Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40372 * 126.64325 * 2 1 4 4 C 1.35138 * 107.11319 * 179.97438 * 3 2 1 5 5 O 1.33932 * 108.76449 * 359.75504 * 4 3 2 6 6 C 1.34915 * 109.38778 * 0.40293 * 5 4 3 7 7 C 1.46660 * 125.98682 * 179.85988 * 6 5 4 8 8 O 1.21695 * 119.99593 * 186.01643 * 7 6 5 9 9 N 1.34776 * 120.00060 * 6.02612 * 7 6 5 10 10 C 1.46496 * 119.99771 * 5.33724 * 9 7 6 11 11 C 1.46503 * 119.99789 * 185.34546 * 9 7 6 12 12 C 1.53000 * 109.46739 * 269.99467 * 11 9 7 13 13 N 1.46494 * 109.47163 * 180.02562 * 12 11 9 14 14 C 1.46504 * 120.00053 * 269.99840 * 13 12 11 15 15 C 1.34777 * 120.00305 * 89.99711 * 13 12 11 16 16 O 1.21286 * 119.99522 * 0.02562 * 15 13 12 17 17 C 1.50697 * 120.00353 * 180.02562 * 15 13 12 18 18 S 1.81000 * 109.47366 * 180.02562 * 17 15 13 19 19 C 1.76197 * 100.00152 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00134 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99814 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00004 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99563 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46876 * 120.00048 * 23 21 19 26 26 H 1.48496 * 109.47201 * 239.99850 * 23 21 19 27 27 H 1.09003 * 109.47188 * 270.02710 * 1 2 3 28 28 H 1.09000 * 109.47244 * 30.02836 * 1 2 3 29 29 H 1.09001 * 109.46684 * 150.02554 * 1 2 3 30 30 H 1.07990 * 126.44494 * 359.97438 * 3 2 1 31 31 H 1.07998 * 125.61420 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47331 * 275.30274 * 10 9 7 33 33 H 1.08990 * 109.47632 * 35.30981 * 10 9 7 34 34 H 1.09006 * 109.46887 * 155.30741 * 10 9 7 35 35 H 1.08995 * 109.46949 * 29.99419 * 11 9 7 36 36 H 1.08999 * 109.46853 * 149.99695 * 11 9 7 37 37 H 1.09001 * 109.47131 * 300.00100 * 12 11 9 38 38 H 1.09001 * 109.47095 * 59.99962 * 12 11 9 39 39 H 1.09006 * 109.46804 * 90.00111 * 14 13 12 40 40 H 1.08995 * 109.47133 * 209.99702 * 14 13 12 41 41 H 1.08997 * 109.47027 * 330.00026 * 14 13 12 42 42 H 1.09007 * 109.47096 * 299.99589 * 17 15 13 43 43 H 1.08999 * 109.47506 * 59.99803 * 17 15 13 44 44 H 0.97000 * 119.99550 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6184 0.6745 0.0006 5 8 3.6005 -0.6647 0.0064 6 6 2.3220 -1.0955 0.0006 7 6 1.8843 -2.4953 0.0013 8 8 0.7030 -2.7634 -0.1148 9 7 2.7904 -3.4846 0.1305 10 6 4.1960 -3.1615 0.3874 11 6 2.3696 -4.8831 0.0140 12 6 1.9735 -5.4130 1.3935 13 7 1.5533 -6.8116 1.2772 14 6 0.1478 -7.1352 1.0201 15 6 2.4597 -7.8006 1.4066 16 8 3.6233 -7.5327 1.6198 17 6 2.0276 -9.2393 1.2863 18 16 3.4622 -10.3207 1.5068 19 6 2.6905 -11.8940 1.3232 20 1 1.6291 -11.9561 1.1337 21 6 3.4470 -13.0536 1.4211 22 7 4.7408 -12.9780 1.6516 23 14 2.6287 -14.7216 1.2272 24 1 1.1769 -14.5347 0.9773 25 1 3.2391 -15.4422 0.0810 26 1 2.8198 -15.5140 2.4685 27 1 -0.3634 0.0005 1.0277 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 2.0306 2.1595 -0.0004 31 1 4.5046 1.2917 0.0011 32 1 4.7006 -2.9582 -0.5571 33 1 4.2555 -2.2816 1.0278 34 1 4.6780 -4.0045 0.8827 35 1 1.5158 -4.9505 -0.6601 36 1 3.1927 -5.4783 -0.3814 37 1 2.8274 -5.3454 2.0676 38 1 1.1505 -4.8177 1.7889 39 1 -0.0228 -7.1848 -0.0553 40 1 -0.0915 -8.0984 1.4707 41 1 -0.4879 -6.3632 1.4537 42 1 1.2849 -9.4609 2.0529 43 1 1.5936 -9.4072 0.3007 44 1 5.2694 -13.7884 1.7196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704893151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -67.553825 kcal Electronic energy + Delta-G solvation = -26600.286706 eV Core-core repulsion = 22645.481775 eV Total energy + Delta-G solvation = -3954.804930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.71123 -41.15678 -40.49038 -37.41457 -36.39328 -34.97807 -34.58379 -32.58089 -31.28890 -29.92972 -28.72683 -27.94848 -27.69180 -27.03820 -24.95642 -23.15525 -22.04009 -20.70069 -20.41398 -19.55743 -18.64316 -18.11958 -17.64693 -17.59940 -17.19008 -16.96357 -16.87661 -16.57446 -15.99759 -15.67730 -15.28263 -14.70036 -14.59124 -14.47789 -14.32974 -14.23043 -14.14884 -13.97648 -13.93139 -13.60055 -13.55792 -13.33218 -13.21605 -13.13309 -12.98260 -12.91207 -12.77917 -12.59979 -12.09414 -11.69919 -11.28824 -11.15728 -10.94004 -10.66728 -10.28072 -10.25077 -9.72165 -9.45448 -8.66713 -8.34879 -6.12616 0.00686 1.22477 1.39563 1.41376 1.41720 1.50506 1.55837 1.62579 1.93229 2.06232 2.25342 2.29314 2.99419 3.25430 3.46592 3.66832 3.81029 3.91352 3.94990 3.98096 4.15914 4.20014 4.27673 4.36555 4.48654 4.50679 4.53786 4.56007 4.64293 4.66621 4.72596 4.76145 4.83068 4.89947 4.91722 5.11673 5.18209 5.21887 5.42538 5.45164 5.52391 5.87260 6.15715 6.20041 6.22845 6.84692 7.06708 7.08564 8.74539 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032284 B = 0.001929 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.093596 B =14514.226876 C =15192.547124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.093 4.093 3 C -0.237 4.237 4 C 0.010 3.990 5 O -0.165 6.165 6 C -0.119 4.119 7 C 0.597 3.403 8 O -0.546 6.546 9 N -0.605 5.605 10 C 0.077 3.923 11 C 0.111 3.889 12 C 0.111 3.889 13 N -0.609 5.609 14 C 0.072 3.928 15 C 0.533 3.467 16 O -0.559 6.559 17 C -0.125 4.125 18 S -0.149 6.149 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.180 0.820 31 H 0.253 0.747 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 29.970 -3.938 31.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.255 4.255 4 C -0.059 4.059 5 O -0.061 6.061 6 C -0.170 4.170 7 C 0.387 3.613 8 O -0.427 6.427 9 N -0.336 5.336 10 C -0.064 4.064 11 C -0.013 4.013 12 C -0.013 4.013 13 N -0.343 5.343 14 C -0.070 4.070 15 C 0.321 3.679 16 O -0.436 6.436 17 C -0.276 4.276 18 S 0.078 5.922 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.198 0.802 31 H 0.269 0.731 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.457 29.907 -3.657 30.814 hybrid contribution -1.341 -1.276 -0.274 1.871 sum -7.798 28.631 -3.930 29.933 Atomic orbital electron populations 1.20450 0.88015 1.03734 1.03076 1.21024 0.98244 0.91764 0.98544 1.22086 0.92358 1.00669 1.10416 1.25377 1.01368 0.80178 0.98969 1.84258 1.27274 1.23731 1.70818 1.21524 0.82644 0.94066 1.18755 1.16912 0.85123 0.82728 0.76523 1.90804 1.16732 1.82804 1.52347 1.47740 1.09916 1.05618 1.70345 1.22067 0.79216 1.02613 1.02551 1.21764 1.01463 0.80182 0.97879 1.21721 1.01501 0.80674 0.97376 1.47763 1.09776 1.05089 1.71678 1.22107 0.78978 1.03320 1.02587 1.20162 0.85246 0.87050 0.75471 1.90670 1.19515 1.84329 1.49129 1.23385 1.03695 0.94087 1.06397 1.85529 1.12172 1.00113 1.94376 1.23233 0.97480 0.91833 1.56750 0.89924 1.26121 0.95411 1.03755 0.93874 1.70187 1.07138 1.30443 1.46953 0.84910 0.78748 0.76250 0.78073 1.18030 1.19947 1.19942 0.90515 0.89388 0.91384 0.80248 0.73104 0.91114 0.89467 0.90220 0.89607 0.90476 0.91115 0.88973 0.91141 0.90063 0.88869 0.87363 0.87381 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.89 71.24 0.70 -0.85 16 2 C -0.09 -1.65 6.20 -19.74 -0.12 -1.77 16 3 C -0.24 -2.66 10.83 22.07 0.24 -2.42 16 4 C 0.01 0.09 12.08 67.11 0.81 0.90 16 5 O -0.16 -2.60 7.54 -5.06 -0.04 -2.64 16 6 C -0.12 -2.45 6.70 24.07 0.16 -2.28 16 7 C 0.60 14.58 7.63 86.44 0.66 15.24 16 8 O -0.55 -15.55 14.35 -4.33 -0.06 -15.61 16 9 N -0.60 -13.65 2.87 -851.54 -2.45 -16.10 16 10 C 0.08 1.40 9.32 127.77 1.19 2.59 16 11 C 0.11 2.71 5.67 86.38 0.49 3.20 16 12 C 0.11 2.84 5.77 86.38 0.50 3.34 16 13 N -0.61 -16.95 2.87 -846.76 -2.43 -19.39 16 14 C 0.07 1.43 10.29 127.77 1.31 2.75 16 15 C 0.53 20.07 7.69 87.66 0.67 20.74 16 16 O -0.56 -25.50 15.44 -3.05 -0.05 -25.55 16 17 C -0.12 -4.99 4.71 71.23 0.34 -4.66 16 18 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 19 C -0.55 -31.11 9.50 67.95 0.65 -30.46 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.75 5.49 84.86 0.47 1.21 16 22 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 23 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.41 6.33 -2.39 -0.02 1.39 16 30 H 0.18 1.00 8.06 -2.92 -0.02 0.98 16 31 H 0.25 -0.23 8.06 -2.91 -0.02 -0.26 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.40 5.97 -2.39 -0.01 1.39 16 34 H 0.08 1.52 8.03 -2.38 -0.02 1.50 16 35 H 0.09 2.12 7.50 -2.39 -0.02 2.10 16 36 H 0.08 2.06 8.07 -2.39 -0.02 2.04 16 37 H 0.07 2.04 7.42 -2.39 -0.02 2.02 16 38 H 0.09 2.13 7.89 -2.39 -0.02 2.11 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.08 1.57 6.44 -2.39 -0.02 1.56 16 41 H 0.09 1.48 7.89 -2.39 -0.02 1.46 16 42 H 0.11 3.94 7.40 -2.39 -0.02 3.92 16 43 H 0.11 3.93 8.11 -2.40 -0.02 3.91 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.34 385.36 5.20 -75.14 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.01 Total: 15.97 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 8.07 Total: 7.54 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -4.59 Total: -91.05 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.15 Total: -43.79 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -80.34 5.20 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704893151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.582 kcal (2) G-P(sol) polarization free energy of solvation -80.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds