Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47400 * 2 1 4 4 C 1.53002 * 109.47093 * 120.00118 * 2 1 3 5 5 N 1.46494 * 109.47221 * 65.00173 * 4 2 1 6 6 C 1.34783 * 120.00396 * 180.02562 * 5 4 2 7 7 O 1.21558 * 119.99423 * 0.02562 * 6 5 4 8 8 C 1.47838 * 120.00536 * 179.97438 * 6 5 4 9 9 C 1.39573 * 120.14815 * 179.97438 * 8 6 5 10 10 C 1.37958 * 119.85588 * 180.02562 * 9 8 6 11 11 C 1.38358 * 120.14626 * 0.02562 * 10 9 8 12 12 S 1.76197 * 119.85557 * 179.97438 * 11 10 9 13 13 O 1.42100 * 106.39925 * 336.45745 * 12 11 10 14 14 O 1.42103 * 106.39966 * 203.53861 * 12 11 10 15 15 N 1.65597 * 107.21750 * 89.99841 * 12 11 10 16 16 C 1.46506 * 120.00079 * 65.00357 * 15 12 11 17 17 C 1.50699 * 109.47214 * 164.72113 * 16 15 12 18 18 H 1.07997 * 119.99775 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00023 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00046 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46878 * 90.00759 * 21 19 17 23 23 H 1.48502 * 109.46989 * 210.00009 * 21 19 17 24 24 H 1.48494 * 109.47262 * 330.00278 * 21 19 17 25 25 C 1.38363 * 120.28836 * 0.23419 * 11 10 9 26 26 C 1.37951 * 120.14604 * 359.48486 * 25 11 10 27 27 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46892 * 299.99814 * 1 2 3 29 29 H 1.09003 * 109.46986 * 59.99999 * 1 2 3 30 30 H 1.09004 * 109.47057 * 239.99602 * 2 1 3 31 31 H 1.09001 * 109.47157 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47052 * 299.99961 * 3 2 1 33 33 H 1.08997 * 109.47012 * 59.99671 * 3 2 1 34 34 H 1.08999 * 109.47157 * 304.99836 * 4 2 1 35 35 H 1.08999 * 109.47030 * 184.99861 * 4 2 1 36 36 H 0.97002 * 120.00608 * 359.97438 * 5 4 2 37 37 H 1.08007 * 120.07096 * 0.02562 * 9 8 6 38 38 H 1.08000 * 119.92453 * 180.02562 * 10 9 8 39 39 H 0.97005 * 120.00050 * 244.72378 * 15 12 11 40 40 H 1.08999 * 109.46682 * 284.72550 * 16 15 12 41 41 H 1.09000 * 109.47243 * 44.71866 * 16 15 12 42 42 H 0.97001 * 120.00013 * 179.97438 * 20 19 17 43 43 H 1.07996 * 119.92369 * 179.74857 * 25 11 10 44 44 H 1.08005 * 120.07562 * 180.25917 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 1.9956 -2.9681 2.1911 7 8 2.6262 -2.5500 3.1425 8 6 1.6041 -4.3925 2.1322 9 6 1.9582 -5.2602 3.1665 10 6 1.5902 -6.5884 3.1050 11 6 0.8720 -7.0609 2.0210 12 16 0.4065 -8.7588 1.9501 13 8 1.3243 -9.4613 2.7766 14 8 0.2073 -9.0632 0.5764 15 7 -1.0749 -8.8918 2.6781 16 6 -2.2445 -8.2399 2.0835 17 6 -3.5001 -8.8042 2.6968 18 1 -3.4335 -9.5719 3.4534 19 6 -4.7337 -8.3403 2.2919 20 7 -4.8147 -7.4057 1.3701 21 14 -6.2901 -9.0403 3.0516 22 1 -6.6593 -8.2419 4.2480 23 1 -7.3936 -8.9843 2.0594 24 1 -6.0547 -10.4510 3.4511 25 6 0.5223 -6.2072 0.9898 26 6 0.8791 -4.8756 1.0417 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 1.1483 -2.4663 0.4319 37 1 2.5192 -4.8927 4.0131 38 1 1.8633 -7.2607 3.9049 39 1 -1.1691 -9.4047 3.4960 40 1 -2.1979 -7.1674 2.2727 41 1 -2.2530 -8.4191 1.0084 42 1 -5.6826 -7.0796 1.0850 43 1 -0.0348 -6.5832 0.1445 44 1 0.6020 -4.2093 0.2381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025379540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -102.260588 kcal Electronic energy + Delta-G solvation = -26793.739901 eV Core-core repulsion = 22837.429972 eV Total energy + Delta-G solvation = -3956.309929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45006 -38.56155 -36.95686 -36.80548 -35.42266 -34.69419 -33.76802 -32.21140 -31.52406 -31.11071 -27.60210 -26.85536 -26.79787 -24.08108 -22.84407 -22.50056 -21.01464 -20.62540 -19.17036 -18.32771 -17.59021 -17.11835 -16.65611 -15.97733 -15.92604 -15.54617 -15.24736 -14.92920 -14.78647 -14.49352 -14.40175 -13.87430 -13.70359 -13.56531 -13.32902 -13.07968 -12.93186 -12.73210 -12.57741 -12.42559 -12.17786 -11.87488 -11.69128 -11.60753 -11.56421 -11.39235 -11.30808 -11.15662 -10.99533 -10.82654 -10.74099 -10.19624 -10.16206 -9.55614 -9.49238 -9.30446 -9.13374 -8.96753 -8.30013 -6.23363 -4.27763 0.29885 0.90617 1.23221 2.51775 2.82732 3.22213 3.28991 3.31945 3.48045 3.70728 4.17394 4.26618 4.30520 4.42507 4.45247 4.48654 4.59517 4.76195 4.89058 5.08489 5.14102 5.18373 5.18493 5.26157 5.35999 5.40513 5.44482 5.48940 5.52491 5.67296 5.80736 5.84737 5.88347 5.94665 6.03667 6.05804 6.12797 6.35858 6.66848 7.15788 7.20833 7.26587 7.72310 7.74727 7.89952 8.11190 8.76191 9.37535 10.87004 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.002955 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.245243 B = 9473.922071 C =11376.933550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.145 4.145 4 C 0.123 3.877 5 N -0.725 5.725 6 C 0.558 3.442 7 O -0.533 6.533 8 C -0.091 4.091 9 C -0.085 4.085 10 C -0.027 4.027 11 C -0.646 4.646 12 S 2.689 3.311 13 O -0.976 6.976 14 O -0.958 6.958 15 N -1.101 6.101 16 C 0.245 3.755 17 C -0.530 4.530 18 H 0.066 0.934 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.019 4.019 26 C -0.109 4.109 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.412 0.588 40 H 0.022 0.978 41 H 0.040 0.960 42 H 0.266 0.734 43 H 0.150 0.850 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.232 13.619 -2.906 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.128 4.128 3 C -0.203 4.203 4 C -0.001 4.001 5 N -0.378 5.378 6 C 0.346 3.654 7 O -0.410 6.410 8 C -0.094 4.094 9 C -0.105 4.105 10 C -0.046 4.046 11 C -0.730 4.730 12 S 2.776 3.224 13 O -0.966 6.966 14 O -0.948 6.948 15 N -0.864 5.864 16 C 0.122 3.878 17 C -0.569 4.569 18 H 0.085 0.915 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.038 4.038 26 C -0.128 4.128 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.239 0.761 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.247 0.753 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.168 0.832 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.068 13.541 -2.890 19.039 hybrid contribution -1.393 0.228 0.467 1.487 sum 11.675 13.769 -2.423 18.214 Atomic orbital electron populations 1.21902 0.94356 1.02290 1.02407 1.21381 0.96752 0.97023 0.97691 1.21760 1.01211 0.94869 1.02416 1.21489 1.00200 0.79888 0.98491 1.45953 1.58011 1.09963 1.23862 1.18307 0.79182 0.85663 0.82294 1.90776 1.39690 1.77650 1.32923 1.20161 0.99655 0.93210 0.96412 1.21332 0.98461 0.92668 0.97990 1.20932 0.92397 0.95595 0.95646 1.31528 1.11271 1.27843 1.02375 1.01979 0.72914 0.73423 0.74054 1.93539 1.63052 1.70862 1.69154 1.93576 1.85657 1.82088 1.33513 1.55440 1.23701 1.66288 1.40948 1.19114 0.81893 0.92372 0.94415 1.21186 0.89999 1.22537 1.23221 0.91545 1.24962 0.99328 0.94916 0.94946 1.69927 1.25360 1.28110 1.29450 0.86408 0.82116 0.79520 0.78868 1.20507 1.21008 1.19663 1.20974 0.93718 0.92569 0.96566 1.21350 0.97915 0.96153 0.97422 0.92405 0.92217 0.92142 0.90395 0.92331 0.92019 0.92231 0.91122 0.91240 0.76128 0.83928 0.83537 0.75328 0.96010 0.94246 0.92450 0.83189 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.07 37.16 0.34 -0.63 16 2 C -0.11 -0.66 2.96 -90.62 -0.27 -0.93 16 3 C -0.14 -0.76 9.19 37.16 0.34 -0.41 16 4 C 0.12 1.02 5.06 -4.04 -0.02 1.00 16 5 N -0.72 -6.92 5.24 -61.25 -0.32 -7.24 16 6 C 0.56 7.22 7.77 -12.33 -0.10 7.12 16 7 O -0.53 -8.46 16.35 5.31 0.09 -8.37 16 8 C -0.09 -1.20 5.87 -104.97 -0.62 -1.82 16 9 C -0.08 -1.15 9.60 -39.19 -0.38 -1.53 16 10 C -0.03 -0.38 9.50 -39.64 -0.38 -0.75 16 11 C -0.65 -10.08 5.95 -39.49 -0.24 -10.31 16 12 S 2.69 47.34 5.74 -107.50 -0.62 46.73 16 13 O -0.98 -17.98 17.27 -57.17 -0.99 -18.97 16 14 O -0.96 -19.41 16.73 -57.17 -0.96 -20.37 16 15 N -1.10 -21.16 5.99 -11.65 -0.07 -21.23 16 16 C 0.25 5.78 5.98 -5.19 -0.03 5.75 16 17 C -0.53 -13.75 9.27 -34.44 -0.32 -14.07 16 18 H 0.07 1.65 7.65 -52.49 -0.40 1.25 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 21 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 C -0.02 -0.28 9.50 -39.64 -0.38 -0.66 16 26 C -0.11 -1.34 9.54 -39.19 -0.37 -1.72 16 27 H 0.06 0.38 7.18 -51.93 -0.37 0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.40 2.99 5.69 -40.82 -0.23 2.76 16 37 H 0.14 1.77 7.65 -52.48 -0.40 1.37 16 38 H 0.15 1.82 7.60 -52.49 -0.40 1.42 16 39 H 0.41 7.22 8.54 -34.47 -0.29 6.93 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 1.00 7.75 -51.93 -0.40 0.60 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.15 2.12 7.60 -52.49 -0.40 1.72 16 44 H 0.13 1.15 6.41 -52.48 -0.34 0.81 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -33.46 383.83 -10.05 -43.52 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.18 Total: 6.08 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -2.51 Total: -17.42 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.35 Total: -52.31 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -1.86 Total: -47.70 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 47.34 SS G_CDS: -0.62 Total: 46.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.46 -10.05 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025379540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.745 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds