Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.33658 * 125.80735 * 2 1 4 4 C 1.34215 * 110.91077 * 180.28998 * 3 2 1 5 5 C 1.34177 * 109.12448 * 359.72677 * 4 3 2 6 6 C 1.36422 * 125.80119 * 179.82096 * 2 1 3 7 7 C 1.47379 * 127.19028 * 359.97438 * 6 2 1 8 8 O 1.21613 * 119.99947 * 359.71711 * 7 6 2 9 9 N 1.34770 * 119.99909 * 179.71502 * 7 6 2 10 10 C 1.46506 * 120.00207 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47390 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47159 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46427 * 55.00086 * 12 11 10 14 14 C 1.53001 * 109.47065 * 174.99654 * 12 11 10 15 15 N 1.46497 * 109.47036 * 294.99799 * 12 11 10 16 16 C 1.34777 * 119.99525 * 154.99621 * 15 12 11 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 12 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 12 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.09000 * 109.47199 * 270.18895 * 1 2 3 29 29 H 1.09005 * 109.47162 * 30.18467 * 1 2 3 30 30 H 1.08999 * 109.47713 * 150.18557 * 1 2 3 31 31 H 1.07995 * 125.43759 * 179.72737 * 4 3 2 32 32 H 1.07996 * 127.02046 * 179.97438 * 5 4 3 33 33 H 0.97004 * 120.00257 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47234 * 59.99284 * 10 9 7 35 35 H 1.09008 * 109.46320 * 299.99951 * 10 9 7 36 36 H 1.09002 * 109.47208 * 59.99941 * 11 10 9 37 37 H 1.09003 * 109.47291 * 299.99777 * 11 10 9 38 38 H 1.08998 * 109.46617 * 180.02562 * 14 12 11 39 39 H 1.09003 * 109.47371 * 300.00160 * 14 12 11 40 40 H 1.09002 * 109.46839 * 60.00194 * 14 12 11 41 41 H 0.97000 * 120.00580 * 335.00367 * 15 12 11 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7389 -0.0063 5 6 3.6849 -0.5992 -0.0047 6 6 2.3049 -1.1064 0.0035 7 6 1.8738 -2.5158 0.0084 8 8 0.6889 -2.7891 0.0149 9 7 2.7928 -3.5015 0.0056 10 6 2.3643 -4.9025 0.0099 11 6 3.5945 -5.8121 0.0061 12 6 3.1469 -7.2753 0.0113 13 1 2.4731 -7.4520 -0.8271 14 6 4.3713 -8.1836 -0.1182 15 7 2.4518 -7.5688 1.2670 16 6 1.5528 -8.5715 1.3209 17 8 1.3196 -9.2310 0.3302 18 6 0.8422 -8.8775 2.6142 19 16 -0.2861 -10.2711 2.3675 20 6 -0.9617 -10.4086 3.9890 21 1 -0.6403 -9.7321 4.7671 22 6 -1.9078 -11.3856 4.2662 23 7 -2.4129 -11.4880 5.4774 24 14 -2.4643 -12.5553 2.9203 25 1 -1.5898 -13.7554 2.9146 26 1 -3.8687 -12.9675 3.1720 27 1 -2.3771 -11.8730 1.6042 28 1 -0.3633 0.0034 1.0277 29 1 -0.3634 0.8884 -0.5167 30 1 -0.3634 -0.8916 -0.5109 31 1 4.4172 1.4283 -0.0119 32 1 4.5927 -1.1841 -0.0089 33 1 3.7380 -3.2835 0.0007 34 1 1.7624 -5.1011 -0.8767 35 1 1.7710 -5.0981 0.9032 36 1 4.1960 -5.6134 0.8932 37 1 4.1883 -5.6166 -0.8868 38 1 4.0524 -9.2259 -0.1150 39 1 4.8886 -7.9651 -1.0525 40 1 5.0452 -8.0068 0.7201 41 1 2.6384 -7.0416 2.0595 42 1 1.5748 -9.1342 3.3795 43 1 0.2750 -8.0030 2.9330 44 1 -3.0738 -12.1711 5.6712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704123993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -102.557354 kcal Electronic energy + Delta-G solvation = -25864.800062 eV Core-core repulsion = 21908.477264 eV Total energy + Delta-G solvation = -3956.322797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.53844 -40.92934 -40.41282 -37.69450 -35.67428 -34.68249 -34.07560 -33.09004 -32.72423 -30.56359 -29.74813 -27.85971 -27.82394 -25.24496 -23.63242 -22.61078 -21.95344 -21.61343 -20.81668 -19.89062 -18.89187 -17.99802 -17.47190 -17.34619 -17.10764 -16.86907 -16.78983 -16.43166 -16.32447 -15.79016 -15.48524 -15.00988 -14.79394 -14.75887 -14.53490 -14.36592 -14.14736 -13.96475 -13.85731 -13.74242 -13.37247 -13.33665 -13.07572 -13.01336 -12.70634 -12.62348 -12.43824 -12.39482 -11.91528 -11.86825 -11.17950 -11.12777 -10.95655 -10.85363 -10.54671 -10.22329 -10.08254 -9.52823 -9.00241 -8.52499 -6.23147 0.30520 0.98758 1.13924 1.30232 1.46292 1.55698 1.58607 1.82154 2.21461 2.23018 2.27534 2.29648 2.71525 2.85562 3.60183 3.71078 3.73206 3.86094 3.90596 3.98608 4.07670 4.21954 4.35002 4.43434 4.45782 4.48731 4.57561 4.60446 4.64684 4.74852 4.82651 4.87513 4.89929 5.03594 5.13367 5.18892 5.34312 5.36523 5.43079 5.54593 5.69753 6.03804 6.10267 6.48214 6.52994 6.92588 7.19824 7.22253 8.59949 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002016 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.059019 B =13882.908835 C =15207.701241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.063 3.937 3 O -0.185 6.185 4 C -0.033 4.033 5 C -0.192 4.192 6 C -0.271 4.271 7 C 0.580 3.420 8 O -0.583 6.583 9 N -0.706 5.706 10 C 0.119 3.881 11 C -0.118 4.118 12 C 0.143 3.857 13 H 0.067 0.933 14 C -0.157 4.157 15 N -0.709 5.709 16 C 0.536 3.464 17 O -0.561 6.561 18 C -0.113 4.113 19 S -0.176 6.176 20 C -0.529 4.529 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.261 1.261 26 H -0.259 1.259 27 H -0.238 1.238 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.249 0.751 32 H 0.188 0.812 33 H 0.417 0.583 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.032 0.968 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.415 0.585 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.965 26.818 -13.143 36.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.010 3.990 3 O -0.081 6.081 4 C -0.098 4.098 5 C -0.211 4.211 6 C -0.276 4.276 7 C 0.369 3.631 8 O -0.465 6.465 9 N -0.358 5.358 10 C -0.005 4.005 11 C -0.156 4.156 12 C 0.038 3.962 13 H 0.085 0.915 14 C -0.215 4.215 15 N -0.364 5.364 16 C 0.322 3.678 17 O -0.439 6.439 18 C -0.264 4.264 19 S 0.051 5.949 20 C -0.677 4.677 21 H 0.080 0.920 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.183 1.183 27 H -0.162 1.162 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.265 0.735 32 H 0.205 0.795 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.252 0.748 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.568 25.738 -14.656 35.499 hybrid contribution 0.032 0.068 1.641 1.643 sum 19.600 25.806 -13.015 34.921 Atomic orbital electron populations 1.20599 0.83582 1.05094 1.04746 1.23080 0.94783 0.83582 0.97569 1.83798 1.18326 1.34731 1.71241 1.24758 0.83309 0.97191 1.04527 1.23192 0.95959 0.95105 1.06850 1.21257 0.95412 0.92858 1.18043 1.17586 0.85178 0.84948 0.75358 1.90784 1.18558 1.84788 1.52385 1.45571 1.10225 1.05294 1.74713 1.21336 0.97877 0.79784 1.01516 1.22006 0.96597 0.90442 1.06570 1.20994 0.94048 0.95011 0.86136 0.91457 1.22119 0.96933 0.98554 1.03910 1.45912 1.41520 1.34159 1.14768 1.19891 0.79130 0.80155 0.88652 1.90686 1.65179 1.50465 1.37618 1.23292 1.01577 1.02087 0.99463 1.84685 1.51437 1.42498 1.16291 1.22465 1.28562 1.21432 0.95214 0.92047 1.25586 0.94757 0.98082 0.97698 1.70018 1.29285 1.34971 1.21202 0.85852 0.79130 0.80263 0.81033 1.18508 1.18326 1.16207 0.88952 0.88389 0.89236 0.73514 0.79504 0.74501 0.93185 0.92752 0.87723 0.86766 0.94860 0.89330 0.90559 0.74839 0.86789 0.87374 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.88 71.23 0.70 -0.66 16 2 C 0.06 1.13 7.37 25.26 0.19 1.32 16 3 O -0.18 -2.69 10.52 4.41 0.05 -2.64 16 4 C -0.03 -0.26 12.03 66.89 0.80 0.54 16 5 C -0.19 -1.82 10.60 23.65 0.25 -1.57 16 6 C -0.27 -4.82 6.31 -18.99 -0.12 -4.94 16 7 C 0.58 12.77 7.81 86.65 0.68 13.44 16 8 O -0.58 -17.96 14.85 -4.07 -0.06 -18.02 16 9 N -0.71 -10.24 5.55 -466.42 -2.59 -12.83 16 10 C 0.12 1.98 5.56 86.38 0.48 2.46 16 11 C -0.12 -1.11 4.87 30.59 0.15 -0.96 16 12 C 0.14 2.53 2.57 44.99 0.12 2.64 16 13 H 0.07 1.58 7.58 -2.38 -0.02 1.57 16 14 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 15 N -0.71 -15.76 4.53 -442.52 -2.00 -17.77 16 16 C 0.54 18.37 7.81 87.66 0.68 19.05 16 17 O -0.56 -23.95 15.53 -3.04 -0.05 -24.00 16 18 C -0.11 -4.35 6.16 71.24 0.44 -3.91 16 19 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 20 C -0.53 -31.41 10.04 67.95 0.68 -30.73 16 21 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 22 C 0.04 2.64 5.50 84.86 0.47 3.10 16 23 N -0.92 -56.66 13.97 21.65 0.30 -56.36 16 24 Si 0.92 45.86 27.74 68.60 1.90 47.76 16 25 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.24 -11.97 6.74 99.48 0.67 -11.30 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.09 1.84 6.49 -2.39 -0.02 1.82 16 31 H 0.25 -0.38 8.06 -2.91 -0.02 -0.40 16 32 H 0.19 0.39 7.74 -2.91 -0.02 0.37 16 33 H 0.42 2.81 7.64 -92.71 -0.71 2.10 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.14 7.75 -2.38 -0.02 1.12 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.41 6.69 8.60 -92.71 -0.80 5.89 16 42 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 43 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 44 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -86.52 389.82 2.20 -84.33 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -0.51 Total: 11.64 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 6.20 Total: -2.01 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -4.29 Total: -86.95 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.06 Total: -44.66 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -86.52 2.20 -84.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704123993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.231 kcal (2) G-P(sol) polarization free energy of solvation -86.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds