Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34176 * 127.02205 * 2 1 4 4 O 1.34217 * 109.12282 * 179.97438 * 3 2 1 5 5 C 1.33651 * 110.90837 * 359.71887 * 4 3 2 6 6 C 1.36414 * 108.39470 * 0.45269 * 5 4 3 7 7 C 1.47378 * 127.18687 * 179.83133 * 6 5 4 8 8 O 1.21613 * 120.00294 * 215.16717 * 7 6 5 9 9 N 1.34776 * 120.00448 * 35.17474 * 7 6 5 10 10 C 1.46503 * 119.99748 * 355.63111 * 9 7 6 11 11 C 1.46501 * 120.00469 * 175.62414 * 9 7 6 12 12 H 1.09002 * 109.46637 * 0.02562 * 11 9 7 13 13 C 1.53002 * 109.47350 * 240.00036 * 11 9 7 14 14 C 1.53000 * 109.46808 * 119.99894 * 11 9 7 15 15 N 1.46494 * 109.47287 * 305.00438 * 14 11 9 16 16 C 1.34781 * 119.99896 * 180.02562 * 15 14 11 17 17 O 1.21280 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00020 * 179.97438 * 16 15 14 19 19 S 1.80996 * 109.47373 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00126 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99818 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99645 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00401 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99562 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46991 * 90.00005 * 24 22 20 26 26 H 1.48495 * 109.47193 * 209.99872 * 24 22 20 27 27 H 1.48501 * 109.47294 * 329.99789 * 24 22 20 28 28 H 1.08995 * 109.47404 * 270.02982 * 1 2 3 29 29 H 1.08994 * 109.47067 * 30.02982 * 1 2 3 30 30 H 1.09006 * 109.46870 * 150.03145 * 1 2 3 31 31 H 1.07997 * 125.43708 * 359.96871 * 3 2 1 32 32 H 1.08000 * 125.80032 * 180.28523 * 5 4 3 33 33 H 1.09005 * 109.47004 * 275.40112 * 10 9 7 34 34 H 1.08999 * 109.47576 * 35.39253 * 10 9 7 35 35 H 1.08997 * 109.47257 * 155.39759 * 10 9 7 36 36 H 1.09001 * 109.46906 * 300.00051 * 13 11 9 37 37 H 1.09001 * 109.47017 * 60.00159 * 13 11 9 38 38 H 1.09000 * 109.47053 * 179.97438 * 13 11 9 39 39 H 1.09004 * 109.46998 * 65.00151 * 14 11 9 40 40 H 1.08999 * 109.46882 * 185.00188 * 14 11 9 41 41 H 0.97003 * 120.00441 * 359.97438 * 15 14 11 42 42 H 1.09006 * 109.47141 * 300.00219 * 18 16 15 43 43 H 1.09008 * 109.47376 * 59.99704 * 18 16 15 44 44 H 0.96995 * 119.99944 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 0.0006 5 6 3.6623 -0.6759 0.0071 6 6 2.3923 -1.1738 0.0008 7 6 1.9914 -2.5920 0.0010 8 8 1.0010 -2.9441 -0.6106 9 7 2.7224 -3.4988 0.6792 10 6 3.9671 -3.0927 1.3363 11 6 2.2721 -4.8906 0.7593 12 1 1.3347 -5.0011 0.2141 13 6 2.0586 -5.2741 2.2250 14 6 3.3316 -5.8056 0.1419 15 7 3.6227 -5.3635 -1.2241 16 6 4.5315 -6.0254 -1.9674 17 8 5.1087 -6.9867 -1.5052 18 6 4.8306 -5.5709 -3.3728 19 16 6.0840 -6.6533 -4.1031 20 6 6.2368 -5.9138 -5.6951 21 1 5.6399 -5.0503 -5.9489 22 6 7.1235 -6.4418 -6.6233 23 7 7.8506 -7.4946 -6.3141 24 14 7.2850 -5.6583 -8.3114 25 1 8.3368 -4.6109 -8.2723 26 1 7.6571 -6.6967 -9.3055 27 1 5.9892 -5.0445 -8.6982 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 1.9894 2.1010 -0.0005 32 1 4.5702 -1.2608 0.0133 33 1 4.7841 -3.1189 0.6151 34 1 3.8589 -2.0804 1.7258 35 1 4.1847 -3.7763 2.1569 36 1 2.9962 -5.1636 2.7698 37 1 1.3038 -4.6222 2.6648 38 1 1.7232 -6.3095 2.2845 39 1 4.2421 -5.7622 0.7396 40 1 2.9593 -6.8299 0.1207 41 1 3.1608 -4.5948 -1.5939 42 1 3.9198 -5.6142 -3.9702 43 1 5.2030 -4.5466 -3.3520 44 1 8.4700 -7.8637 -6.9629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725954638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = -80.425147 kcal Electronic energy + Delta-G solvation = -27118.782072 eV Core-core repulsion = 23163.419000 eV Total energy + Delta-G solvation = -3955.363073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.55205 -41.26452 -40.33525 -37.75207 -35.44181 -34.80515 -34.60345 -33.29776 -31.24440 -30.69041 -28.30252 -27.94382 -27.75766 -26.82523 -24.93810 -22.14470 -21.79056 -21.41201 -20.31945 -19.80031 -18.63444 -17.91523 -17.83264 -17.51600 -17.10009 -16.89749 -16.78425 -16.42560 -16.18127 -15.84813 -15.42552 -14.89811 -14.74539 -14.57404 -14.50983 -14.16100 -14.04123 -13.96992 -13.86438 -13.46754 -13.44121 -13.19318 -13.18887 -13.01956 -12.90361 -12.85724 -12.60802 -12.48513 -11.97617 -11.74978 -11.16041 -11.12940 -11.02603 -10.50770 -10.32023 -10.18535 -9.82228 -9.59965 -8.68752 -8.36713 -6.14806 0.41979 1.07098 1.24058 1.40989 1.44229 1.55296 1.55709 1.72697 2.02985 2.14147 2.24369 2.27812 2.97326 3.28629 3.43875 3.63624 3.64381 3.87811 3.97637 4.04309 4.14317 4.19325 4.22840 4.31605 4.44859 4.49466 4.55790 4.56182 4.63497 4.75524 4.77197 4.84151 4.90971 4.98587 5.03906 5.05786 5.22670 5.34488 5.39817 5.47978 5.48905 6.01785 6.17832 6.22935 6.35850 7.03406 7.04653 7.14619 8.72511 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.002777 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.144906 B =10079.459787 C =11688.815786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.166 4.166 3 C -0.032 4.032 4 O -0.177 6.177 5 C 0.031 3.969 6 C -0.259 4.259 7 C 0.585 3.415 8 O -0.572 6.572 9 N -0.600 5.600 10 C 0.057 3.943 11 C 0.132 3.868 12 H 0.092 0.908 13 C -0.151 4.151 14 C 0.112 3.888 15 N -0.713 5.713 16 C 0.537 3.463 17 O -0.558 6.558 18 C -0.133 4.133 19 S -0.139 6.139 20 C -0.550 4.550 21 H 0.079 0.921 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.998 3.002 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.261 1.261 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.242 0.758 32 H 0.237 0.763 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.405 0.595 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 18.581 20.627 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.168 4.168 3 C -0.097 4.097 4 O -0.071 6.071 5 C -0.039 4.039 6 C -0.264 4.264 7 C 0.376 3.624 8 O -0.453 6.453 9 N -0.333 5.333 10 C -0.085 4.085 11 C 0.029 3.971 12 H 0.110 0.890 13 C -0.209 4.209 14 C -0.012 4.012 15 N -0.366 5.366 16 C 0.323 3.677 17 O -0.436 6.436 18 C -0.284 4.284 19 S 0.088 5.912 20 C -0.698 4.698 21 H 0.097 0.903 22 C -0.189 4.189 23 N -0.546 5.546 24 Si 0.819 3.181 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.185 1.185 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.258 0.742 32 H 0.252 0.748 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.240 0.760 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.358 16.858 21.074 29.682 hybrid contribution -0.752 1.202 -1.828 2.314 sum -13.110 18.060 19.246 29.469 Atomic orbital electron populations 1.20201 0.88235 1.03158 1.02608 1.21647 0.97743 0.90810 1.06608 1.24352 0.78920 1.00747 1.05696 1.83845 1.30136 1.22473 1.70659 1.25151 0.99018 0.80963 0.98798 1.21361 0.94794 0.93607 1.16634 1.17635 0.82210 0.84751 0.77852 1.90772 1.28653 1.81090 1.44766 1.47826 1.24723 1.08455 1.52263 1.22330 0.84366 1.03096 0.98664 1.21343 0.97355 0.79314 0.99123 0.88971 1.22028 1.03485 1.03096 0.92261 1.21872 0.99292 0.98467 0.81608 1.45754 1.42029 1.33557 1.15265 1.19936 0.78853 0.82348 0.86566 1.90688 1.51417 1.28337 1.73158 1.23378 1.04095 1.04759 0.96143 1.85457 1.49569 1.41736 1.14454 1.23198 1.28670 1.18149 0.99755 0.90284 1.26102 0.94008 0.95285 1.03535 1.70167 1.24366 1.22858 1.37196 0.84969 0.79128 0.77979 0.76010 1.19069 1.20113 1.18532 0.90709 0.89446 0.92818 0.74231 0.74755 0.91655 0.89215 0.88397 0.90223 0.91561 0.89733 0.90311 0.90574 0.76016 0.88212 0.87557 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 10.33 71.24 0.74 -0.60 16 2 C -0.17 -2.88 6.37 -18.49 -0.12 -3.00 16 3 C -0.03 -0.39 11.96 66.89 0.80 0.41 16 4 O -0.18 -2.56 10.52 4.47 0.05 -2.51 16 5 C 0.03 0.43 9.84 67.39 0.66 1.10 16 6 C -0.26 -4.93 5.62 -18.99 -0.11 -5.04 16 7 C 0.59 12.99 7.29 86.65 0.63 13.62 16 8 O -0.57 -17.02 15.34 -4.07 -0.06 -17.08 16 9 N -0.60 -9.91 2.24 -826.50 -1.85 -11.77 16 10 C 0.06 0.58 8.13 127.77 1.04 1.62 16 11 C 0.13 2.24 2.79 44.99 0.13 2.37 16 12 H 0.09 1.97 6.91 -2.39 -0.02 1.95 16 13 C -0.15 -1.67 9.18 71.98 0.66 -1.01 16 14 C 0.11 2.39 4.97 86.38 0.43 2.82 16 15 N -0.71 -19.49 5.39 -463.07 -2.49 -21.98 16 16 C 0.54 20.25 7.85 87.66 0.69 20.94 16 17 O -0.56 -25.46 15.86 -3.03 -0.05 -25.50 16 18 C -0.13 -5.50 6.16 71.24 0.44 -5.06 16 19 S -0.14 -7.82 20.57 -56.49 -1.16 -8.98 16 20 C -0.55 -31.94 9.50 67.96 0.65 -31.29 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 22 C 0.02 0.90 5.49 84.86 0.47 1.37 16 23 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 24 Si 1.00 44.10 29.55 68.60 2.03 46.12 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.15 7.09 -2.38 -0.02 1.13 16 31 H 0.24 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.24 1.99 6.10 -2.91 -0.02 1.97 16 33 H 0.06 0.67 7.34 -2.38 -0.02 0.65 16 34 H 0.09 0.70 5.84 -2.39 -0.01 0.69 16 35 H 0.10 0.70 6.44 -2.39 -0.02 0.69 16 36 H 0.08 0.66 6.67 -2.39 -0.02 0.65 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.61 7.84 -2.38 -0.02 1.59 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.40 10.39 7.87 -92.71 -0.73 9.66 16 42 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 43 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -83.24 382.76 4.14 -79.10 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.31 Total: 20.13 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 7.10 Total: -1.77 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -4.06 Total: -89.51 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -0.06 Total: -45.10 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.16 Total: -8.98 kcal Total: -83.24 4.14 -79.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725954638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.330 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds