Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35130 * 126.43773 * 2 1 4 4 O 1.33933 * 108.76339 * 179.97438 * 3 2 1 5 5 C 1.34914 * 109.38511 * 359.97438 * 4 3 2 6 6 C 1.46654 * 125.98648 * 179.97438 * 5 4 3 7 7 O 1.21699 * 120.00132 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00237 * 0.02874 * 6 5 4 9 9 C 1.46504 * 120.00244 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.46835 * 35.00465 * 9 8 6 11 11 C 1.52992 * 109.47059 * 274.99795 * 9 8 6 12 12 C 1.52999 * 109.46868 * 154.99906 * 9 8 6 13 13 C 1.53005 * 109.47449 * 294.99803 * 12 9 8 14 14 N 1.46495 * 109.47215 * 180.02562 * 13 12 9 15 15 C 1.34783 * 119.99391 * 180.02562 * 14 13 12 16 16 O 1.21273 * 120.00660 * 0.02562 * 15 14 13 17 17 C 1.50708 * 119.99411 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.46851 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99950 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99446 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00080 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99786 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47253 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47432 * 120.00382 * 23 21 19 26 26 H 1.48505 * 109.47229 * 240.00727 * 23 21 19 27 27 C 1.36546 * 108.02527 * 359.97438 * 5 4 3 28 28 H 1.09000 * 109.47272 * 270.05902 * 1 2 3 29 29 H 1.08996 * 109.47235 * 30.05598 * 1 2 3 30 30 H 1.09000 * 109.47420 * 150.05740 * 1 2 3 31 31 H 1.07993 * 125.62286 * 359.97303 * 3 2 1 32 32 H 0.97008 * 120.00073 * 359.97438 * 8 6 5 33 33 H 1.09007 * 109.47353 * 60.00181 * 11 9 8 34 34 H 1.09007 * 109.46853 * 179.97438 * 11 9 8 35 35 H 1.08992 * 109.47421 * 299.99910 * 11 9 8 36 36 H 1.08993 * 109.47594 * 55.00349 * 12 9 8 37 37 H 1.09005 * 109.46941 * 175.00570 * 12 9 8 38 38 H 1.09001 * 109.46903 * 300.00778 * 13 12 9 39 39 H 1.09000 * 109.46423 * 59.99991 * 13 12 9 40 40 H 0.96993 * 120.00086 * 0.02562 * 14 13 12 41 41 H 1.08996 * 109.46856 * 300.00250 * 17 15 14 42 42 H 1.08998 * 109.46651 * 60.00220 * 17 15 14 43 43 H 0.96995 * 119.99718 * 179.97438 * 22 21 19 44 44 H 1.07991 * 126.64289 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5857 0.6805 0.0006 5 6 3.6260 -0.6680 0.0015 6 6 4.8378 -1.4940 0.0018 7 8 4.7471 -2.7076 0.0022 8 7 6.0521 -0.9090 0.0017 9 6 7.2627 -1.7341 0.0026 10 1 7.0890 -2.6347 -0.5863 11 6 7.6129 -2.1242 1.4399 12 6 8.4205 -0.9414 -0.6073 13 6 8.1244 -0.6588 -2.0816 14 7 9.2333 0.0997 -2.6657 15 6 9.1911 0.4641 -3.9626 16 8 8.2350 0.1645 -4.6460 17 6 10.3316 1.2449 -4.5634 18 16 9.9813 1.5790 -6.3074 19 6 11.4333 2.4765 -6.7446 20 1 12.1981 2.6597 -6.0044 21 6 11.5946 2.9469 -8.0404 22 7 10.6625 2.7230 -8.9426 23 14 13.1341 3.8976 -8.5041 24 1 14.0208 4.0126 -7.3184 25 1 13.8504 3.1810 -9.5896 26 1 12.7554 5.2549 -8.9728 27 6 2.3407 -1.1291 0.0021 28 1 -0.3634 0.0011 1.0277 29 1 -0.3633 0.8894 -0.5147 30 1 -0.3634 -0.8905 -0.5129 31 1 1.9770 2.1146 -0.0004 32 1 6.1244 0.0583 0.0011 33 1 6.7880 -2.6889 1.8745 34 1 8.5135 -2.7384 1.4405 35 1 7.7867 -1.2236 2.0287 36 1 8.5368 0.0013 -0.0729 37 1 9.3401 -1.5209 -0.5261 38 1 8.0081 -1.6016 -2.6160 39 1 7.2047 -0.0793 -2.1628 40 1 9.9978 0.3397 -2.1191 41 1 10.4480 2.1875 -4.0286 42 1 11.2511 0.6652 -4.4824 43 1 10.7751 3.0521 -9.8481 44 1 2.0267 -2.1624 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721004008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -102.430744 kcal Electronic energy + Delta-G solvation = -25711.676038 eV Core-core repulsion = 21755.358731 eV Total energy + Delta-G solvation = -3956.317307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 4.84 seconds Orbital eigenvalues (eV) -43.72421 -40.94452 -40.49167 -37.78887 -35.70605 -35.16701 -34.58444 -33.06900 -31.67029 -31.02804 -29.22765 -28.17286 -27.65623 -25.23021 -24.06886 -22.20100 -22.16779 -21.57894 -21.09338 -19.84597 -18.97791 -17.81925 -17.66947 -17.45106 -17.25788 -17.08740 -16.88050 -16.64318 -15.93314 -15.66130 -15.45040 -15.13913 -14.80411 -14.54405 -14.47174 -14.36148 -14.11089 -13.97670 -13.65581 -13.56771 -13.54118 -13.16033 -13.04343 -12.91676 -12.64566 -12.58980 -12.46631 -12.42035 -11.97171 -11.70433 -11.46446 -11.16002 -10.98224 -10.76895 -10.34676 -10.26662 -10.12262 -9.57754 -8.67238 -8.34854 -6.13129 -0.02410 1.27267 1.30486 1.41748 1.47616 1.58531 1.60594 1.62760 2.04017 2.16635 2.24815 2.28813 2.99437 3.31746 3.59743 3.73212 3.79032 3.79470 4.01483 4.02598 4.07196 4.30515 4.32115 4.40570 4.43741 4.51610 4.59792 4.62049 4.77135 4.85547 4.86219 4.90351 4.98574 5.00899 5.06044 5.09345 5.29394 5.37641 5.41649 5.42467 5.47919 5.79889 6.20140 6.35338 6.51930 6.94212 7.06537 7.25523 8.74664 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.001907 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.350334 B =14679.982176 C =16076.093719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.208 4.208 3 C 0.003 3.997 4 O -0.167 6.167 5 C -0.106 4.106 6 C 0.602 3.398 7 O -0.558 6.558 8 N -0.705 5.705 9 C 0.143 3.857 10 H 0.075 0.925 11 C -0.155 4.155 12 C -0.122 4.122 13 C 0.119 3.881 14 N -0.709 5.709 15 C 0.530 3.470 16 O -0.570 6.570 17 C -0.128 4.128 18 S -0.157 6.157 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.274 1.274 27 C -0.127 4.127 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.249 0.751 32 H 0.414 0.586 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.420 0.580 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.683 -3.724 27.816 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.066 4.066 4 O -0.063 6.063 5 C -0.158 4.158 6 C 0.389 3.611 7 O -0.439 6.439 8 N -0.356 5.356 9 C 0.039 3.961 10 H 0.093 0.907 11 C -0.213 4.213 12 C -0.160 4.160 13 C -0.005 4.005 14 N -0.364 5.364 15 C 0.316 3.684 16 O -0.448 6.448 17 C -0.279 4.279 18 S 0.070 5.930 19 C -0.692 4.692 20 H 0.103 0.897 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.148 4.148 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.265 0.735 32 H 0.251 0.749 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.258 0.742 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.067 -4.902 26.546 29.992 hybrid contribution 1.692 1.048 0.119 1.994 sum -11.375 -3.854 26.666 29.246 Atomic orbital electron populations 1.20260 0.86654 1.03780 1.03230 1.20863 0.99204 0.91798 1.09051 1.25091 0.78842 1.01693 1.00974 1.84047 1.30669 1.20838 1.70723 1.21929 0.96091 0.81357 1.16393 1.16693 0.82176 0.86057 0.76146 1.90855 1.86637 1.13744 1.52668 1.46017 1.04841 1.11372 1.73359 1.21055 0.82786 0.94054 0.98251 0.90672 1.22108 1.02302 1.02633 0.94296 1.22056 0.98946 1.03047 0.91915 1.21373 0.89300 0.95291 0.94581 1.45676 1.23971 1.57104 1.09636 1.20142 0.86870 0.78828 0.82531 1.90703 1.36129 1.56105 1.61872 1.23368 1.00447 1.03613 1.00500 1.85645 1.30443 1.72315 1.04628 1.23242 1.05821 1.40494 0.99624 0.89728 1.26162 1.01118 0.96902 0.95179 1.70199 1.35453 1.45117 1.04114 0.84881 0.76887 0.77421 0.78599 1.17862 1.20038 1.19956 1.22098 0.91049 1.01322 1.00305 0.90202 0.89693 0.91412 0.73467 0.74883 0.93817 0.89378 0.90662 0.87790 0.86755 0.93351 0.92974 0.74240 0.86915 0.87033 0.92028 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.39 71.24 0.74 -0.01 16 2 C -0.21 -3.12 6.14 -20.06 -0.12 -3.24 16 3 C 0.00 0.04 12.00 67.10 0.81 0.85 16 4 O -0.17 -3.03 10.40 -5.07 -0.05 -3.08 16 5 C -0.11 -2.30 7.13 24.07 0.17 -2.13 16 6 C 0.60 14.17 7.75 86.44 0.67 14.84 16 7 O -0.56 -16.65 16.53 -4.35 -0.07 -16.73 16 8 N -0.70 -12.06 4.53 -446.53 -2.02 -14.08 16 9 C 0.14 2.08 2.57 44.99 0.12 2.19 16 10 H 0.08 1.46 7.58 -2.39 -0.02 1.44 16 11 C -0.16 -1.76 9.48 71.98 0.68 -1.08 16 12 C -0.12 -1.31 4.87 30.60 0.15 -1.16 16 13 C 0.12 2.48 5.56 86.38 0.48 2.96 16 14 N -0.71 -16.39 5.56 -463.05 -2.57 -18.97 16 15 C 0.53 19.27 7.85 87.66 0.69 19.96 16 16 O -0.57 -26.86 15.86 -3.01 -0.05 -26.91 16 17 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 18 S -0.16 -8.75 20.57 -56.49 -1.16 -9.92 16 19 C -0.54 -30.90 9.50 67.95 0.65 -30.25 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.62 5.49 84.86 0.47 1.09 16 22 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 23 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 C -0.13 -2.57 10.57 22.39 0.24 -2.33 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.25 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.41 5.62 8.36 -92.70 -0.77 4.85 16 33 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.27 7.75 -2.39 -0.02 1.25 16 40 H 0.42 6.17 8.47 -92.71 -0.79 5.39 16 41 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 42 H 0.11 3.83 8.14 -2.40 -0.02 3.82 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.16 3.09 8.06 -2.92 -0.02 3.07 16 Total: -1.00 -86.46 396.95 2.02 -84.44 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.53 Total: 18.58 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 6.17 Total: -2.84 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -4.31 Total: -88.95 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.17 Total: -46.71 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.92 kcal Total: -86.46 2.02 -84.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721004008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.994 kcal (2) G-P(sol) polarization free energy of solvation -86.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.84 seconds