Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35133 * 126.44000 * 2 1 4 4 O 1.33936 * 108.76383 * 179.97438 * 3 2 1 5 5 C 1.34909 * 109.38536 * 0.02562 * 4 3 2 6 6 C 1.46661 * 125.98740 * 179.97438 * 5 4 3 7 7 O 1.21700 * 119.99926 * 173.27944 * 6 5 4 8 8 N 1.34780 * 119.99772 * 353.27492 * 6 5 4 9 9 C 1.46500 * 119.99899 * 3.37937 * 8 6 5 10 10 C 1.46500 * 119.99485 * 183.37541 * 8 6 5 11 11 H 1.08992 * 109.47559 * 359.97438 * 10 8 6 12 12 C 1.53004 * 109.46922 * 240.00083 * 10 8 6 13 13 C 1.53002 * 109.47098 * 120.00520 * 10 8 6 14 14 N 1.46501 * 109.46572 * 304.99780 * 13 10 8 15 15 C 1.34776 * 119.99712 * 180.02562 * 14 13 10 16 16 O 1.21283 * 120.00010 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00263 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.47407 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99913 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00042 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99934 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99967 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00153 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46893 * 60.00320 * 23 21 19 25 25 H 1.48495 * 109.47270 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47141 * 300.00695 * 23 21 19 27 27 C 1.36543 * 108.02845 * 359.97438 * 5 4 3 28 28 H 1.08997 * 109.46922 * 270.05541 * 1 2 3 29 29 H 1.08996 * 109.47327 * 30.05265 * 1 2 3 30 30 H 1.08992 * 109.47055 * 150.05514 * 1 2 3 31 31 H 1.07991 * 125.61772 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.47078 * 84.01892 * 9 8 6 33 33 H 1.09003 * 109.46236 * 204.01838 * 9 8 6 34 34 H 1.08997 * 109.46767 * 324.01031 * 9 8 6 35 35 H 1.08995 * 109.47160 * 59.99966 * 12 10 8 36 36 H 1.08995 * 109.47212 * 180.02562 * 12 10 8 37 37 H 1.09001 * 109.46771 * 300.00389 * 12 10 8 38 38 H 1.09001 * 109.46914 * 64.99205 * 13 10 8 39 39 H 1.08994 * 109.47203 * 184.99924 * 13 10 8 40 40 H 0.97001 * 120.00561 * 359.97438 * 14 13 10 41 41 H 1.09005 * 109.47306 * 299.99832 * 17 15 14 42 42 H 1.09001 * 109.47084 * 59.99736 * 17 15 14 43 43 H 0.96992 * 120.00130 * 179.97438 * 22 21 19 44 44 H 1.08000 * 126.64946 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 0.0006 5 6 3.6261 -0.6681 0.0004 6 6 4.8380 -1.4941 0.0003 7 8 4.7512 -2.7017 0.1235 8 7 6.0477 -0.9157 -0.1362 9 6 6.1578 0.5433 -0.2102 10 6 7.2523 -1.7461 -0.2106 11 1 6.9740 -2.7974 -0.1385 12 6 8.1910 -1.3874 0.9431 13 6 7.9626 -1.4962 -1.5425 14 7 7.0262 -1.7251 -2.6457 15 6 7.4341 -1.5642 -3.9201 16 8 8.5761 -1.2294 -4.1536 17 6 6.4711 -1.8003 -5.0550 18 16 7.3113 -1.5045 -6.6307 19 6 5.9926 -1.8438 -7.7490 20 1 5.0241 -2.1343 -7.3696 21 6 6.1983 -1.7366 -9.1175 22 7 7.3786 -1.3820 -9.5799 23 14 4.8005 -2.0970 -10.3031 24 1 3.6730 -1.1683 -10.0360 25 1 5.2747 -1.9124 -11.6982 26 1 4.3428 -3.4975 -10.1176 27 6 2.3409 -1.1292 0.0002 28 1 -0.3633 0.0010 1.0276 29 1 -0.3634 0.8895 -0.5146 30 1 -0.3633 -0.8904 -0.5129 31 1 1.9770 2.1145 -0.0004 32 1 6.1724 0.9581 0.7976 33 1 7.0790 0.8122 -0.7272 34 1 5.3043 0.9448 -0.7563 35 1 7.6850 -1.5653 1.8920 36 1 9.0875 -2.0048 0.8876 37 1 8.4694 -0.3359 0.8715 38 1 8.3193 -0.4667 -1.5765 39 1 8.8084 -2.1771 -1.6366 40 1 6.1129 -1.9932 -2.4590 41 1 6.1144 -2.8297 -5.0207 42 1 5.6252 -1.1193 -4.9613 43 1 7.5224 -1.3075 -10.5362 44 1 2.0267 -2.1625 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734743463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -53.879276 kcal Electronic energy + Delta-G solvation = -27028.284623 eV Core-core repulsion = 23074.072666 eV Total energy + Delta-G solvation = -3954.211957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.08372 -40.34411 -38.98093 -36.93651 -34.70869 -34.03197 -32.41769 -32.20809 -30.63928 -29.39163 -27.66891 -27.33119 -26.01623 -25.37461 -24.15945 -21.47179 -21.06737 -20.32851 -19.59161 -17.85347 -17.79756 -17.22565 -16.85380 -16.57517 -16.25488 -15.88356 -15.22102 -15.05754 -14.79186 -14.28451 -14.07797 -13.91806 -13.58951 -13.55635 -13.50470 -13.38577 -13.20723 -13.03457 -12.92313 -12.66222 -12.54767 -12.31362 -12.16709 -11.99307 -11.76215 -11.25782 -11.03195 -11.02637 -10.75748 -10.54575 -10.05531 -9.81613 -9.42619 -9.17202 -9.05191 -8.89618 -8.87112 -8.23186 -6.48706 -6.20351 -3.90838 0.72925 1.95612 2.23891 2.69276 2.83374 3.04786 3.10446 3.24644 3.28421 3.32520 3.72403 4.08759 4.21907 4.41481 4.44122 4.59220 4.70285 4.80270 4.88406 4.94834 5.14667 5.15393 5.18350 5.23705 5.27208 5.28964 5.34058 5.37466 5.50958 5.54126 5.59064 5.65012 5.72360 5.72814 5.84004 5.90888 6.04497 6.11649 6.16588 6.50946 6.59401 6.90085 7.60768 7.64798 7.69858 8.36578 8.60728 9.24870 10.87083 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009814 B = 0.002960 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.472524 B = 9456.044416 C =11621.631905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.193 4.193 3 C -0.013 4.013 4 O -0.155 6.155 5 C -0.077 4.077 6 C 0.601 3.399 7 O -0.520 6.520 8 N -0.600 5.600 9 C 0.071 3.929 10 C 0.124 3.876 11 H 0.112 0.888 12 C -0.157 4.157 13 C 0.111 3.889 14 N -0.736 5.736 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.058 6.058 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.114 4.114 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.208 0.792 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 5.121 25.807 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.194 4.194 3 C -0.083 4.083 4 O -0.051 6.051 5 C -0.128 4.128 6 C 0.390 3.610 7 O -0.397 6.397 8 N -0.333 5.333 9 C -0.071 4.071 10 C 0.021 3.979 11 H 0.129 0.871 12 C -0.215 4.215 13 C -0.014 4.014 14 N -0.390 5.390 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.135 4.135 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.010 5.262 25.317 26.791 hybrid contribution -2.861 -0.609 -0.413 2.954 sum -9.872 4.653 24.904 27.190 Atomic orbital electron populations 1.20197 0.88597 1.03091 1.02284 1.20504 0.97786 0.92372 1.08754 1.24308 0.80460 1.00125 1.03384 1.84295 1.28652 1.21572 1.70600 1.21892 0.95850 0.80713 1.14365 1.16714 0.81181 0.86250 0.76902 1.90898 1.85554 1.12651 1.50640 1.47807 1.05740 1.08009 1.71702 1.22036 1.04167 0.78541 1.02334 1.21498 0.84414 0.97254 0.94774 0.87052 1.22052 0.99337 1.02706 0.97437 1.21669 0.92735 1.02434 0.84538 1.45934 1.14993 1.72660 1.05455 1.20289 0.88725 0.76133 0.82920 1.90698 1.19493 1.45133 1.83917 1.23531 1.01953 1.04839 1.00089 1.85347 1.17133 1.89925 0.90778 1.22838 0.98442 1.54020 0.93143 0.90998 1.24984 0.96510 0.94634 0.97398 1.70005 1.21623 1.44372 1.14348 0.86226 0.81155 0.78986 0.79158 1.19947 1.20793 1.19911 1.21865 0.90526 1.00650 1.00419 0.91293 0.91344 0.91159 0.77509 0.92124 0.90084 0.89648 0.91663 0.90552 0.91738 0.91102 0.90073 0.76927 0.89236 0.89406 0.92136 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.39 36.01 0.37 -0.11 16 2 C -0.19 -1.57 6.14 -104.92 -0.64 -2.22 16 3 C -0.01 -0.09 12.00 29.63 0.36 0.26 16 4 O -0.16 -1.40 7.29 5.00 0.04 -1.37 16 5 C -0.08 -0.82 6.77 -36.80 -0.25 -1.07 16 6 C 0.60 7.06 7.34 -12.86 -0.09 6.96 16 7 O -0.52 -7.44 16.21 5.19 0.08 -7.35 16 8 N -0.60 -5.85 2.24 -175.48 -0.39 -6.25 16 9 C 0.07 0.57 8.65 59.85 0.52 1.09 16 10 C 0.12 1.16 2.79 -67.93 -0.19 0.97 16 11 H 0.11 1.18 6.90 -51.93 -0.36 0.82 16 12 C -0.16 -1.08 9.19 37.16 0.34 -0.74 16 13 C 0.11 1.28 4.94 -4.04 -0.02 1.26 16 14 N -0.74 -10.59 5.39 -60.30 -0.32 -10.92 16 15 C 0.53 10.26 7.85 -10.99 -0.09 10.18 16 16 O -0.52 -11.82 15.86 5.55 0.09 -11.73 16 17 C -0.15 -3.23 6.16 36.00 0.22 -3.01 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.53 9.50 30.94 0.29 -15.23 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 23 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.11 -1.15 10.58 -39.39 -0.42 -1.57 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.63 6.54 -51.93 -0.34 0.29 16 34 H 0.09 0.74 5.40 -51.93 -0.28 0.46 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 38 H 0.07 0.82 6.87 -51.93 -0.36 0.46 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.40 5.34 7.87 -40.82 -0.32 5.01 16 41 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -36.36 386.19 -7.13 -43.49 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.25 Total: 2.36 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 0.31 Total: -1.19 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.02 Total: -42.82 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.21 Total: -20.45 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.36 -7.13 -43.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734743463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.386 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds