Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34170 * 127.02337 * 2 1 4 4 O 1.34222 * 109.12675 * 179.84043 * 3 2 1 5 5 C 1.33654 * 110.90333 * 0.44769 * 4 3 2 6 6 C 1.36410 * 108.39863 * 359.73144 * 5 4 3 7 7 C 1.47385 * 127.19311 * 179.97438 * 6 5 4 8 8 O 1.21616 * 119.99705 * 149.45419 * 7 6 5 9 9 N 1.34770 * 120.00063 * 329.45624 * 7 6 5 10 10 C 1.46505 * 120.00098 * 4.29189 * 9 7 6 11 11 C 1.46501 * 120.00280 * 184.29046 * 9 7 6 12 12 C 1.52997 * 109.47264 * 90.00040 * 11 9 7 13 13 N 1.46499 * 109.47395 * 180.02562 * 12 11 9 14 14 C 1.46500 * 119.99860 * 270.00323 * 13 12 11 15 15 C 1.34775 * 120.00134 * 89.99576 * 13 12 11 16 16 O 1.21279 * 120.00144 * 0.02562 * 15 13 12 17 17 C 1.50701 * 119.99796 * 180.02562 * 15 13 12 18 18 S 1.81005 * 109.47044 * 179.97438 * 17 15 13 19 19 C 1.76196 * 100.00193 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99943 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99963 * 179.97438 * 19 18 17 22 22 N 1.31636 * 119.99815 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00124 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47416 * 89.99693 * 23 21 19 25 25 H 1.48504 * 109.47319 * 209.99436 * 23 21 19 26 26 H 1.48497 * 109.47145 * 329.99432 * 23 21 19 27 27 H 1.09001 * 109.46701 * 269.68286 * 1 2 3 28 28 H 1.08996 * 109.47098 * 149.68768 * 1 2 3 29 29 H 1.08999 * 109.46955 * 29.68145 * 1 2 3 30 30 H 1.08002 * 125.44074 * 0.02562 * 3 2 1 31 31 H 1.08007 * 125.79960 * 179.73460 * 5 4 3 32 32 H 1.08991 * 109.47273 * 95.67375 * 10 9 7 33 33 H 1.08997 * 109.47091 * 215.67875 * 10 9 7 34 34 H 1.09007 * 109.46645 * 335.67192 * 10 9 7 35 35 H 1.09001 * 109.47138 * 210.00381 * 11 9 7 36 36 H 1.09001 * 109.47017 * 329.99917 * 11 9 7 37 37 H 1.09000 * 109.46862 * 299.99972 * 12 11 9 38 38 H 1.09001 * 109.47204 * 59.99991 * 12 11 9 39 39 H 1.08993 * 109.47626 * 89.99598 * 14 13 12 40 40 H 1.09006 * 109.47167 * 209.99721 * 14 13 12 41 41 H 1.09000 * 109.47159 * 329.99412 * 14 13 12 42 42 H 1.08997 * 109.47135 * 299.99603 * 17 15 13 43 43 H 1.09003 * 109.47105 * 60.00363 * 17 15 13 44 44 H 0.96993 * 119.99684 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6587 0.0035 5 6 3.6623 -0.6759 -0.0038 6 6 2.3923 -1.1738 -0.0065 7 6 1.9914 -2.5920 -0.0148 8 8 0.9532 -2.9335 0.5187 9 7 2.7752 -3.5104 -0.6136 10 6 4.0700 -3.1152 -1.1737 11 6 2.3325 -4.9040 -0.7044 12 6 1.5449 -5.1055 -2.0005 13 7 1.1017 -6.4989 -2.0911 14 6 1.9535 -7.4976 -2.7416 15 6 -0.0895 -6.8620 -1.5758 16 8 -0.7948 -6.0352 -1.0375 17 6 -0.5450 -8.2956 -1.6685 18 16 -2.1709 -8.4634 -0.8910 19 6 -2.4515 -10.1854 -1.1369 20 1 -1.7104 -10.7864 -1.6430 21 6 -3.6244 -10.7698 -0.6794 22 7 -3.8337 -12.0564 -0.8627 23 14 -4.9058 -9.7305 0.1964 24 1 -5.8610 -9.1800 -0.7985 25 1 -5.6406 -10.5716 1.1752 26 1 -4.2347 -8.6138 0.9089 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3633 -0.8871 -0.5187 29 1 -0.3633 0.8928 -0.5089 30 1 1.9895 2.1010 0.0004 31 1 4.5703 -1.2609 -0.0071 32 1 4.8566 -3.3140 -0.4459 33 1 4.2625 -3.6861 -2.0819 34 1 4.0540 -2.0511 -1.4099 35 1 3.2014 -5.5621 -0.7012 36 1 1.6955 -5.1392 0.1482 37 1 0.6760 -4.4474 -2.0036 38 1 2.1819 -4.8703 -2.8531 39 1 2.6160 -7.9473 -2.0022 40 1 1.3296 -8.2715 -3.1888 41 1 2.5487 -7.0171 -3.5181 42 1 -0.6110 -8.5888 -2.7162 43 1 0.1706 -8.9381 -1.1556 44 1 -4.6535 -12.4647 -0.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704875540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -36.069027 kcal Electronic energy + Delta-G solvation = -26781.640575 eV Core-core repulsion = 22828.200928 eV Total energy + Delta-G solvation = -3953.439647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.95927 -40.07389 -39.28170 -36.24734 -35.21274 -34.17492 -32.41108 -31.93063 -30.33977 -28.55544 -27.61910 -27.16245 -26.51014 -25.59293 -24.21500 -22.36402 -21.04848 -19.61947 -19.29383 -17.84757 -17.62119 -16.83358 -16.82672 -16.49766 -16.28702 -15.91922 -15.37018 -15.09287 -14.89972 -14.83298 -13.92295 -13.89754 -13.59477 -13.49321 -13.36948 -13.28872 -13.10821 -13.00898 -12.80999 -12.75902 -12.58084 -12.49982 -12.28624 -11.95913 -11.80786 -11.23606 -11.09738 -10.97344 -10.56090 -10.19304 -9.82595 -9.79124 -9.45191 -9.24795 -9.00740 -8.97263 -8.49630 -8.44200 -6.88469 -6.26420 -3.97683 1.04654 1.72665 2.38623 2.60476 2.83663 2.98343 3.00120 3.28992 3.36704 3.55287 3.63818 4.11720 4.20617 4.36486 4.51448 4.60196 4.61630 4.80146 4.81344 4.89870 5.00791 5.05645 5.10664 5.12769 5.16167 5.18327 5.27058 5.38356 5.47299 5.52400 5.61603 5.63787 5.69965 5.76033 5.80148 5.87154 6.02678 6.14282 6.16882 6.57396 6.60358 7.05446 7.43381 7.96683 7.98130 8.43512 8.48022 9.20142 10.82722 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002346 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.909858 B =11933.946665 C =13153.187076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.132 4.132 3 C -0.046 4.046 4 O -0.174 6.174 5 C 0.006 3.994 6 C -0.226 4.226 7 C 0.579 3.421 8 O -0.508 6.508 9 N -0.613 5.613 10 C 0.060 3.940 11 C 0.102 3.898 12 C 0.107 3.893 13 N -0.623 5.623 14 C 0.079 3.921 15 C 0.527 3.473 16 O -0.504 6.504 17 C -0.120 4.120 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.234 1.234 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.208 0.792 31 H 0.217 0.783 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.995 23.741 -3.414 32.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C -0.112 4.112 4 O -0.069 6.069 5 C -0.063 4.063 6 C -0.230 4.230 7 C 0.367 3.633 8 O -0.383 6.383 9 N -0.348 5.348 10 C -0.083 4.083 11 C -0.021 4.021 12 C -0.018 4.018 13 N -0.360 5.360 14 C -0.064 4.064 15 C 0.315 3.685 16 O -0.377 6.377 17 C -0.270 4.270 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.518 5.518 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.158 1.158 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.224 0.776 31 H 0.233 0.767 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.481 24.802 -2.297 32.247 hybrid contribution 0.315 -1.078 -0.410 1.196 sum 20.796 23.723 -2.706 31.664 Atomic orbital electron populations 1.20211 0.88152 1.02916 1.03014 1.21451 0.97363 0.90283 1.04300 1.23723 0.79627 0.99703 1.08122 1.83796 1.29656 1.22376 1.71098 1.24831 0.98874 0.81012 1.01624 1.21427 0.93570 0.94268 1.13757 1.17408 0.83605 0.83817 0.78443 1.90908 1.23580 1.80551 1.43254 1.47594 1.19607 1.09056 1.58555 1.22270 0.84515 1.02329 0.99230 1.21887 0.99604 0.80391 1.00262 1.21683 0.99806 0.83401 0.96897 1.47765 1.19426 1.08889 1.59957 1.21822 0.95029 0.92313 0.97247 1.20383 0.80165 0.90486 0.77505 1.90757 1.53216 1.52519 1.41243 1.23309 1.03422 0.94966 1.05335 1.84870 1.17191 1.13802 1.75765 1.22311 1.08749 0.91299 1.44415 0.89414 1.24708 0.97346 0.94649 0.94610 1.69940 1.26565 1.10152 1.45109 0.86741 0.82530 0.81751 0.80901 1.19213 1.19959 1.15838 0.90691 0.90628 0.91499 0.77555 0.76698 0.92123 0.90711 0.89842 0.90280 0.88793 0.89544 0.90857 0.92606 0.90389 0.91346 0.88561 0.88515 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.04 36.01 0.36 -0.50 16 2 C -0.13 -1.33 6.37 -102.49 -0.65 -1.98 16 3 C -0.05 -0.34 11.96 29.30 0.35 0.01 16 4 O -0.17 -1.32 10.52 7.63 0.08 -1.24 16 5 C 0.01 0.04 9.73 30.07 0.29 0.34 16 6 C -0.23 -2.39 5.78 -103.27 -0.60 -2.98 16 7 C 0.58 7.66 7.61 -12.54 -0.10 7.56 16 8 O -0.51 -9.27 16.00 5.26 0.08 -9.19 16 9 N -0.61 -6.17 2.87 -182.86 -0.53 -6.69 16 10 C 0.06 0.30 9.11 59.85 0.54 0.84 16 11 C 0.10 1.17 5.79 -4.04 -0.02 1.15 16 12 C 0.11 1.30 5.77 -4.04 -0.02 1.27 16 13 N -0.62 -8.50 2.87 -181.58 -0.52 -9.02 16 14 C 0.08 0.74 10.28 59.85 0.62 1.36 16 15 C 0.53 9.94 7.69 -10.99 -0.08 9.85 16 16 O -0.50 -11.70 15.44 5.56 0.09 -11.61 16 17 C -0.12 -2.39 4.71 36.01 0.17 -2.22 16 18 S -0.14 -3.73 18.55 -107.50 -1.99 -5.72 16 19 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 20 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 21 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 22 N -0.88 -26.84 13.97 55.49 0.78 -26.07 16 23 Si 0.86 22.28 27.74 -169.99 -4.71 17.57 16 24 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.23 -6.15 6.74 56.52 0.38 -5.77 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.21 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.22 0.70 5.95 -52.48 -0.31 0.39 16 32 H 0.06 0.19 7.92 -51.93 -0.41 -0.22 16 33 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 34 H 0.08 0.35 4.62 -51.92 -0.24 0.11 16 35 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 36 H 0.09 1.47 7.37 -51.93 -0.38 1.09 16 37 H 0.09 1.36 7.42 -51.93 -0.39 0.97 16 38 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 41 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 42 H 0.10 1.77 7.40 -51.92 -0.38 1.39 16 43 H 0.10 1.79 8.11 -51.91 -0.42 1.37 16 44 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -39.46 383.19 -6.09 -45.56 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.21 Total: -1.91 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 1.07 Total: 2.56 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.27 Total: -41.78 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.25 Total: -22.03 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.46 -6.09 -45.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704875540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.486 kcal (2) G-P(sol) polarization free energy of solvation -39.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds