Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47209 * 2 1 4 4 C 1.40357 * 126.64730 * 264.99914 * 3 2 1 5 5 C 1.35139 * 107.11426 * 179.97438 * 4 3 2 6 6 O 1.33930 * 108.76462 * 0.02562 * 5 4 3 7 7 C 1.34906 * 109.38535 * 359.97438 * 6 5 4 8 8 C 1.46665 * 125.98520 * 180.26564 * 7 6 5 9 9 O 1.21696 * 119.99888 * 179.69345 * 8 7 6 10 10 N 1.34779 * 119.99984 * 359.69141 * 8 7 6 11 11 C 1.46493 * 119.99945 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47135 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47064 * 294.99394 * 12 11 10 14 14 C 1.53000 * 109.47124 * 174.99945 * 12 11 10 15 15 N 1.46498 * 109.47316 * 54.99803 * 12 11 10 16 16 C 1.34776 * 119.99898 * 205.00131 * 15 12 11 17 17 O 1.21285 * 119.99910 * 0.02562 * 16 15 12 18 18 C 1.50697 * 119.99968 * 179.97438 * 16 15 12 19 19 S 1.81004 * 109.47298 * 180.02562 * 18 16 15 20 20 C 1.76202 * 100.00091 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99707 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99893 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00271 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99929 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46872 * 59.99609 * 24 22 20 26 26 H 1.48504 * 109.46923 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46713 * 299.99573 * 24 22 20 28 28 H 1.08998 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47106 * 299.99686 * 1 2 3 30 30 H 1.08998 * 109.47540 * 59.99565 * 1 2 3 31 31 H 1.09004 * 109.47106 * 240.00314 * 2 1 3 32 32 H 1.08998 * 109.47540 * 120.00435 * 2 1 3 33 33 H 1.08004 * 126.44797 * 0.02623 * 4 3 2 34 34 H 1.08004 * 125.61690 * 180.02562 * 5 4 3 35 35 H 0.96998 * 119.99898 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47081 * 299.99909 * 11 10 8 37 37 H 1.09001 * 109.47407 * 59.99638 * 11 10 8 38 38 H 1.09008 * 109.46981 * 179.97438 * 14 12 11 39 39 H 1.08995 * 109.47542 * 299.99845 * 14 12 11 40 40 H 1.09008 * 109.47262 * 59.99869 * 14 12 11 41 41 H 0.96993 * 119.99929 * 25.00243 * 15 12 11 42 42 H 1.09001 * 109.47110 * 299.99953 * 18 16 15 43 43 H 1.08998 * 109.47053 * 59.99710 * 18 16 15 44 44 H 0.96998 * 120.00143 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4041 2.1779 -1.1218 5 6 2.7910 3.3920 -0.6718 6 8 2.6752 3.4139 0.6623 7 6 2.2137 2.2211 1.0914 8 6 1.9478 1.8507 2.4854 9 8 1.5255 0.7405 2.7500 10 7 2.1712 2.7399 3.4733 11 6 1.9062 2.3698 4.8657 12 6 2.2401 3.5504 5.7796 13 1 3.3100 3.7539 5.7341 14 6 1.8468 3.2089 7.2182 15 7 1.4986 4.7344 5.3386 16 6 1.9659 5.9664 5.6219 17 8 3.0005 6.0949 6.2416 18 6 1.2034 7.1844 5.1678 19 16 2.0802 8.6770 5.6965 20 6 1.0004 9.9109 5.0513 21 1 0.1086 9.6213 4.5154 22 6 1.2966 11.2549 5.2309 23 7 2.3838 11.6078 5.8835 24 14 0.1514 12.5631 4.5475 25 1 -1.1951 12.4081 5.1542 26 1 0.6882 13.9092 4.8718 27 1 0.0507 12.4117 3.0736 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3840 1.8520 -2.1513 34 1 3.1367 4.2099 -1.2866 35 1 2.5083 3.6247 3.2623 36 1 0.8536 2.1098 4.9784 37 1 2.5231 1.5133 5.1378 38 1 2.0851 4.0500 7.8695 39 1 0.7770 3.0054 7.2639 40 1 2.3985 2.3280 7.5464 41 1 0.6713 4.6317 4.8427 42 1 1.1215 7.1773 4.0809 43 1 0.2061 7.1735 5.6074 44 1 2.5905 12.5471 6.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705122087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -72.726327 kcal Electronic energy + Delta-G solvation = -26520.430362 eV Core-core repulsion = 22565.401135 eV Total energy + Delta-G solvation = -3955.029227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.01682 -40.02922 -39.19437 -36.52683 -35.28183 -33.83532 -32.45653 -31.75745 -31.48770 -29.86657 -28.62000 -26.72738 -25.51022 -24.27105 -22.93469 -21.91723 -21.34684 -20.41310 -20.04587 -18.48869 -17.84731 -16.79143 -16.63143 -16.52711 -16.38420 -15.78059 -15.06213 -14.94742 -14.82673 -14.77837 -14.34016 -14.15009 -13.95704 -13.44200 -13.33581 -13.17049 -12.99814 -12.89419 -12.80061 -12.65378 -12.58268 -12.09233 -11.88192 -11.61764 -11.26763 -11.19372 -11.07272 -11.06011 -10.79120 -10.42296 -10.04818 -9.85510 -9.57001 -9.43056 -9.10324 -9.03790 -8.88365 -8.27838 -6.53304 -6.24240 -3.95166 0.75869 2.03189 2.39104 2.85376 2.87709 2.98127 3.04131 3.21451 3.25479 3.28537 3.65030 4.17881 4.33215 4.37472 4.40582 4.55152 4.86716 5.01327 5.05358 5.09277 5.10767 5.11802 5.16515 5.28394 5.31040 5.38827 5.43559 5.51485 5.62057 5.64226 5.71346 5.83775 5.89238 5.89655 5.96832 6.00168 6.08567 6.10141 6.15950 6.52689 6.54044 7.14357 7.56500 7.60309 7.76809 8.32321 8.52432 9.21074 10.83082 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.002504 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.650361 B =11180.286823 C =12847.105623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.082 4.082 4 C -0.227 4.227 5 C 0.003 3.997 6 O -0.161 6.161 7 C -0.088 4.088 8 C 0.604 3.396 9 O -0.518 6.518 10 N -0.719 5.719 11 C 0.113 3.887 12 C 0.131 3.869 13 H 0.096 0.904 14 C -0.161 4.161 15 N -0.738 5.738 16 C 0.534 3.466 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.156 0.844 34 H 0.211 0.789 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -22.863 -11.427 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.085 4.085 4 C -0.246 4.246 5 C -0.067 4.067 6 O -0.056 6.056 7 C -0.140 4.140 8 C 0.391 3.609 9 O -0.396 6.396 10 N -0.371 5.371 11 C -0.011 4.011 12 C 0.026 3.974 13 H 0.114 0.886 14 C -0.220 4.220 15 N -0.393 5.393 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.173 0.827 34 H 0.228 0.772 35 H 0.246 0.754 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.574 -23.049 -9.871 25.080 hybrid contribution -2.141 1.178 -1.795 3.032 sum -2.716 -21.871 -11.665 24.935 Atomic orbital electron populations 1.21634 0.94311 1.01821 1.01938 1.20134 0.96383 0.90113 1.03353 1.20639 0.99126 0.97647 0.91052 1.21750 1.08073 0.94533 1.00245 1.24442 1.01595 1.00002 0.80686 1.84101 1.64863 1.33421 1.23188 1.21805 1.11659 0.85675 0.94869 1.16505 0.77987 0.84557 0.81828 1.90857 1.46061 1.20484 1.82237 1.45911 1.67034 1.17561 1.06588 1.21786 1.02507 0.97411 0.79363 1.21146 0.98541 0.84007 0.93714 0.88590 1.22114 1.01830 1.02623 0.95402 1.46155 1.27961 1.05178 1.60044 1.20335 0.85338 0.83668 0.78653 1.90711 1.23439 1.85992 1.38602 1.23541 1.03688 0.98794 1.04480 1.85388 1.32469 0.91672 1.73680 1.22821 1.11135 0.92665 1.41847 0.90995 1.24986 0.95729 0.97876 0.94948 1.70000 1.24012 1.17748 1.38517 0.86231 0.80298 0.79689 0.79326 1.19937 1.20795 1.19932 0.92252 0.92265 0.93042 0.91100 0.89300 0.82666 0.77200 0.75395 0.90387 0.89583 0.90970 0.92141 0.91453 0.76721 0.89242 0.89204 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.89 37.15 0.37 -0.82 16 2 C -0.06 -0.56 5.72 -27.89 -0.16 -0.72 16 3 C -0.08 -0.82 5.45 -104.44 -0.57 -1.39 16 4 C -0.23 -1.83 10.83 -39.89 -0.43 -2.26 16 5 C 0.00 0.02 12.08 29.63 0.36 0.38 16 6 O -0.16 -1.68 10.40 5.02 0.05 -1.63 16 7 C -0.09 -0.98 7.13 -36.79 -0.26 -1.24 16 8 C 0.60 6.96 7.79 -12.86 -0.10 6.86 16 9 O -0.52 -6.83 14.61 5.19 0.08 -6.75 16 10 N -0.72 -7.15 5.38 -61.63 -0.33 -7.48 16 11 C 0.11 1.00 5.23 -4.05 -0.02 0.98 16 12 C 0.13 1.36 2.73 -67.93 -0.19 1.17 16 13 H 0.10 1.15 7.58 -51.93 -0.39 0.76 16 14 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 15 N -0.74 -8.83 4.52 -53.81 -0.24 -9.08 16 16 C 0.53 9.23 7.81 -10.99 -0.09 9.14 16 17 O -0.51 -10.90 15.52 5.55 0.09 -10.81 16 18 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 20 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 24 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.91 6.74 -51.93 -0.35 0.56 16 33 H 0.16 0.88 8.06 -52.48 -0.42 0.45 16 34 H 0.21 0.86 8.06 -52.48 -0.42 0.43 16 35 H 0.41 4.12 7.90 -40.82 -0.32 3.80 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 41 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 42 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -35.00 392.76 -7.71 -42.71 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.44 Total: 4.52 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.32 Total: -4.63 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.16 Total: -41.69 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.21 Total: -19.19 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.00 -7.71 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705122087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.020 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds