Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35133 * 126.44000 * 2 1 4 4 O 1.33936 * 108.76383 * 179.97438 * 3 2 1 5 5 C 1.34909 * 109.38536 * 0.02562 * 4 3 2 6 6 C 1.46661 * 125.98740 * 179.97438 * 5 4 3 7 7 O 1.21700 * 119.99926 * 173.27944 * 6 5 4 8 8 N 1.34780 * 119.99772 * 353.27492 * 6 5 4 9 9 C 1.46500 * 119.99899 * 3.37937 * 8 6 5 10 10 C 1.46500 * 119.99485 * 183.37541 * 8 6 5 11 11 H 1.08992 * 109.47559 * 359.97438 * 10 8 6 12 12 C 1.53004 * 109.46922 * 240.00083 * 10 8 6 13 13 C 1.53002 * 109.47098 * 120.00520 * 10 8 6 14 14 N 1.46501 * 109.46572 * 304.99780 * 13 10 8 15 15 C 1.34776 * 119.99712 * 180.02562 * 14 13 10 16 16 O 1.21283 * 120.00010 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00263 * 179.97438 * 15 14 13 18 18 S 1.81005 * 109.47407 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99913 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00042 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99934 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99967 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00153 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46893 * 60.00320 * 23 21 19 25 25 H 1.48495 * 109.47270 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47141 * 300.00695 * 23 21 19 27 27 C 1.36543 * 108.02845 * 359.97438 * 5 4 3 28 28 H 1.08997 * 109.46922 * 270.05541 * 1 2 3 29 29 H 1.08996 * 109.47327 * 30.05265 * 1 2 3 30 30 H 1.08992 * 109.47055 * 150.05514 * 1 2 3 31 31 H 1.07991 * 125.61772 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.47078 * 84.01892 * 9 8 6 33 33 H 1.09003 * 109.46236 * 204.01838 * 9 8 6 34 34 H 1.08997 * 109.46767 * 324.01031 * 9 8 6 35 35 H 1.08995 * 109.47160 * 59.99966 * 12 10 8 36 36 H 1.08995 * 109.47212 * 180.02562 * 12 10 8 37 37 H 1.09001 * 109.46771 * 300.00389 * 12 10 8 38 38 H 1.09001 * 109.46914 * 64.99205 * 13 10 8 39 39 H 1.08994 * 109.47203 * 184.99924 * 13 10 8 40 40 H 0.97001 * 120.00561 * 359.97438 * 14 13 10 41 41 H 1.09005 * 109.47306 * 299.99832 * 17 15 14 42 42 H 1.09001 * 109.47084 * 59.99736 * 17 15 14 43 43 H 0.96992 * 120.00130 * 179.97438 * 22 21 19 44 44 H 1.08000 * 126.64946 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 0.0006 5 6 3.6261 -0.6681 0.0004 6 6 4.8380 -1.4941 0.0003 7 8 4.7512 -2.7017 0.1235 8 7 6.0477 -0.9157 -0.1362 9 6 6.1578 0.5433 -0.2102 10 6 7.2523 -1.7461 -0.2106 11 1 6.9740 -2.7974 -0.1385 12 6 8.1910 -1.3874 0.9431 13 6 7.9626 -1.4962 -1.5425 14 7 7.0262 -1.7251 -2.6457 15 6 7.4341 -1.5642 -3.9201 16 8 8.5761 -1.2294 -4.1536 17 6 6.4711 -1.8003 -5.0550 18 16 7.3113 -1.5045 -6.6307 19 6 5.9926 -1.8438 -7.7490 20 1 5.0241 -2.1343 -7.3696 21 6 6.1983 -1.7366 -9.1175 22 7 7.3786 -1.3820 -9.5799 23 14 4.8005 -2.0970 -10.3031 24 1 3.6730 -1.1683 -10.0360 25 1 5.2747 -1.9124 -11.6982 26 1 4.3428 -3.4975 -10.1176 27 6 2.3409 -1.1292 0.0002 28 1 -0.3633 0.0010 1.0276 29 1 -0.3634 0.8895 -0.5146 30 1 -0.3633 -0.8904 -0.5129 31 1 1.9770 2.1145 -0.0004 32 1 6.1724 0.9581 0.7976 33 1 7.0790 0.8122 -0.7272 34 1 5.3043 0.9448 -0.7563 35 1 7.6850 -1.5653 1.8920 36 1 9.0875 -2.0048 0.8876 37 1 8.4694 -0.3359 0.8715 38 1 8.3193 -0.4667 -1.5765 39 1 8.8084 -2.1771 -1.6366 40 1 6.1129 -1.9932 -2.4590 41 1 6.1144 -2.8297 -5.0207 42 1 5.6252 -1.1193 -4.9613 43 1 7.5224 -1.3075 -10.5362 44 1 2.0267 -2.1625 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734743463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -78.586541 kcal Electronic energy + Delta-G solvation = -27029.356010 eV Core-core repulsion = 23074.072666 eV Total energy + Delta-G solvation = -3955.283345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.74865 -41.29689 -40.37192 -37.90034 -35.54512 -35.01548 -34.60421 -33.15004 -31.38683 -30.84831 -28.19176 -28.03582 -27.76058 -26.84661 -24.93763 -22.18450 -21.84944 -21.75947 -20.39897 -19.80748 -18.51604 -18.07249 -17.88262 -17.57350 -17.51882 -16.90138 -16.87499 -16.48936 -16.05117 -15.87164 -15.19073 -14.91709 -14.58611 -14.47020 -14.36098 -14.19120 -14.08001 -13.96132 -13.95201 -13.70810 -13.47652 -13.19476 -13.12573 -12.99260 -12.88158 -12.85469 -12.61941 -12.54955 -12.03253 -11.76523 -11.43735 -11.14873 -11.04279 -10.74168 -10.32983 -10.20600 -9.96112 -9.52549 -8.69229 -8.36466 -6.15014 -0.01305 1.23336 1.32165 1.42567 1.43580 1.49842 1.54173 1.55702 1.96371 2.04152 2.23234 2.26446 2.97428 3.28120 3.38282 3.60878 3.81108 3.87332 3.97478 4.05297 4.11542 4.16640 4.21625 4.31444 4.43708 4.53515 4.59037 4.63814 4.66404 4.73482 4.81335 4.86923 4.94993 4.98417 5.04788 5.11882 5.20911 5.29295 5.39365 5.40965 5.50940 5.83490 6.12252 6.17574 6.33010 6.81553 7.04520 7.12555 8.72583 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009814 B = 0.002960 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.472524 B = 9456.044416 C =11621.631905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.208 4.208 3 C 0.000 4.000 4 O -0.156 6.156 5 C -0.101 4.101 6 C 0.597 3.403 7 O -0.556 6.556 8 N -0.596 5.596 9 C 0.070 3.930 10 C 0.131 3.869 11 H 0.099 0.901 12 C -0.150 4.150 13 C 0.110 3.890 14 N -0.714 5.714 15 C 0.538 3.462 16 O -0.558 6.558 17 C -0.133 4.133 18 S -0.139 6.139 19 C -0.552 4.552 20 H 0.080 0.920 21 C 0.016 3.984 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.264 1.264 27 C -0.126 4.126 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.248 0.752 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.404 0.596 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.272 0.728 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 6.146 26.893 29.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.209 4.209 3 C -0.069 4.069 4 O -0.052 6.052 5 C -0.152 4.152 6 C 0.387 3.613 7 O -0.437 6.437 8 N -0.328 5.328 9 C -0.071 4.071 10 C 0.027 3.973 11 H 0.117 0.883 12 C -0.208 4.208 13 C -0.014 4.014 14 N -0.367 5.367 15 C 0.323 3.677 16 O -0.436 6.436 17 C -0.284 4.284 18 S 0.088 5.912 19 C -0.700 4.700 20 H 0.098 0.902 21 C -0.189 4.189 22 N -0.546 5.546 23 Si 0.819 3.181 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.147 4.147 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.239 0.761 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.900 6.300 26.455 28.614 hybrid contribution -2.315 -0.882 -0.614 2.552 sum -11.215 5.418 25.841 28.686 Atomic orbital electron populations 1.20253 0.86971 1.03677 1.03100 1.20825 0.99031 0.91909 1.09163 1.25136 0.79478 1.01586 1.00703 1.84290 1.29707 1.20612 1.70571 1.21716 0.95544 0.81487 1.16503 1.16895 0.81913 0.85979 0.76523 1.90867 1.86156 1.14111 1.52593 1.47886 1.05278 1.08798 1.70794 1.22154 1.04152 0.77310 1.03521 1.21452 0.84634 0.96726 0.94440 0.88292 1.22018 0.99014 1.03701 0.96068 1.21895 0.92376 1.02875 0.84261 1.45750 1.15752 1.70672 1.04557 1.19939 0.87687 0.76136 0.83900 1.90688 1.20836 1.47432 1.84595 1.23377 1.01995 1.05964 0.97049 1.85458 1.19851 1.90473 0.95431 1.23174 0.98624 1.54303 0.93851 0.90236 1.26110 0.99463 0.93962 0.99373 1.70162 1.24103 1.45389 1.14931 0.85018 0.77433 0.79304 0.76339 1.18605 1.20098 1.18827 1.22074 0.91085 1.01245 1.00250 0.90339 0.89733 0.91619 0.73572 0.90286 0.89636 0.90056 0.91451 0.89406 0.90526 0.90435 0.89960 0.76093 0.87941 0.87797 0.91867 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.39 71.24 0.74 -0.05 16 2 C -0.21 -3.05 6.14 -20.06 -0.12 -3.17 16 3 C 0.00 0.00 12.00 67.10 0.81 0.81 16 4 O -0.16 -2.55 7.29 -5.04 -0.04 -2.58 16 5 C -0.10 -2.11 6.77 24.07 0.16 -1.95 16 6 C 0.60 13.89 7.34 86.44 0.63 14.53 16 7 O -0.56 -16.24 16.21 -4.35 -0.07 -16.31 16 8 N -0.60 -10.98 2.24 -827.32 -1.86 -12.84 16 9 C 0.07 0.99 8.65 127.77 1.11 2.10 16 10 C 0.13 2.30 2.79 44.99 0.13 2.42 16 11 H 0.10 2.06 6.90 -2.39 -0.02 2.04 16 12 C -0.15 -1.77 9.19 71.98 0.66 -1.11 16 13 C 0.11 2.41 4.94 86.38 0.43 2.84 16 14 N -0.71 -19.98 5.39 -463.07 -2.49 -22.48 16 15 C 0.54 20.58 7.85 87.66 0.69 21.27 16 16 O -0.56 -25.73 15.86 -3.04 -0.05 -25.78 16 17 C -0.13 -5.56 6.16 71.23 0.44 -5.13 16 18 S -0.14 -7.86 20.57 -56.49 -1.16 -9.03 16 19 C -0.55 -32.14 9.50 67.95 0.65 -31.50 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.02 0.92 5.49 84.86 0.47 1.38 16 22 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 23 Si 1.00 44.02 29.55 68.60 2.03 46.04 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 C -0.13 -2.51 10.58 22.39 0.24 -2.27 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.25 0.63 8.06 -2.92 -0.02 0.61 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.14 6.54 -2.39 -0.02 1.13 16 34 H 0.08 1.26 5.40 -2.39 -0.01 1.25 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.74 7.67 -2.39 -0.02 0.73 16 38 H 0.08 1.66 6.87 -2.39 -0.02 1.65 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.40 10.50 7.87 -92.71 -0.73 9.77 16 41 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 42 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -80.91 386.19 3.95 -76.95 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.30 Total: 21.70 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 7.01 Total: 0.18 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -4.07 Total: -91.18 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.16 Total: -44.67 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.03 kcal Total: -80.91 3.95 -76.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734743463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.636 kcal (2) G-P(sol) polarization free energy of solvation -80.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds