Wall clock time and date at job start Sat Apr 11 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46505 * 54.99758 * 3 2 1 5 5 C 1.52997 * 109.47127 * 174.99886 * 3 2 1 6 6 N 1.46500 * 109.47249 * 295.00397 * 3 2 1 7 7 C 1.34768 * 120.00056 * 154.99998 * 6 3 2 8 8 O 1.21554 * 120.00177 * 359.97438 * 7 6 3 9 9 C 1.47851 * 120.00017 * 179.97438 * 7 6 3 10 10 C 1.39573 * 120.14129 * 359.72471 * 9 7 6 11 11 C 1.37960 * 119.84915 * 179.74672 * 10 9 7 12 12 C 1.38359 * 120.14769 * 0.52756 * 11 10 9 13 13 S 1.76200 * 119.85734 * 179.76583 * 12 11 10 14 14 O 1.42097 * 106.40067 * 23.52187 * 13 12 11 15 15 O 1.42099 * 106.40192 * 156.43984 * 13 12 11 16 16 N 1.65596 * 107.21731 * 269.97811 * 13 12 11 17 17 C 1.46507 * 119.99999 * 65.00133 * 16 13 12 18 18 C 1.50696 * 109.46975 * 165.00010 * 17 16 13 19 19 H 1.07998 * 120.00284 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99632 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00286 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00086 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46968 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47163 * 119.99621 * 22 20 18 25 25 H 1.48500 * 109.47265 * 240.00308 * 22 20 18 26 26 C 1.38361 * 120.28931 * 359.74407 * 12 11 10 27 27 C 1.37954 * 120.14653 * 359.97438 * 26 12 11 28 28 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47518 * 299.99758 * 1 2 3 30 30 H 1.09001 * 109.47018 * 59.99856 * 1 2 3 31 31 H 1.08995 * 109.47070 * 240.00530 * 2 1 3 32 32 H 1.09001 * 109.47018 * 120.00144 * 2 1 3 33 33 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 35 35 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 36 36 H 0.97001 * 119.99547 * 334.99826 * 6 3 2 37 37 H 1.07992 * 120.07609 * 0.02562 * 10 9 7 38 38 H 1.08003 * 119.92911 * 180.27626 * 11 10 9 39 39 H 0.97000 * 120.00266 * 244.99338 * 16 13 12 40 40 H 1.08995 * 109.46483 * 284.99815 * 17 16 13 41 41 H 1.08996 * 109.46844 * 44.99468 * 17 16 13 42 42 H 0.96995 * 120.00510 * 180.02562 * 21 20 18 43 43 H 1.08007 * 119.92768 * 179.97438 * 26 12 11 44 44 H 1.08006 * 120.07612 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0976 -1.2518 7 6 1.5255 3.4384 -1.2995 8 8 1.7323 4.1043 -0.3038 9 6 1.1349 4.0996 -2.5629 10 6 0.9023 3.3384 -3.7095 11 6 0.5330 3.9610 -4.8838 12 6 0.4036 5.3378 -4.9295 13 16 -0.0626 6.1256 -6.4350 14 8 -0.7478 5.1471 -7.2045 15 8 -0.6386 7.3733 -6.0734 16 7 1.3316 6.4751 -7.2574 17 6 2.1865 5.3896 -7.7445 18 6 3.1654 5.9348 -8.7522 19 1 3.1518 6.9847 -9.0050 20 6 4.0776 5.0930 -9.3523 21 7 4.0939 3.8144 -9.0450 22 14 5.2906 5.7685 -10.6021 23 1 5.0669 7.2269 -10.7708 24 1 6.6767 5.5319 -10.1245 25 1 5.0921 5.0838 -11.9048 26 6 0.6382 6.0986 -3.7979 27 6 1.0025 5.4880 -2.6157 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9281 2.4721 0.1262 34 1 3.9994 0.9054 -0.7161 35 1 3.8532 0.9570 1.0571 36 1 1.4870 1.5662 -2.0462 37 1 1.0068 2.2640 -3.6762 38 1 0.3483 3.3729 -5.7706 39 1 1.5822 7.3986 -7.4168 40 1 2.7317 4.9533 -6.9076 41 1 1.5693 4.6242 -8.2147 42 1 4.7358 3.2222 -9.4668 43 1 0.5359 7.1730 -3.8402 44 1 1.1857 6.0831 -1.7332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025374675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:05 Heat of formation + Delta-G solvation = -100.858969 kcal Electronic energy + Delta-G solvation = -27022.562345 eV Core-core repulsion = 23066.313195 eV Total energy + Delta-G solvation = -3956.249150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51742 -38.62340 -36.81143 -36.69356 -35.42551 -34.69705 -33.05113 -32.21309 -31.40116 -31.09343 -29.89016 -26.80372 -24.97040 -23.89551 -22.91868 -22.51566 -21.39301 -20.79540 -19.16826 -18.33825 -17.59853 -17.16302 -16.73261 -15.98051 -15.66223 -15.37885 -15.14610 -14.94638 -14.50999 -14.40882 -14.19549 -14.05391 -13.80170 -13.65788 -13.49474 -13.04983 -12.97210 -12.61721 -12.52680 -12.18665 -12.13498 -11.87563 -11.71279 -11.69037 -11.60494 -11.48211 -11.32360 -11.06537 -11.01274 -10.81479 -10.71709 -10.19126 -10.13630 -9.54498 -9.48223 -9.31326 -9.13075 -8.96867 -8.30397 -6.23630 -4.27954 0.30338 0.90511 1.23518 2.52609 2.82947 3.21314 3.29239 3.32596 3.48312 3.70781 4.17245 4.26559 4.30396 4.47211 4.49322 4.62760 4.67924 4.76626 4.89296 5.06671 5.13933 5.18324 5.19527 5.25102 5.38367 5.41411 5.48143 5.54227 5.56434 5.71538 5.83647 5.85332 5.93768 5.96123 6.04250 6.07844 6.21118 6.35693 6.67212 7.19193 7.20770 7.26406 7.72196 7.74631 7.92434 8.11038 8.76315 9.37418 10.86801 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.002979 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.553953 B = 9397.527434 C =10858.970038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.140 3.860 4 H 0.090 0.910 5 C -0.166 4.166 6 N -0.720 5.720 7 C 0.560 3.440 8 O -0.533 6.533 9 C -0.091 4.091 10 C -0.109 4.109 11 C -0.019 4.019 12 C -0.646 4.646 13 S 2.689 3.311 14 O -0.958 6.958 15 O -0.976 6.976 16 N -1.101 6.101 17 C 0.245 3.755 18 C -0.529 4.529 19 H 0.067 0.933 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.903 3.097 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.027 4.027 27 C -0.085 4.085 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.402 0.598 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.412 0.588 40 H 0.022 0.978 41 H 0.040 0.960 42 H 0.265 0.735 43 H 0.147 0.853 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -6.673 16.674 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.036 3.964 4 H 0.108 0.892 5 C -0.224 4.224 6 N -0.372 5.372 7 C 0.347 3.653 8 O -0.410 6.410 9 C -0.095 4.095 10 C -0.128 4.128 11 C -0.038 4.038 12 C -0.730 4.730 13 S 2.776 3.224 14 O -0.948 6.948 15 O -0.966 6.966 16 N -0.864 5.864 17 C 0.122 3.878 18 C -0.569 4.569 19 H 0.085 0.915 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.046 4.046 27 C -0.105 4.105 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.238 0.762 37 H 0.150 0.850 38 H 0.168 0.832 39 H 0.247 0.753 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.164 0.836 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.558 -6.437 17.163 19.155 hybrid contribution 1.388 -0.051 -0.615 1.519 sum -4.170 -6.488 16.548 18.257 Atomic orbital electron populations 1.21791 0.95207 1.01858 1.02351 1.21854 0.96660 0.95209 1.03294 1.21056 0.95169 0.93099 0.87090 0.89235 1.22200 0.95115 1.02939 1.02167 1.46034 1.70421 1.06767 1.14024 1.18299 0.76820 0.82153 0.87978 1.90768 1.50084 1.64181 1.35994 1.20181 1.01041 0.94871 0.93363 1.21352 0.99318 0.99803 0.92337 1.20976 0.91530 0.92745 0.98587 1.31525 1.14891 1.05213 1.21421 1.01992 0.73677 0.73303 0.73451 1.93574 1.71388 1.62293 1.67581 1.93538 1.76273 1.42437 1.84369 1.55446 1.43753 1.17048 1.70113 1.19120 0.89406 0.84451 0.94860 1.21224 1.16369 0.95665 1.23621 0.91488 1.24965 0.97457 0.94793 0.96954 1.69931 1.36473 1.03486 1.42951 0.86358 0.80523 0.79217 0.80833 1.19564 1.20855 1.20762 1.20931 0.92321 1.00387 0.90959 1.21330 0.97237 0.93266 0.98640 0.92394 0.92556 0.92472 0.91159 0.90219 0.91871 0.92197 0.91535 0.76247 0.84950 0.83216 0.75325 0.96002 0.94242 0.92499 0.83562 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.80 37.16 0.36 -0.59 16 2 C -0.13 -0.77 5.47 -26.73 -0.15 -0.92 16 3 C 0.14 1.15 2.57 -67.93 -0.17 0.98 16 4 H 0.09 0.87 7.58 -51.93 -0.39 0.47 16 5 C -0.17 -1.36 9.48 37.16 0.35 -1.01 16 6 N -0.72 -6.74 4.48 -54.75 -0.25 -6.98 16 7 C 0.56 7.10 7.74 -12.33 -0.10 7.01 16 8 O -0.53 -8.27 16.01 5.32 0.09 -8.18 16 9 C -0.09 -1.19 5.87 -104.97 -0.62 -1.81 16 10 C -0.11 -1.33 9.54 -39.19 -0.37 -1.71 16 11 C -0.02 -0.28 9.50 -39.64 -0.38 -0.66 16 12 C -0.65 -10.10 5.95 -39.49 -0.24 -10.34 16 13 S 2.69 47.54 5.73 -107.50 -0.62 46.92 16 14 O -0.96 -19.48 16.74 -57.17 -0.96 -20.43 16 15 O -0.98 -18.05 17.27 -57.17 -0.99 -19.04 16 16 N -1.10 -21.21 5.99 -11.66 -0.07 -21.28 16 17 C 0.24 5.77 5.98 -5.19 -0.03 5.74 16 18 C -0.53 -13.74 9.27 -34.44 -0.32 -14.06 16 19 H 0.07 1.67 7.65 -52.49 -0.40 1.27 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 22 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.03 -0.38 9.50 -39.64 -0.38 -0.76 16 27 C -0.09 -1.15 9.60 -39.19 -0.38 -1.53 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 7.75 -51.93 -0.40 -0.02 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.40 2.93 6.64 -40.82 -0.27 2.66 16 37 H 0.13 1.15 6.41 -52.49 -0.34 0.81 16 38 H 0.15 2.13 7.60 -52.48 -0.40 1.73 16 39 H 0.41 7.24 8.54 -34.47 -0.29 6.95 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 1.00 7.75 -51.93 -0.40 0.60 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.15 1.82 7.60 -52.48 -0.40 1.42 16 44 H 0.14 1.76 7.65 -52.48 -0.40 1.36 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -33.31 384.72 -10.00 -43.31 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.22 Total: 6.51 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -2.50 Total: -18.11 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.42 Total: -52.12 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -1.86 Total: -47.65 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 47.54 SS G_CDS: -0.62 Total: 46.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.31 -10.00 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025374675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.547 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds