Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40372 * 126.64325 * 2 1 4 4 C 1.35138 * 107.11319 * 179.97438 * 3 2 1 5 5 O 1.33932 * 108.76449 * 359.75504 * 4 3 2 6 6 C 1.34915 * 109.38778 * 0.40293 * 5 4 3 7 7 C 1.46660 * 125.98682 * 179.85988 * 6 5 4 8 8 O 1.21695 * 119.99593 * 186.01643 * 7 6 5 9 9 N 1.34776 * 120.00060 * 6.02612 * 7 6 5 10 10 C 1.46496 * 119.99771 * 5.33724 * 9 7 6 11 11 C 1.46503 * 119.99789 * 185.34546 * 9 7 6 12 12 C 1.53000 * 109.46739 * 269.99467 * 11 9 7 13 13 N 1.46494 * 109.47163 * 180.02562 * 12 11 9 14 14 C 1.46504 * 120.00053 * 269.99840 * 13 12 11 15 15 C 1.34777 * 120.00305 * 89.99711 * 13 12 11 16 16 O 1.21286 * 119.99522 * 0.02562 * 15 13 12 17 17 C 1.50697 * 120.00353 * 180.02562 * 15 13 12 18 18 S 1.81000 * 109.47366 * 180.02562 * 17 15 13 19 19 C 1.76197 * 100.00152 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00134 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99814 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00004 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99563 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46876 * 120.00048 * 23 21 19 26 26 H 1.48496 * 109.47201 * 239.99850 * 23 21 19 27 27 H 1.09003 * 109.47188 * 270.02710 * 1 2 3 28 28 H 1.09000 * 109.47244 * 30.02836 * 1 2 3 29 29 H 1.09001 * 109.46684 * 150.02554 * 1 2 3 30 30 H 1.07990 * 126.44494 * 359.97438 * 3 2 1 31 31 H 1.07998 * 125.61420 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47331 * 275.30274 * 10 9 7 33 33 H 1.08990 * 109.47632 * 35.30981 * 10 9 7 34 34 H 1.09006 * 109.46887 * 155.30741 * 10 9 7 35 35 H 1.08995 * 109.46949 * 29.99419 * 11 9 7 36 36 H 1.08999 * 109.46853 * 149.99695 * 11 9 7 37 37 H 1.09001 * 109.47131 * 300.00100 * 12 11 9 38 38 H 1.09001 * 109.47095 * 59.99962 * 12 11 9 39 39 H 1.09006 * 109.46804 * 90.00111 * 14 13 12 40 40 H 1.08995 * 109.47133 * 209.99702 * 14 13 12 41 41 H 1.08997 * 109.47027 * 330.00026 * 14 13 12 42 42 H 1.09007 * 109.47096 * 299.99589 * 17 15 13 43 43 H 1.08999 * 109.47506 * 59.99803 * 17 15 13 44 44 H 0.97000 * 119.99550 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6184 0.6745 0.0006 5 8 3.6005 -0.6647 0.0064 6 6 2.3220 -1.0955 0.0006 7 6 1.8843 -2.4953 0.0013 8 8 0.7030 -2.7634 -0.1148 9 7 2.7904 -3.4846 0.1305 10 6 4.1960 -3.1615 0.3874 11 6 2.3696 -4.8831 0.0140 12 6 1.9735 -5.4130 1.3935 13 7 1.5533 -6.8116 1.2772 14 6 0.1478 -7.1352 1.0201 15 6 2.4597 -7.8006 1.4066 16 8 3.6233 -7.5327 1.6198 17 6 2.0276 -9.2393 1.2863 18 16 3.4622 -10.3207 1.5068 19 6 2.6905 -11.8940 1.3232 20 1 1.6291 -11.9561 1.1337 21 6 3.4470 -13.0536 1.4211 22 7 4.7408 -12.9780 1.6516 23 14 2.6287 -14.7216 1.2272 24 1 1.1769 -14.5347 0.9773 25 1 3.2391 -15.4422 0.0810 26 1 2.8198 -15.5140 2.4685 27 1 -0.3634 0.0005 1.0277 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 2.0306 2.1595 -0.0004 31 1 4.5046 1.2917 0.0011 32 1 4.7006 -2.9582 -0.5571 33 1 4.2555 -2.2816 1.0278 34 1 4.6780 -4.0045 0.8827 35 1 1.5158 -4.9505 -0.6601 36 1 3.1927 -5.4783 -0.3814 37 1 2.8274 -5.3454 2.0676 38 1 1.1505 -4.8177 1.7889 39 1 -0.0228 -7.1848 -0.0553 40 1 -0.0915 -8.0984 1.4707 41 1 -0.4879 -6.3632 1.4537 42 1 1.2849 -9.4609 2.0529 43 1 1.5936 -9.4072 0.3007 44 1 5.2694 -13.7884 1.7196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704893151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -44.586982 kcal Electronic energy + Delta-G solvation = -26599.290789 eV Core-core repulsion = 22645.481775 eV Total energy + Delta-G solvation = -3953.809013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.10235 -40.07293 -39.27169 -36.38503 -35.21199 -34.31046 -32.43343 -31.55099 -30.43175 -28.68622 -27.97648 -27.02653 -26.12603 -25.48874 -23.93385 -22.45868 -21.33121 -19.68149 -19.22367 -17.89730 -17.63084 -16.93409 -16.86697 -16.45867 -16.40385 -15.81530 -15.41671 -14.85124 -14.80603 -14.44034 -13.96488 -13.70317 -13.58774 -13.54367 -13.40324 -13.26773 -13.14706 -12.94865 -12.86960 -12.56604 -12.50258 -12.24459 -12.24002 -12.13788 -11.87292 -11.07709 -11.04314 -11.02100 -10.75300 -10.39383 -10.07859 -9.80183 -9.43205 -9.28594 -9.07815 -8.94996 -8.43239 -8.23142 -6.50777 -6.22410 -3.92818 0.70703 1.95524 2.26671 2.64783 2.86105 3.01915 3.07159 3.21315 3.27675 3.32081 3.63670 4.15479 4.19812 4.39992 4.46457 4.74572 4.93157 4.96446 5.04905 5.10364 5.12866 5.15595 5.16780 5.26809 5.32252 5.39411 5.40302 5.49221 5.53294 5.58565 5.65604 5.70778 5.76227 5.79760 5.87615 5.91944 6.03251 6.12901 6.14165 6.49529 6.63497 6.99958 7.50597 7.59745 7.72754 8.35054 8.51879 9.23231 10.85077 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032284 B = 0.001929 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.093596 B =14514.226876 C =15192.547124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.087 4.087 3 C -0.226 4.226 4 C -0.009 4.009 5 O -0.158 6.158 6 C -0.084 4.084 7 C 0.601 3.399 8 O -0.518 6.518 9 N -0.603 5.603 10 C 0.075 3.925 11 C 0.102 3.898 12 C 0.106 3.894 13 N -0.622 5.622 14 C 0.081 3.919 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.150 4.150 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.209 0.791 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 28.436 -3.522 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.245 4.245 4 C -0.078 4.078 5 O -0.053 6.053 6 C -0.135 4.135 7 C 0.389 3.611 8 O -0.396 6.396 9 N -0.335 5.335 10 C -0.067 4.067 11 C -0.021 4.021 12 C -0.019 4.019 13 N -0.358 5.358 14 C -0.063 4.063 15 C 0.321 3.679 16 O -0.390 6.390 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.173 0.827 31 H 0.226 0.774 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.932 28.338 -3.234 28.945 hybrid contribution -1.774 -1.033 -0.393 2.090 sum -6.706 27.305 -3.627 28.349 Atomic orbital electron populations 1.20457 0.88205 1.03804 1.02917 1.20663 0.97694 0.90997 0.99616 1.21754 0.92474 1.00147 1.10092 1.24437 0.99969 0.81119 1.02310 1.84279 1.28180 1.22261 1.70594 1.21786 0.81553 0.94668 1.15522 1.16661 0.85402 0.81906 0.77109 1.90837 1.15741 1.82134 1.50907 1.47689 1.09152 1.06190 1.70477 1.22007 0.80331 1.02480 1.01928 1.21981 1.01999 0.79526 0.98637 1.21687 1.01530 0.81578 0.97064 1.47799 1.09035 1.05378 1.73608 1.21812 0.81004 1.02197 1.01271 1.20397 0.85283 0.86888 0.75313 1.90684 1.17687 1.83907 1.46754 1.23560 1.06942 0.94695 1.04867 1.85368 1.06593 0.97699 1.93927 1.22903 0.97040 0.91488 1.56798 0.90860 1.24997 0.94834 0.99216 0.94575 1.70029 1.05317 1.29118 1.45825 0.86115 0.79304 0.82108 0.77961 1.19597 1.20575 1.20569 0.90831 0.91449 0.89257 0.82749 0.77401 0.91999 0.90436 0.89687 0.89498 0.89330 0.89709 0.90373 0.92612 0.90544 0.91197 0.89172 0.89158 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.89 36.01 0.36 -0.47 16 2 C -0.09 -0.82 6.20 -104.43 -0.65 -1.47 16 3 C -0.23 -1.57 10.83 -39.88 -0.43 -2.00 16 4 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 5 O -0.16 -1.37 7.54 4.99 0.04 -1.33 16 6 C -0.08 -0.89 6.70 -36.80 -0.25 -1.13 16 7 C 0.60 7.30 7.63 -12.86 -0.10 7.20 16 8 O -0.52 -7.27 14.35 5.19 0.07 -7.19 16 9 N -0.60 -6.76 2.87 -183.14 -0.53 -7.28 16 10 C 0.08 0.68 9.32 59.84 0.56 1.24 16 11 C 0.10 1.24 5.67 -4.04 -0.02 1.21 16 12 C 0.11 1.36 5.77 -4.04 -0.02 1.34 16 13 N -0.62 -8.93 2.87 -181.57 -0.52 -9.45 16 14 C 0.08 0.89 10.29 59.85 0.62 1.51 16 15 C 0.53 10.01 7.69 -10.99 -0.08 9.93 16 16 O -0.52 -11.41 15.44 5.55 0.09 -11.33 16 17 C -0.15 -3.04 4.71 36.00 0.17 -2.87 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 23 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.91 6.33 -51.93 -0.33 0.58 16 30 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 31 H 0.21 0.39 8.06 -52.49 -0.42 -0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.64 5.97 -51.93 -0.31 0.33 16 34 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 35 H 0.09 1.08 7.50 -51.93 -0.39 0.69 16 36 H 0.09 1.15 8.07 -51.93 -0.42 0.73 16 37 H 0.08 1.20 7.42 -51.93 -0.39 0.81 16 38 H 0.08 0.94 7.89 -51.93 -0.41 0.53 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 41 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 42 H 0.09 1.69 7.40 -51.91 -0.38 1.31 16 43 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -35.68 385.36 -7.13 -42.81 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.29 Total: -1.04 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 0.70 Total: 1.90 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.31 Total: -42.08 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.20 Total: -19.86 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.68 -7.13 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704893151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.772 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds