C =21156.258911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C 0.068 3.932 4 O -0.184 6.184 5 C -0.033 4.033 6 C -0.195 4.195 7 C -0.267 4.267 8 C 0.583 3.417 9 O -0.577 6.577 10 N -0.709 5.709 11 C 0.125 3.875 12 C -0.121 4.121 13 C 0.121 3.879 14 N -0.710 5.710 15 C 0.531 3.469 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.157 6.157 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.257 1.257 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.185 0.815 34 H 0.416 0.584 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.419 0.581 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 0.517 -37.878 37.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.091 4.091 3 C 0.014 3.986 4 O -0.079 6.079 5 C -0.098 4.098 6 C -0.214 4.214 7 C -0.272 4.272 8 C 0.372 3.628 9 O -0.458 6.458 10 N -0.361 5.361 11 C 0.001 3.999 12 C -0.159 4.159 13 C -0.003 4.003 14 N -0.365 5.365 15 C 0.317 3.683 16 O -0.447 6.447 17 C -0.280 4.280 18 S 0.071 5.929 19 C -0.694 4.694 20 H 0.103 0.897 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.181 1.181 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.263 0.737 33 H 0.202 0.798 34 H 0.253 0.747 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.257 0.743 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.191 -2.161 -37.017 37.099 hybrid contribution 0.891 2.498 0.406 2.683 sum -0.300 0.337 -36.611 36.613 Atomic orbital electron populations 1.21648 0.92903 1.03366 1.01666 1.20401 0.97333 0.86263 1.05126 1.23089 0.97075 0.94908 0.83495 1.83793 1.65182 1.24155 1.34810 1.24734 1.02063 0.85803 0.97165 1.23196 1.05736 0.97303 0.95152 1.21247 1.15292 0.97636 0.93014 1.17505 0.76473 0.84114 0.84736 1.90762 1.48465 1.21932 1.84668 1.45584 1.67663 1.17466 1.05384 1.21151 1.01685 0.97603 0.79479 1.21792 1.04785 0.98518 0.90844 1.21213 1.00424 0.89385 0.89276 1.45653 1.68388 1.18274 1.04160 1.20107 0.76733 0.88030 0.83422 1.90702 1.47719 1.30467 1.75795 1.23370 1.06160 1.00414 0.98039 1.85632 1.87788 1.23063 0.96464 1.23218 1.51480 1.00021 0.94679 0.89746 1.26139 0.94677 1.01212 0.97152 1.70190 1.46044 1.31829 1.06789 0.84942 0.78714 0.76888 0.77354 1.19323 1.20415 1.18080 0.93943 0.91780 0.90095 0.88179 0.88578 0.73675 0.79784 0.74690 0.91984 0.91947 0.88290 0.88296 0.92350 0.92345 0.74319 0.86997 0.86985 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.90 71.98 0.71 -1.14 16 2 C -0.05 -0.79 5.94 29.85 0.18 -0.61 16 3 C 0.07 1.10 6.63 25.26 0.17 1.26 16 4 O -0.18 -2.46 10.52 4.47 0.05 -2.41 16 5 C -0.03 -0.24 12.03 66.89 0.80 0.56 16 6 C -0.20 -1.75 10.60 23.65 0.25 -1.50 16 7 C -0.27 -4.35 6.31 -18.99 -0.12 -4.47 16 8 C 0.58 11.46 7.81 86.65 0.68 12.14 16 9 O -0.58 -15.46 14.84 -4.08 -0.06 -15.52 16 10 N -0.71 -9.36 5.55 -466.40 -2.59 -11.95 16 11 C 0.13 1.81 5.67 86.38 0.49 2.30 16 12 C -0.12 -1.24 5.44 30.59 0.17 -1.07 16 13 C 0.12 2.38 5.67 86.38 0.49 2.87 16 14 N -0.71 -15.95 5.56 -463.06 -2.57 -18.52 16 15 C 0.53 18.97 7.85 87.66 0.69 19.66 16 16 O -0.57 -26.30 15.86 -3.01 -0.05 -26.35 16 17 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 18 S -0.16 -8.66 20.57 -56.49 -1.16 -9.82 16 19 C -0.55 -30.92 9.50 67.95 0.65 -30.28 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.73 5.49 84.86 0.47 1.19 16 22 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 23 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 27 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.76 6.48 -2.39 -0.02 1.75 16 32 H 0.25 -0.43 8.06 -2.91 -0.02 -0.45 16 33 H 0.18 0.42 7.74 -2.91 -0.02 0.40 16 34 H 0.42 2.74 7.64 -92.71 -0.71 2.03 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 41 H 0.42 5.97 8.47 -92.71 -0.79 5.19 16 42 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 43 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -86.51 394.22 1.52 -84.99 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.46 Total: 13.66 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 6.05 Total: -3.56 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -4.88 Total: -86.21 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.06 Total: -44.28 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -86.51 1.52 -84.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703318639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.699 kcal (2) G-P(sol) polarization free energy of solvation -86.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds