Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47292 * 2 1 4 4 C 1.50701 * 109.47240 * 120.00252 * 2 1 3 5 5 O 1.21280 * 120.00225 * 114.51003 * 4 2 1 6 6 N 1.34776 * 119.99497 * 294.50927 * 4 2 1 7 7 C 1.46505 * 119.99993 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.47424 * 179.97438 * 7 6 4 9 9 H 1.09006 * 109.47336 * 64.99682 * 8 7 6 10 10 C 1.52997 * 109.47192 * 184.99607 * 8 7 6 11 11 O 1.42895 * 109.47082 * 55.00353 * 10 8 7 12 12 N 1.46498 * 109.47273 * 304.99896 * 8 7 6 13 13 C 1.36938 * 120.00178 * 154.99868 * 12 8 7 14 14 H 1.08000 * 119.99880 * 359.97438 * 13 12 8 15 15 C 1.38807 * 120.00195 * 180.02562 * 13 12 8 16 16 N 1.31623 * 120.00098 * 359.72329 * 15 13 12 17 17 Si 1.86803 * 120.00254 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46809 * 269.72499 * 17 15 13 19 19 H 1.48501 * 109.46954 * 29.72111 * 17 15 13 20 20 H 1.48500 * 109.46959 * 149.72470 * 17 15 13 21 21 C 1.50706 * 109.47126 * 239.99763 * 2 1 3 22 22 C 1.38259 * 119.99401 * 174.11027 * 21 2 1 23 23 C 1.38225 * 120.02467 * 179.76826 * 22 21 2 24 24 C 1.38235 * 120.01027 * 0.51353 * 23 22 21 25 25 C 1.38332 * 119.98882 * 359.74221 * 24 23 22 26 26 Cl 1.73599 * 120.01076 * 180.02562 * 25 24 23 27 27 C 1.38199 * 119.99135 * 354.39298 * 21 2 1 28 28 H 1.09000 * 109.47034 * 300.00305 * 1 2 3 29 29 H 1.09002 * 109.47001 * 59.99769 * 1 2 3 30 30 H 1.08995 * 109.47112 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47272 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47286 * 300.00056 * 3 2 1 33 33 H 1.09000 * 109.47330 * 59.99876 * 3 2 1 34 34 H 0.96998 * 119.99976 * 359.97438 * 6 4 2 35 35 H 1.09000 * 109.46745 * 59.99368 * 7 6 4 36 36 H 1.09007 * 109.46750 * 300.00080 * 7 6 4 37 37 H 1.09000 * 109.47092 * 174.99938 * 10 8 7 38 38 H 1.09002 * 109.47615 * 294.99839 * 10 8 7 39 39 H 0.96703 * 114.00362 * 179.97438 * 11 10 8 40 40 H 0.96996 * 119.99600 * 335.00340 * 12 8 7 41 41 H 0.97005 * 119.99448 * 0.28063 * 16 15 13 42 42 H 1.07999 * 119.98768 * 0.02562 * 22 21 2 43 43 H 1.08001 * 119.99130 * 180.25540 * 23 22 21 44 44 H 1.08002 * 120.00261 * 179.76785 * 24 23 22 45 45 H 1.07996 * 120.00455 * 359.94963 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6453 -1.7513 1.1219 6 7 1.8005 -0.1891 2.4514 7 6 2.2893 -0.8794 3.6476 8 6 1.8956 -0.0826 4.8930 9 1 0.8098 -0.0722 4.9895 10 6 2.5114 -0.7356 6.1320 11 8 3.9243 -0.8548 5.9551 12 7 2.3880 1.2916 4.7694 13 6 1.7678 2.3050 5.4503 14 1 0.9153 2.0912 6.0780 15 6 2.2340 3.6071 5.3328 16 7 3.2756 3.8670 4.5713 17 14 1.3884 4.9894 6.2622 18 1 0.3129 5.5683 5.4174 19 1 0.7992 4.4549 7.5161 20 1 2.3808 6.0439 6.5916 21 6 2.0324 -0.7105 -1.2305 22 6 3.3858 -0.7314 -1.5124 23 6 3.8477 -1.3869 -2.6383 24 6 2.9556 -2.0130 -3.4886 25 6 1.6008 -1.9879 -3.2098 26 17 0.4801 -2.7744 -4.2770 27 6 1.1396 -1.3360 -2.0799 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.3106 0.6436 2.5381 35 1 3.3749 -0.9649 3.5995 36 1 1.8483 -1.8749 3.6983 37 1 2.3056 -0.1198 7.0075 38 1 2.0782 -1.7257 6.2743 39 1 4.3817 -1.2611 6.7040 40 1 3.1533 1.4836 4.2053 41 1 3.7149 3.1492 4.0890 42 1 4.0827 -0.2389 -0.8505 43 1 4.9054 -1.4064 -2.8558 44 1 3.3163 -2.5219 -4.3702 45 1 0.0821 -1.3164 -1.8615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734379733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -85.440008 kcal Electronic energy + Delta-G solvation = -27727.771307 eV Core-core repulsion = 23770.147067 eV Total energy + Delta-G solvation = -3957.624240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74084 -39.97826 -38.73105 -37.52866 -36.55107 -36.26073 -35.36727 -33.09363 -31.92208 -30.84131 -29.74207 -28.41770 -26.89700 -25.53379 -24.94103 -23.37292 -22.83343 -21.82509 -20.42964 -19.54856 -18.62509 -18.21111 -17.77654 -17.28141 -16.69922 -16.46625 -16.23711 -15.98540 -15.73580 -15.43936 -15.17733 -14.95273 -14.86086 -14.77728 -14.60923 -14.29684 -13.73923 -13.38153 -13.37427 -13.15450 -13.04088 -12.87119 -12.78659 -12.68890 -12.53573 -12.42977 -12.25148 -12.06594 -11.90791 -11.87511 -11.69503 -11.26512 -11.01774 -10.79280 -10.74843 -10.06822 -9.90764 -9.65199 -9.09125 -8.30579 -5.26130 0.15864 0.26127 1.11017 1.58662 1.62454 1.71833 1.85140 2.16958 2.69379 2.74288 3.33694 3.44751 3.51311 3.65351 3.74517 3.80394 3.92322 3.95090 3.97905 4.11115 4.21140 4.33768 4.43532 4.46491 4.51943 4.61705 4.66579 4.68617 4.74401 4.77527 4.83248 4.90088 4.92990 5.11432 5.13357 5.15196 5.22269 5.34864 5.43962 5.52183 5.65907 5.79278 6.52821 6.55503 6.96001 7.12581 7.19012 8.02178 8.16608 9.19816 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.002737 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.423752 B =10228.520628 C =10982.611712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 C -0.137 4.137 4 C 0.519 3.481 5 O -0.576 6.576 6 N -0.709 5.709 7 C 0.130 3.870 8 C 0.168 3.832 9 H 0.077 0.923 10 C 0.064 3.936 11 O -0.584 6.584 12 N -0.732 5.732 13 C -0.325 4.325 14 H 0.070 0.930 15 C -0.099 4.099 16 N -0.973 5.973 17 Si 1.126 2.874 18 H -0.283 1.283 19 H -0.276 1.276 20 H -0.302 1.302 21 C -0.053 4.053 22 C -0.106 4.106 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.044 4.044 26 Cl -0.069 7.069 27 C -0.112 4.112 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.409 0.591 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.386 0.614 40 H 0.359 0.641 41 H 0.243 0.757 42 H 0.115 0.885 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 -11.446 -12.998 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.194 4.194 4 C 0.306 3.694 5 O -0.456 6.456 6 N -0.360 5.360 7 C 0.005 3.995 8 C 0.058 3.942 9 H 0.094 0.906 10 C -0.017 4.017 11 O -0.391 6.391 12 N -0.374 5.374 13 C -0.456 4.456 14 H 0.088 0.912 15 C -0.291 4.291 16 N -0.621 5.621 17 Si 0.952 3.048 18 H -0.210 1.210 19 H -0.201 1.201 20 H -0.229 1.229 21 C -0.054 4.054 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.071 4.071 26 Cl -0.040 7.040 27 C -0.130 4.130 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.245 0.755 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.234 0.766 40 H 0.191 0.809 41 H 0.054 0.946 42 H 0.133 0.867 43 H 0.171 0.829 44 H 0.170 0.830 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.975 -10.397 -13.255 17.874 hybrid contribution 0.514 -1.520 0.450 1.666 sum -5.461 -11.917 -12.805 18.325 Atomic orbital electron populations 1.21994 0.90040 1.03298 1.04651 1.19692 0.98895 0.95902 0.89346 1.21890 1.01300 0.92297 1.03914 1.20809 0.78808 0.84758 0.85033 1.90663 1.42557 1.25170 1.87216 1.45972 1.57251 1.27444 1.05322 1.21356 0.98854 0.95375 0.83891 1.20751 0.97281 0.84194 0.91939 0.90555 1.22861 0.81379 0.98739 0.98672 1.86499 1.20528 1.85481 1.46591 1.42454 1.36238 1.02478 1.56209 1.20334 1.11666 0.89765 1.23834 0.91163 1.26968 0.99315 1.00667 1.02151 1.70957 1.23432 1.34285 1.33416 0.82623 0.74167 0.73069 0.74919 1.20989 1.20124 1.22886 1.19325 0.93592 0.97924 0.94557 1.21189 0.95159 0.98823 0.97256 1.21333 1.01008 0.96608 0.93651 1.21303 0.90802 1.00074 1.01054 1.20978 0.91334 1.00612 0.94127 1.98359 1.61906 1.79226 1.64493 1.21140 1.01232 0.97416 0.93239 0.90972 0.88790 0.91492 0.92859 0.89213 0.91905 0.75452 0.93237 0.90658 0.94687 0.91659 0.76582 0.80911 0.94627 0.86690 0.82931 0.82963 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 7.11 71.98 0.51 -2.36 16 2 C -0.04 -0.90 0.72 -53.67 -0.04 -0.94 16 3 C -0.14 -3.46 8.07 71.98 0.58 -2.87 16 4 C 0.52 16.95 6.35 87.66 0.56 17.50 16 5 O -0.58 -22.54 15.55 -3.03 -0.05 -22.59 16 6 N -0.71 -23.25 5.22 -463.05 -2.42 -25.67 16 7 C 0.13 4.49 5.12 86.38 0.44 4.93 16 8 C 0.17 6.10 2.84 44.99 0.13 6.22 16 9 H 0.08 2.63 8.08 -2.38 -0.02 2.61 16 10 C 0.06 2.10 6.86 71.98 0.49 2.60 16 11 O -0.58 -20.04 12.64 -148.98 -1.88 -21.92 16 12 N -0.73 -33.78 4.51 -322.96 -1.46 -35.24 16 13 C -0.32 -16.66 9.93 84.03 0.83 -15.82 16 14 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 15 C -0.10 -5.41 5.50 84.86 0.47 -4.94 16 16 N -0.97 -58.37 13.70 21.65 0.30 -58.08 16 17 Si 1.13 49.46 29.92 68.60 2.05 51.52 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 21 C -0.05 -1.36 4.23 -19.87 -0.08 -1.44 16 22 C -0.11 -2.74 8.38 22.27 0.19 -2.55 16 23 C -0.11 -2.28 10.05 22.27 0.22 -2.06 16 24 C -0.11 -2.25 9.83 22.29 0.22 -2.03 16 25 C -0.04 -0.95 6.32 22.32 0.14 -0.81 16 26 Cl -0.07 -1.31 28.96 -2.72 -0.08 -1.39 16 27 C -0.11 -2.55 8.78 22.29 0.20 -2.35 16 28 H 0.07 1.43 7.96 -2.39 -0.02 1.41 16 29 H 0.09 1.49 7.78 -2.39 -0.02 1.48 16 30 H 0.07 1.32 7.25 -2.39 -0.02 1.30 16 31 H 0.05 1.45 7.08 -2.39 -0.02 1.43 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.74 7.27 -2.39 -0.02 1.72 16 34 H 0.41 13.45 7.05 -92.71 -0.65 12.80 16 35 H 0.05 1.98 7.39 -2.39 -0.02 1.96 16 36 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.39 9.28 9.12 -74.06 -0.68 8.61 16 40 H 0.36 18.35 6.63 -92.71 -0.61 17.73 16 41 H 0.24 14.76 6.77 -92.70 -0.63 14.13 16 42 H 0.12 3.13 7.23 -2.91 -0.02 3.11 16 43 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 44 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.15 2.88 5.91 -2.91 -0.02 2.87 16 Total: -1.00 -69.08 383.93 0.56 -68.51 By element: Atomic # 1 Polarization: 52.54 SS G_CDS: -0.76 Total: 51.78 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.86 Total: -6.93 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -3.58 Total: -118.98 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.93 Total: -44.51 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.52 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -69.08 0.56 -68.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734379733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.927 kcal (2) G-P(sol) polarization free energy of solvation -69.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds