Wall clock time and date at job start Sat Apr 11 2020 05:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46505 * 54.99758 * 3 2 1 5 5 C 1.52997 * 109.47127 * 174.99886 * 3 2 1 6 6 N 1.46500 * 109.47249 * 295.00397 * 3 2 1 7 7 C 1.34768 * 120.00056 * 154.99998 * 6 3 2 8 8 O 1.21554 * 120.00177 * 359.97438 * 7 6 3 9 9 C 1.47851 * 120.00017 * 179.97438 * 7 6 3 10 10 C 1.39573 * 120.14129 * 359.72471 * 9 7 6 11 11 C 1.37960 * 119.84915 * 179.74672 * 10 9 7 12 12 C 1.38359 * 120.14769 * 0.52756 * 11 10 9 13 13 S 1.76200 * 119.85734 * 179.76583 * 12 11 10 14 14 O 1.42097 * 106.40067 * 23.52187 * 13 12 11 15 15 O 1.42099 * 106.40192 * 156.43984 * 13 12 11 16 16 N 1.65596 * 107.21731 * 269.97811 * 13 12 11 17 17 C 1.46507 * 119.99999 * 65.00133 * 16 13 12 18 18 C 1.50696 * 109.46975 * 165.00010 * 17 16 13 19 19 H 1.07998 * 120.00284 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99632 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00286 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00086 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46968 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47163 * 119.99621 * 22 20 18 25 25 H 1.48500 * 109.47265 * 240.00308 * 22 20 18 26 26 C 1.38361 * 120.28931 * 359.74407 * 12 11 10 27 27 C 1.37954 * 120.14653 * 359.97438 * 26 12 11 28 28 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47518 * 299.99758 * 1 2 3 30 30 H 1.09001 * 109.47018 * 59.99856 * 1 2 3 31 31 H 1.08995 * 109.47070 * 240.00530 * 2 1 3 32 32 H 1.09001 * 109.47018 * 120.00144 * 2 1 3 33 33 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 35 35 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 36 36 H 0.97001 * 119.99547 * 334.99826 * 6 3 2 37 37 H 1.07992 * 120.07609 * 0.02562 * 10 9 7 38 38 H 1.08003 * 119.92911 * 180.27626 * 11 10 9 39 39 H 0.97000 * 120.00266 * 244.99338 * 16 13 12 40 40 H 1.08995 * 109.46483 * 284.99815 * 17 16 13 41 41 H 1.08996 * 109.46844 * 44.99468 * 17 16 13 42 42 H 0.96995 * 120.00510 * 180.02562 * 21 20 18 43 43 H 1.08007 * 119.92768 * 179.97438 * 26 12 11 44 44 H 1.08006 * 120.07612 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0976 -1.2518 7 6 1.5255 3.4384 -1.2995 8 8 1.7323 4.1043 -0.3038 9 6 1.1349 4.0996 -2.5629 10 6 0.9023 3.3384 -3.7095 11 6 0.5330 3.9610 -4.8838 12 6 0.4036 5.3378 -4.9295 13 16 -0.0626 6.1256 -6.4350 14 8 -0.7478 5.1471 -7.2045 15 8 -0.6386 7.3733 -6.0734 16 7 1.3316 6.4751 -7.2574 17 6 2.1865 5.3896 -7.7445 18 6 3.1654 5.9348 -8.7522 19 1 3.1518 6.9847 -9.0050 20 6 4.0776 5.0930 -9.3523 21 7 4.0939 3.8144 -9.0450 22 14 5.2906 5.7685 -10.6021 23 1 5.0669 7.2269 -10.7708 24 1 6.6767 5.5319 -10.1245 25 1 5.0921 5.0838 -11.9048 26 6 0.6382 6.0986 -3.7979 27 6 1.0025 5.4880 -2.6157 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9281 2.4721 0.1262 34 1 3.9994 0.9054 -0.7161 35 1 3.8532 0.9570 1.0571 36 1 1.4870 1.5662 -2.0462 37 1 1.0068 2.2640 -3.6762 38 1 0.3483 3.3729 -5.7706 39 1 1.5822 7.3986 -7.4168 40 1 2.7317 4.9533 -6.9076 41 1 1.5693 4.6242 -8.2147 42 1 4.7358 3.2222 -9.4668 43 1 0.5359 7.1730 -3.8402 44 1 1.1857 6.0831 -1.7332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025374675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:04 Heat of formation + Delta-G solvation = -124.556999 kcal Electronic energy + Delta-G solvation = -27023.589968 eV Core-core repulsion = 23066.313195 eV Total energy + Delta-G solvation = -3957.276773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.50489 -39.64977 -38.32780 -37.50596 -36.95546 -36.47487 -34.12690 -33.92461 -32.38426 -32.09641 -30.59375 -28.72348 -25.95620 -24.61031 -24.48453 -23.88185 -22.20421 -21.67255 -20.58567 -19.47187 -19.15395 -18.47651 -17.73035 -17.62738 -17.16938 -16.55559 -16.32338 -16.08986 -15.85513 -15.44867 -15.23032 -14.87660 -14.72359 -14.70489 -14.59750 -14.33417 -14.14447 -14.10654 -13.90062 -13.57656 -13.27819 -13.22384 -13.13725 -12.78654 -12.69763 -12.51290 -12.41086 -12.30234 -12.13757 -12.05792 -11.97420 -11.65009 -11.39308 -11.17938 -10.85533 -10.63555 -10.22126 -10.18610 -10.11179 -8.24293 -6.35126 -0.85307 -0.50758 0.15140 1.44692 1.45314 1.46984 1.58258 1.97463 2.12188 2.42624 2.50356 2.77763 3.11177 3.27891 3.46068 3.64941 3.75822 3.78964 4.05421 4.11925 4.16368 4.24847 4.42129 4.47122 4.60215 4.60691 4.73268 4.77803 4.80281 4.86712 4.90607 4.95833 5.03814 5.10447 5.15198 5.25671 5.28902 5.32615 5.40056 5.46001 5.58865 5.75839 5.98575 6.31207 6.36090 6.78621 7.01503 7.34247 8.86836 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.002979 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.553953 B = 9397.527434 C =10858.970038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C 0.137 3.863 4 H 0.074 0.926 5 C -0.163 4.163 6 N -0.704 5.704 7 C 0.560 3.440 8 O -0.566 6.566 9 C -0.093 4.093 10 C -0.098 4.098 11 C -0.036 4.036 12 C -0.656 4.656 13 S 2.708 3.292 14 O -0.988 6.988 15 O -0.983 6.983 16 N -1.102 6.102 17 C 0.257 3.743 18 C -0.549 4.549 19 H 0.073 0.927 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.968 3.032 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.280 1.280 26 C -0.031 4.031 27 C -0.090 4.090 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.413 0.587 37 H 0.170 0.830 38 H 0.149 0.851 39 H 0.419 0.581 40 H 0.015 0.985 41 H 0.017 0.983 42 H 0.268 0.732 43 H 0.161 0.839 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -7.573 17.292 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C 0.033 3.967 4 H 0.092 0.908 5 C -0.221 4.221 6 N -0.357 5.357 7 C 0.347 3.653 8 O -0.446 6.446 9 C -0.096 4.096 10 C -0.117 4.117 11 C -0.055 4.055 12 C -0.744 4.744 13 S 2.799 3.201 14 O -0.978 6.978 15 O -0.974 6.974 16 N -0.864 5.864 17 C 0.133 3.867 18 C -0.588 4.588 19 H 0.091 0.909 20 C -0.190 4.190 21 N -0.562 5.562 22 Si 0.793 3.207 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.206 1.206 26 C -0.050 4.050 27 C -0.110 4.110 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.251 0.749 37 H 0.187 0.813 38 H 0.167 0.833 39 H 0.255 0.745 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.178 0.822 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.934 -7.332 17.737 19.817 hybrid contribution 1.151 0.173 -0.680 1.348 sum -3.783 -7.159 17.057 18.881 Atomic orbital electron populations 1.21805 0.95453 1.02387 1.01703 1.21825 0.96313 0.93376 1.04660 1.21193 0.95291 0.94314 0.85865 0.90818 1.22175 0.94851 1.01546 1.03536 1.46013 1.68807 1.05767 1.15077 1.18263 0.76757 0.83052 0.87271 1.90756 1.51863 1.65092 1.36900 1.20388 1.00349 0.94981 0.93875 1.21661 0.97498 1.01614 0.90917 1.21151 0.92216 0.92497 0.99629 1.31104 1.17081 1.05855 1.20403 1.01167 0.72763 0.72701 0.73504 1.93531 1.72132 1.62981 1.69177 1.93521 1.76242 1.43038 1.84549 1.55272 1.43433 1.16604 1.71042 1.18719 0.89029 0.84887 0.94095 1.21646 1.16890 0.96157 1.24133 0.90893 1.25817 0.99254 0.95070 0.98809 1.70030 1.37385 1.04617 1.44127 0.85347 0.78215 0.78868 0.78262 1.18710 1.20355 1.20582 1.21113 0.92120 1.01123 0.90659 1.21516 0.96905 0.93855 0.98685 0.91286 0.93291 0.93086 0.89913 0.88705 0.94515 0.91441 0.89709 0.74860 0.81254 0.83288 0.74513 0.96739 0.96502 0.92261 0.82175 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.80 71.98 0.71 -0.89 16 2 C -0.12 -1.12 5.47 30.60 0.17 -0.95 16 3 C 0.14 2.03 2.57 44.99 0.12 2.14 16 4 H 0.07 1.37 7.58 -2.39 -0.02 1.35 16 5 C -0.16 -2.41 9.48 71.98 0.68 -1.73 16 6 N -0.70 -11.93 4.48 -445.41 -2.00 -13.93 16 7 C 0.56 13.58 7.74 86.79 0.67 14.25 16 8 O -0.57 -17.38 16.01 -3.89 -0.06 -17.44 16 9 C -0.09 -2.31 5.87 -20.09 -0.12 -2.43 16 10 C -0.10 -2.24 9.54 22.53 0.21 -2.03 16 11 C -0.04 -1.02 9.50 22.23 0.21 -0.81 16 12 C -0.66 -20.38 5.95 22.33 0.13 -20.25 16 13 S 2.71 96.50 5.73 -56.49 -0.32 96.17 16 14 O -0.99 -40.90 16.74 -128.00 -2.14 -43.05 16 15 O -0.98 -36.12 17.27 -128.00 -2.21 -38.33 16 16 N -1.10 -42.85 5.99 -190.79 -1.14 -43.99 16 17 C 0.26 12.33 5.98 85.63 0.51 12.84 16 18 C -0.55 -28.55 9.27 25.60 0.24 -28.32 16 19 H 0.07 3.61 7.65 -2.91 -0.02 3.58 16 20 C 0.01 0.57 5.46 84.66 0.46 1.03 16 21 N -0.92 -51.16 13.29 21.45 0.28 -50.87 16 22 Si 0.97 41.35 29.54 68.60 2.03 43.37 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 C -0.03 -0.86 9.50 22.23 0.21 -0.65 16 27 C -0.09 -2.36 9.60 22.53 0.22 -2.14 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.58 7.75 -2.39 -0.02 0.56 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.93 8.14 -2.38 -0.02 0.92 16 36 H 0.41 4.94 6.64 -92.71 -0.62 4.32 16 37 H 0.17 2.46 6.41 -2.91 -0.02 2.44 16 38 H 0.15 4.25 7.60 -2.91 -0.02 4.23 16 39 H 0.42 14.76 8.54 -96.75 -0.83 13.93 16 40 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.02 0.89 7.75 -2.39 -0.02 0.87 16 42 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.16 3.86 7.60 -2.91 -0.02 3.84 16 44 H 0.15 3.65 7.65 -2.91 -0.02 3.63 16 Total: -1.00 -71.06 384.72 -1.55 -72.62 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.41 Total: 25.38 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 4.42 Total: -29.92 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -2.85 Total: -108.79 kcal Atomic # 8 Polarization: -94.41 SS G_CDS: -4.41 Total: -98.82 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 96.50 SS G_CDS: -0.32 Total: 96.17 kcal Total: -71.06 -1.55 -72.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025374675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.941 kcal (2) G-P(sol) polarization free energy of solvation -71.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds