Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.33658 * 125.80735 * 2 1 4 4 C 1.34215 * 110.91077 * 180.28998 * 3 2 1 5 5 C 1.34177 * 109.12448 * 359.72677 * 4 3 2 6 6 C 1.36422 * 125.80119 * 179.82096 * 2 1 3 7 7 C 1.47379 * 127.19028 * 359.97438 * 6 2 1 8 8 O 1.21613 * 119.99947 * 359.71711 * 7 6 2 9 9 N 1.34770 * 119.99909 * 179.71502 * 7 6 2 10 10 C 1.46506 * 120.00207 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47390 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47159 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46427 * 55.00086 * 12 11 10 14 14 C 1.53001 * 109.47065 * 174.99654 * 12 11 10 15 15 N 1.46497 * 109.47036 * 294.99799 * 12 11 10 16 16 C 1.34777 * 119.99525 * 154.99621 * 15 12 11 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 12 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 12 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.09000 * 109.47199 * 270.18895 * 1 2 3 29 29 H 1.09005 * 109.47162 * 30.18467 * 1 2 3 30 30 H 1.08999 * 109.47713 * 150.18557 * 1 2 3 31 31 H 1.07995 * 125.43759 * 179.72737 * 4 3 2 32 32 H 1.07996 * 127.02046 * 179.97438 * 5 4 3 33 33 H 0.97004 * 120.00257 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47234 * 59.99284 * 10 9 7 35 35 H 1.09008 * 109.46320 * 299.99951 * 10 9 7 36 36 H 1.09002 * 109.47208 * 59.99941 * 11 10 9 37 37 H 1.09003 * 109.47291 * 299.99777 * 11 10 9 38 38 H 1.08998 * 109.46617 * 180.02562 * 14 12 11 39 39 H 1.09003 * 109.47371 * 300.00160 * 14 12 11 40 40 H 1.09002 * 109.46839 * 60.00194 * 14 12 11 41 41 H 0.97000 * 120.00580 * 335.00367 * 15 12 11 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7389 -0.0063 5 6 3.6849 -0.5992 -0.0047 6 6 2.3049 -1.1064 0.0035 7 6 1.8738 -2.5158 0.0084 8 8 0.6889 -2.7891 0.0149 9 7 2.7928 -3.5015 0.0056 10 6 2.3643 -4.9025 0.0099 11 6 3.5945 -5.8121 0.0061 12 6 3.1469 -7.2753 0.0113 13 1 2.4731 -7.4520 -0.8271 14 6 4.3713 -8.1836 -0.1182 15 7 2.4518 -7.5688 1.2670 16 6 1.5528 -8.5715 1.3209 17 8 1.3196 -9.2310 0.3302 18 6 0.8422 -8.8775 2.6142 19 16 -0.2861 -10.2711 2.3675 20 6 -0.9617 -10.4086 3.9890 21 1 -0.6403 -9.7321 4.7671 22 6 -1.9078 -11.3856 4.2662 23 7 -2.4129 -11.4880 5.4774 24 14 -2.4643 -12.5553 2.9203 25 1 -1.5898 -13.7554 2.9146 26 1 -3.8687 -12.9675 3.1720 27 1 -2.3771 -11.8730 1.6042 28 1 -0.3633 0.0034 1.0277 29 1 -0.3634 0.8884 -0.5167 30 1 -0.3634 -0.8916 -0.5109 31 1 4.4172 1.4283 -0.0119 32 1 4.5927 -1.1841 -0.0089 33 1 3.7380 -3.2835 0.0007 34 1 1.7624 -5.1011 -0.8767 35 1 1.7710 -5.0981 0.9032 36 1 4.1960 -5.6134 0.8932 37 1 4.1883 -5.6166 -0.8868 38 1 4.0524 -9.2259 -0.1150 39 1 4.8886 -7.9651 -1.0525 40 1 5.0452 -8.0068 0.7201 41 1 2.6384 -7.0416 2.0595 42 1 1.5748 -9.1342 3.3795 43 1 0.2750 -8.0030 2.9330 44 1 -3.0738 -12.1711 5.6712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704123993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -74.298793 kcal Electronic energy + Delta-G solvation = -25863.574678 eV Core-core repulsion = 21908.477264 eV Total energy + Delta-G solvation = -3955.097414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.99578 -39.87659 -39.36609 -36.69913 -34.74386 -33.45149 -32.41939 -32.30695 -31.83887 -29.57112 -28.59013 -27.25357 -25.59243 -24.52834 -22.95058 -21.68208 -21.33767 -20.44436 -20.11492 -18.34513 -17.81801 -16.80156 -16.66288 -16.41958 -16.17747 -15.92639 -15.44710 -15.08535 -14.93208 -14.81161 -14.27218 -13.84052 -13.69692 -13.60786 -13.50272 -13.38165 -13.31210 -13.25130 -12.94515 -12.77356 -12.26366 -12.15133 -12.04806 -11.81141 -11.58868 -11.24198 -11.14803 -10.98874 -10.57750 -10.27175 -10.24529 -9.83572 -9.49665 -9.41750 -9.03123 -8.98118 -8.95392 -8.47764 -6.89192 -6.26742 -3.98190 0.98193 1.59492 2.36137 2.78224 2.88621 2.98866 3.05602 3.31735 3.35609 3.52714 3.67216 4.06630 4.34297 4.35240 4.42045 4.42694 4.61847 4.69053 4.78555 4.85666 5.05523 5.12287 5.16463 5.17831 5.21334 5.23770 5.30900 5.34793 5.42193 5.53410 5.59515 5.71679 5.76111 5.79064 5.84047 5.92745 6.04119 6.09996 6.12037 6.56957 6.57466 7.18443 7.61138 7.94249 7.96351 8.43970 8.50658 9.19488 10.82499 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002016 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.059019 B =13882.908835 C =15207.701241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.083 3.917 3 O -0.177 6.177 4 C -0.038 4.038 5 C -0.190 4.190 6 C -0.250 4.250 7 C 0.588 3.412 8 O -0.535 6.535 9 N -0.724 5.724 10 C 0.118 3.882 11 C -0.138 4.138 12 C 0.147 3.853 13 H 0.092 0.908 14 C -0.163 4.163 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.208 0.792 32 H 0.156 0.844 33 H 0.399 0.601 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.398 0.602 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.766 25.176 -12.206 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 O -0.073 6.073 4 C -0.104 4.104 5 C -0.209 4.209 6 C -0.254 4.254 7 C 0.376 3.624 8 O -0.414 6.414 9 N -0.376 5.376 10 C -0.006 4.006 11 C -0.176 4.176 12 C 0.042 3.958 13 H 0.110 0.890 14 C -0.221 4.221 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.225 0.775 32 H 0.174 0.826 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.233 0.767 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.289 24.052 -13.739 32.134 hybrid contribution 0.886 0.408 1.332 1.651 sum 17.175 24.459 -12.407 32.360 Atomic orbital electron populations 1.20660 0.83562 1.05241 1.04691 1.22902 0.94233 0.83055 0.96866 1.83790 1.17179 1.35029 1.71252 1.23867 0.83589 0.96411 1.06535 1.22844 0.96537 0.94596 1.06914 1.21147 0.93348 0.93851 1.17073 1.17190 0.85488 0.83729 0.75993 1.90810 1.16519 1.83986 1.50057 1.45760 1.09598 1.06185 1.76059 1.21428 0.96875 0.78780 1.03468 1.22109 0.97625 0.94114 1.03742 1.20787 0.94351 0.92366 0.88343 0.89022 1.22173 0.97218 1.01041 1.01681 1.46090 1.43490 1.36220 1.13047 1.20267 0.78405 0.79210 0.90226 1.90697 1.63433 1.48465 1.36675 1.23288 1.02296 1.04570 0.97410 1.84772 1.49440 1.38820 1.18494 1.22320 1.28412 1.22019 0.94088 0.89403 1.24719 0.94599 0.96470 0.95582 1.69941 1.28429 1.33880 1.19473 0.86729 0.78783 0.82309 0.83997 1.19240 1.19959 1.15898 0.89070 0.90282 0.87139 0.77547 0.82604 0.76683 0.90973 0.90728 0.90558 0.89702 0.91464 0.91828 0.92462 0.76745 0.88552 0.88463 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 9.88 36.00 0.36 -0.30 16 2 C 0.08 0.75 7.37 -34.97 -0.26 0.49 16 3 O -0.18 -1.42 10.52 7.64 0.08 -1.34 16 4 C -0.04 -0.21 12.03 29.30 0.35 0.14 16 5 C -0.19 -1.18 10.60 -37.45 -0.40 -1.58 16 6 C -0.25 -2.33 6.31 -103.27 -0.65 -2.98 16 7 C 0.59 6.52 7.81 -12.54 -0.10 6.42 16 8 O -0.54 -7.84 14.85 5.27 0.08 -7.77 16 9 N -0.72 -5.90 5.55 -61.40 -0.34 -6.24 16 10 C 0.12 1.06 5.56 -4.04 -0.02 1.04 16 11 C -0.14 -0.89 4.87 -26.73 -0.13 -1.02 16 12 C 0.15 1.46 2.57 -67.93 -0.17 1.28 16 13 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 14 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 15 N -0.73 -8.76 4.53 -53.80 -0.24 -9.00 16 16 C 0.53 9.25 7.81 -10.98 -0.09 9.17 16 17 O -0.52 -10.95 15.53 5.55 0.09 -10.87 16 18 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.82 13.97 55.49 0.78 -26.04 16 24 Si 0.86 22.02 27.74 -169.99 -4.72 17.31 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.11 1.02 6.49 -51.93 -0.34 0.69 16 31 H 0.21 0.31 8.06 -52.49 -0.42 -0.11 16 32 H 0.16 0.51 7.74 -52.49 -0.41 0.11 16 33 H 0.40 2.04 7.64 -40.82 -0.31 1.73 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.80 7.75 -51.92 -0.40 0.40 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.40 3.73 8.60 -40.82 -0.35 3.38 16 42 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 43 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -37.64 389.82 -7.15 -44.79 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.43 Total: 1.74 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.32 Total: -2.84 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.19 Total: -41.28 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.24 Total: -19.97 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.64 -7.15 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704123993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.508 kcal (2) G-P(sol) polarization free energy of solvation -37.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds