Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34176 * 127.02205 * 2 1 4 4 O 1.34217 * 109.12282 * 179.97438 * 3 2 1 5 5 C 1.33651 * 110.90837 * 359.71887 * 4 3 2 6 6 C 1.36414 * 108.39470 * 0.45269 * 5 4 3 7 7 C 1.47378 * 127.18687 * 179.83133 * 6 5 4 8 8 O 1.21613 * 120.00294 * 215.16717 * 7 6 5 9 9 N 1.34776 * 120.00448 * 35.17474 * 7 6 5 10 10 C 1.46503 * 119.99748 * 355.63111 * 9 7 6 11 11 C 1.46501 * 120.00469 * 175.62414 * 9 7 6 12 12 H 1.09002 * 109.46637 * 0.02562 * 11 9 7 13 13 C 1.53002 * 109.47350 * 240.00036 * 11 9 7 14 14 C 1.53000 * 109.46808 * 119.99894 * 11 9 7 15 15 N 1.46494 * 109.47287 * 305.00438 * 14 11 9 16 16 C 1.34781 * 119.99896 * 180.02562 * 15 14 11 17 17 O 1.21280 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00020 * 179.97438 * 16 15 14 19 19 S 1.80996 * 109.47373 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00126 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99818 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99645 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00401 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99562 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46991 * 90.00005 * 24 22 20 26 26 H 1.48495 * 109.47193 * 209.99872 * 24 22 20 27 27 H 1.48501 * 109.47294 * 329.99789 * 24 22 20 28 28 H 1.08995 * 109.47404 * 270.02982 * 1 2 3 29 29 H 1.08994 * 109.47067 * 30.02982 * 1 2 3 30 30 H 1.09006 * 109.46870 * 150.03145 * 1 2 3 31 31 H 1.07997 * 125.43708 * 359.96871 * 3 2 1 32 32 H 1.08000 * 125.80032 * 180.28523 * 5 4 3 33 33 H 1.09005 * 109.47004 * 275.40112 * 10 9 7 34 34 H 1.08999 * 109.47576 * 35.39253 * 10 9 7 35 35 H 1.08997 * 109.47257 * 155.39759 * 10 9 7 36 36 H 1.09001 * 109.46906 * 300.00051 * 13 11 9 37 37 H 1.09001 * 109.47017 * 60.00159 * 13 11 9 38 38 H 1.09000 * 109.47053 * 179.97438 * 13 11 9 39 39 H 1.09004 * 109.46998 * 65.00151 * 14 11 9 40 40 H 1.08999 * 109.46882 * 185.00188 * 14 11 9 41 41 H 0.97003 * 120.00441 * 359.97438 * 15 14 11 42 42 H 1.09006 * 109.47141 * 300.00219 * 18 16 15 43 43 H 1.09008 * 109.47376 * 59.99704 * 18 16 15 44 44 H 0.96995 * 119.99944 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 0.0006 5 6 3.6623 -0.6759 0.0071 6 6 2.3923 -1.1738 0.0008 7 6 1.9914 -2.5920 0.0010 8 8 1.0010 -2.9441 -0.6106 9 7 2.7224 -3.4988 0.6792 10 6 3.9671 -3.0927 1.3363 11 6 2.2721 -4.8906 0.7593 12 1 1.3347 -5.0011 0.2141 13 6 2.0586 -5.2741 2.2250 14 6 3.3316 -5.8056 0.1419 15 7 3.6227 -5.3635 -1.2241 16 6 4.5315 -6.0254 -1.9674 17 8 5.1087 -6.9867 -1.5052 18 6 4.8306 -5.5709 -3.3728 19 16 6.0840 -6.6533 -4.1031 20 6 6.2368 -5.9138 -5.6951 21 1 5.6399 -5.0503 -5.9489 22 6 7.1235 -6.4418 -6.6233 23 7 7.8506 -7.4946 -6.3141 24 14 7.2850 -5.6583 -8.3114 25 1 8.3368 -4.6109 -8.2723 26 1 7.6571 -6.6967 -9.3055 27 1 5.9892 -5.0445 -8.6982 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 1.9894 2.1010 -0.0005 32 1 4.5702 -1.2608 0.0133 33 1 4.7841 -3.1189 0.6151 34 1 3.8589 -2.0804 1.7258 35 1 4.1847 -3.7763 2.1569 36 1 2.9962 -5.1636 2.7698 37 1 1.3038 -4.6222 2.6648 38 1 1.7232 -6.3095 2.2845 39 1 4.2421 -5.7622 0.7396 40 1 2.9593 -6.8299 0.1207 41 1 3.1608 -4.5948 -1.5939 42 1 3.9198 -5.6142 -3.9702 43 1 5.2030 -4.5466 -3.3520 44 1 8.4700 -7.8637 -6.9629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725954638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -54.445238 kcal Electronic energy + Delta-G solvation = -27117.655499 eV Core-core repulsion = 23163.419000 eV Total energy + Delta-G solvation = -3954.236499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.93018 -40.34844 -38.96427 -36.81882 -34.42113 -34.02483 -32.43300 -32.39368 -30.38457 -29.36985 -27.69771 -27.33929 -26.01282 -25.37821 -24.17146 -21.47094 -20.77588 -20.29585 -19.54974 -17.96266 -17.84302 -17.07217 -16.59280 -16.38009 -16.27720 -15.87149 -15.29599 -15.07792 -14.79484 -14.76515 -14.10831 -13.97552 -13.78722 -13.52608 -13.42971 -13.25105 -13.11681 -12.94048 -12.83550 -12.71620 -12.53445 -12.46903 -12.15880 -11.86384 -11.75839 -11.23965 -11.05248 -11.01306 -10.75080 -10.26384 -9.81635 -9.80761 -9.42601 -9.07064 -9.06033 -9.00945 -8.88887 -8.23138 -6.49116 -6.20848 -3.91238 1.08822 1.69740 2.43057 2.65620 2.85549 3.04957 3.10396 3.23308 3.28944 3.33908 3.72877 4.11723 4.21297 4.21658 4.41973 4.60195 4.67370 4.72849 4.86798 4.89948 5.07150 5.10123 5.14357 5.16000 5.24250 5.28463 5.35458 5.38812 5.49996 5.51127 5.58544 5.66402 5.69411 5.71674 5.84782 5.90373 6.09557 6.15620 6.17039 6.60839 6.63090 6.96835 7.60911 7.70009 7.83833 8.36532 8.61008 9.24664 10.86606 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.002777 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.144906 B =10079.459787 C =11688.815786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.136 4.136 3 C -0.044 4.044 4 O -0.171 6.171 5 C 0.020 3.980 6 C -0.232 4.232 7 C 0.589 3.411 8 O -0.529 6.529 9 N -0.605 5.605 10 C 0.064 3.936 11 C 0.125 3.875 12 H 0.110 0.890 13 C -0.158 4.158 14 C 0.113 3.887 15 N -0.735 5.735 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.207 0.793 32 H 0.215 0.785 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.017 16.228 20.061 28.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C -0.110 4.110 4 O -0.066 6.066 5 C -0.050 4.050 6 C -0.236 4.236 7 C 0.378 3.622 8 O -0.406 6.406 9 N -0.339 5.339 10 C -0.078 4.078 11 C 0.022 3.978 12 H 0.128 0.872 13 C -0.216 4.216 14 C -0.013 4.013 15 N -0.390 5.390 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.224 0.776 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.212 14.475 20.458 27.878 hybrid contribution -0.732 1.887 -1.767 2.687 sum -12.944 16.363 18.691 28.011 Atomic orbital electron populations 1.20251 0.88466 1.03681 1.02273 1.21369 0.97131 0.90311 1.05017 1.23730 0.79742 0.99713 1.07812 1.83817 1.29565 1.22405 1.70839 1.24788 0.98976 0.80957 1.00328 1.21280 0.93578 0.94034 1.14746 1.17360 0.82620 0.83924 0.78297 1.90797 1.26736 1.80362 1.42742 1.47760 1.24241 1.08945 1.52981 1.22102 0.85723 1.01771 0.98249 1.21432 0.99139 0.79505 0.97760 0.87170 1.22068 1.02582 1.02583 0.94400 1.21653 0.98201 0.98016 0.83394 1.45944 1.44048 1.34469 1.14551 1.20296 0.78237 0.82566 0.87054 1.90697 1.49498 1.26503 1.72580 1.23530 1.06104 1.05647 0.95114 1.85348 1.46217 1.38452 1.13226 1.22876 1.28227 1.17867 0.99378 0.90948 1.24988 0.94718 0.94891 0.98956 1.70016 1.23584 1.21248 1.35498 0.86170 0.78598 0.78830 0.81932 1.20269 1.20739 1.19667 0.91433 0.91356 0.89964 0.77649 0.76898 0.91922 0.90586 0.90049 0.91763 0.91721 0.90608 0.91241 0.90332 0.76790 0.89252 0.89434 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.33 36.01 0.37 -0.35 16 2 C -0.14 -1.26 6.37 -102.50 -0.65 -1.91 16 3 C -0.04 -0.32 11.96 29.30 0.35 0.03 16 4 O -0.17 -1.44 10.52 7.65 0.08 -1.36 16 5 C 0.02 0.16 9.84 30.07 0.30 0.45 16 6 C -0.23 -2.32 5.62 -103.28 -0.58 -2.90 16 7 C 0.59 6.64 7.29 -12.54 -0.09 6.55 16 8 O -0.53 -7.66 15.34 5.27 0.08 -7.58 16 9 N -0.61 -5.39 2.24 -175.21 -0.39 -5.78 16 10 C 0.06 0.41 8.13 59.85 0.49 0.89 16 11 C 0.12 1.13 2.79 -67.93 -0.19 0.94 16 12 H 0.11 1.18 6.91 -51.93 -0.36 0.82 16 13 C -0.16 -1.03 9.18 37.16 0.34 -0.69 16 14 C 0.11 1.27 4.97 -4.04 -0.02 1.25 16 15 N -0.74 -10.39 5.39 -60.30 -0.32 -10.72 16 16 C 0.53 10.12 7.85 -10.98 -0.09 10.04 16 17 O -0.52 -11.72 15.86 5.56 0.09 -11.63 16 18 C -0.15 -3.20 6.16 36.00 0.22 -2.98 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 24 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.84 7.09 -51.93 -0.37 0.47 16 31 H 0.21 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.21 1.17 6.10 -52.49 -0.32 0.85 16 33 H 0.06 0.40 7.34 -51.93 -0.38 0.02 16 34 H 0.08 0.39 5.84 -51.93 -0.30 0.09 16 35 H 0.08 0.42 6.44 -51.93 -0.33 0.08 16 36 H 0.06 0.36 6.67 -51.93 -0.35 0.01 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.77 7.84 -51.93 -0.41 0.37 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.40 5.31 7.87 -40.82 -0.32 4.99 16 42 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 43 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -37.24 382.76 -6.62 -43.86 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.07 Total: 2.10 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 0.64 Total: -1.83 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.02 Total: -42.12 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.25 Total: -20.58 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.24 -6.62 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725954638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.580 kcal (2) G-P(sol) polarization free energy of solvation -37.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds