Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34180 * 125.43531 * 2 1 4 4 C 1.47023 * 105.95266 * 179.97438 * 3 2 1 5 5 C 1.47377 * 127.19399 * 179.97438 * 4 3 2 6 6 O 1.21616 * 119.99684 * 8.17234 * 5 4 3 7 7 N 1.34778 * 120.00002 * 188.17345 * 5 4 3 8 8 C 1.46499 * 120.00067 * 6.46231 * 7 5 4 9 9 C 1.46506 * 119.99737 * 186.46400 * 7 5 4 10 10 H 1.09000 * 109.46822 * 359.97438 * 9 7 5 11 11 C 1.52996 * 109.47019 * 119.99883 * 9 7 5 12 12 C 1.52997 * 109.46836 * 239.99531 * 9 7 5 13 13 N 1.46503 * 109.47090 * 55.00238 * 12 9 7 14 14 C 1.34778 * 120.00310 * 179.97438 * 13 12 9 15 15 O 1.21284 * 119.99320 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00292 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99742 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00477 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99777 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00090 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99859 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47408 * 89.99697 * 22 20 18 24 24 H 1.48506 * 109.46793 * 209.99427 * 22 20 18 25 25 H 1.48496 * 109.46925 * 329.99235 * 22 20 18 26 26 C 1.36417 * 105.61114 * 0.23083 * 4 3 2 27 27 O 1.33652 * 108.40266 * 359.62632 * 26 4 3 28 28 H 1.09003 * 109.47165 * 89.99313 * 1 2 3 29 29 H 1.08999 * 109.47265 * 210.00201 * 1 2 3 30 30 H 1.09008 * 109.47308 * 330.00062 * 1 2 3 31 31 H 1.07993 * 127.02678 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.47223 * 275.89028 * 8 7 5 33 33 H 1.09003 * 109.47050 * 35.88514 * 8 7 5 34 34 H 1.08994 * 109.46947 * 155.88713 * 8 7 5 35 35 H 1.08999 * 109.47128 * 59.99814 * 11 9 7 36 36 H 1.08998 * 109.47106 * 179.97438 * 11 9 7 37 37 H 1.08999 * 109.47163 * 299.99968 * 11 9 7 38 38 H 1.09002 * 109.47086 * 175.00017 * 12 9 7 39 39 H 1.08995 * 109.47306 * 295.00286 * 12 9 7 40 40 H 0.97003 * 119.99772 * 359.97438 * 13 12 9 41 41 H 1.09002 * 109.46965 * 300.00110 * 16 14 13 42 42 H 1.09004 * 109.46845 * 60.00150 * 16 14 13 43 43 H 0.96987 * 120.00202 * 180.02562 * 21 20 18 44 44 H 1.08003 * 125.79635 * 179.75357 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8377 2.6178 0.1492 7 7 6.1003 0.8172 -0.1649 8 6 6.1707 -0.6106 -0.4851 9 6 7.3319 1.5981 -0.0244 10 1 7.0814 2.6321 0.2125 11 6 8.1839 1.0085 1.1014 12 6 8.1176 1.5517 -1.3364 13 7 7.2608 2.0049 -2.4349 14 6 7.7439 2.0487 -3.6924 15 8 8.8882 1.7133 -3.9143 16 6 6.8628 2.5153 -4.8223 17 16 7.7927 2.4618 -6.3743 18 6 6.5583 3.0401 -7.4907 19 1 5.5766 3.3000 -7.1230 20 6 6.8478 3.1627 -8.8426 21 7 5.9258 3.5952 -9.6766 22 14 8.5460 2.7139 -9.4785 23 1 8.5691 1.2784 -9.8578 24 1 8.8650 3.5451 -10.6671 25 1 9.5537 2.9616 -8.4163 26 6 3.5789 -0.7581 -0.0043 27 8 2.2852 -1.0935 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.9595 2.1230 0.0004 32 1 6.1100 -1.1926 0.4346 33 1 5.3408 -0.8776 -1.1394 34 1 7.1136 -0.8239 -0.9886 35 1 8.4343 -0.0255 0.8641 36 1 9.1004 1.5891 1.2056 37 1 7.6241 1.0414 2.0361 38 1 8.9881 2.2036 -1.2618 39 1 8.4444 0.5298 -1.5283 40 1 6.3458 2.2734 -2.2573 41 1 5.9923 1.8636 -4.8972 42 1 6.5361 3.5373 -4.6300 43 1 6.1280 3.6805 -10.6214 44 1 4.4103 -1.4476 -0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734744999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -44.171177 kcal Electronic energy + Delta-G solvation = -26932.958757 eV Core-core repulsion = 22979.167775 eV Total energy + Delta-G solvation = -3953.790983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.95261 -40.41133 -39.06316 -36.85387 -34.50708 -33.42523 -32.85227 -32.42290 -31.35245 -29.52612 -27.91023 -26.88192 -26.05895 -25.52771 -24.23836 -21.49657 -21.01152 -20.43047 -19.77358 -17.88586 -17.49649 -17.10523 -16.75968 -16.59565 -16.38833 -15.91840 -15.37811 -15.15974 -14.94704 -14.63980 -13.96256 -13.84123 -13.62477 -13.55927 -13.53149 -13.39950 -13.26426 -13.15294 -13.01164 -12.78434 -12.76818 -12.40913 -12.29467 -11.98833 -11.88164 -11.30943 -11.25247 -11.00014 -10.59308 -10.28953 -10.09167 -9.85019 -9.54177 -9.12685 -9.01461 -8.95690 -8.92878 -8.49097 -6.90387 -6.27409 -3.99058 0.98375 1.69984 2.35699 2.58315 2.78599 2.98189 3.00226 3.31752 3.34995 3.51244 3.67357 4.07620 4.18560 4.34205 4.40070 4.48660 4.57086 4.64595 4.76838 4.84130 4.90805 4.93239 5.03850 5.07831 5.11462 5.15727 5.23063 5.25110 5.26820 5.34311 5.41984 5.55805 5.60127 5.64807 5.77182 5.79784 6.00112 6.04910 6.12807 6.52241 6.65416 6.93209 7.60845 7.82425 7.95822 8.43866 8.48971 9.18612 10.81960 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.002769 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.220754 B =10111.229080 C =11891.895806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.163 4.163 4 C -0.231 4.231 5 C 0.587 3.413 6 O -0.531 6.531 7 N -0.607 5.607 8 C 0.057 3.943 9 C 0.125 3.875 10 H 0.111 0.889 11 C -0.157 4.157 12 C 0.112 3.888 13 N -0.733 5.733 14 C 0.532 3.468 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.003 3.997 27 O -0.174 6.174 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 -11.123 26.437 29.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.182 4.182 4 C -0.235 4.235 5 C 0.377 3.623 6 O -0.408 6.408 7 N -0.341 5.341 8 C -0.086 4.086 9 C 0.022 3.978 10 H 0.129 0.871 11 C -0.216 4.216 12 C -0.013 4.013 13 N -0.388 5.388 14 C 0.318 3.682 15 O -0.396 6.396 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.066 4.066 27 O -0.070 6.070 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.177 0.823 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.235 0.765 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.238 -11.264 25.961 28.615 hybrid contribution -1.034 0.458 -0.231 1.154 sum -5.272 -10.806 25.730 28.401 Atomic orbital electron populations 1.20358 0.84592 1.04224 1.03976 1.22373 0.94262 0.83626 1.05963 1.22495 0.89814 0.99829 1.06066 1.21400 0.94537 0.93311 1.14278 1.17368 0.82055 0.86820 0.76023 1.90811 1.86451 1.13885 1.49681 1.47705 1.05493 1.10210 1.70703 1.22314 1.04697 0.80932 1.00624 1.21435 0.83703 0.97952 0.94729 0.87092 1.22062 1.00038 1.01778 0.97697 1.21668 0.93687 1.00900 0.85088 1.45906 1.16535 1.69481 1.06830 1.20264 0.87947 0.77040 0.82980 1.90692 1.18393 1.47063 1.83475 1.23273 1.02095 1.04763 0.97321 1.84727 1.20980 1.87658 0.98091 1.22328 0.99634 1.50816 0.94080 0.89409 1.24718 0.97507 0.93464 0.95635 1.69938 1.33544 1.44371 1.03880 0.86729 0.85115 0.79491 0.80477 1.19230 1.19943 1.15910 1.25590 0.84296 0.96023 1.00730 1.83771 1.16625 1.35624 1.70934 0.89707 0.90385 0.89105 0.82290 0.91846 0.90038 0.89608 0.91810 0.90628 0.91678 0.90210 0.91190 0.76520 0.88681 0.88471 0.91951 0.75853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.40 36.01 0.37 -0.01 16 2 C -0.01 -0.12 7.28 -35.74 -0.26 -0.38 16 3 C -0.16 -1.65 10.91 -37.45 -0.41 -2.06 16 4 C -0.23 -2.36 6.12 -103.28 -0.63 -3.00 16 5 C 0.59 6.72 7.36 -12.54 -0.09 6.63 16 6 O -0.53 -7.91 16.34 5.26 0.09 -7.82 16 7 N -0.61 -5.27 2.24 -175.22 -0.39 -5.66 16 8 C 0.06 0.32 7.70 59.85 0.46 0.78 16 9 C 0.12 1.09 2.79 -67.93 -0.19 0.90 16 10 H 0.11 1.16 6.92 -51.93 -0.36 0.80 16 11 C -0.16 -0.96 9.19 37.16 0.34 -0.62 16 12 C 0.11 1.20 4.94 -4.04 -0.02 1.18 16 13 N -0.73 -10.09 5.39 -60.30 -0.32 -10.42 16 14 C 0.53 9.74 7.85 -10.99 -0.09 9.65 16 15 O -0.52 -11.25 15.86 5.55 0.09 -11.16 16 16 C -0.12 -2.52 6.16 36.00 0.22 -2.29 16 17 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 18 C -0.52 -15.29 10.04 30.94 0.31 -14.98 16 19 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.90 13.97 55.49 0.78 -26.13 16 22 Si 0.86 21.99 27.74 -169.99 -4.72 17.28 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 26 C 0.00 0.02 10.05 30.08 0.30 0.33 16 27 O -0.17 -1.53 10.52 7.66 0.08 -1.45 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.06 0.20 7.32 -51.93 -0.38 -0.18 16 33 H 0.08 0.45 5.47 -51.93 -0.28 0.16 16 34 H 0.09 0.48 6.54 -51.93 -0.34 0.14 16 35 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.73 6.86 -51.93 -0.36 0.37 16 40 H 0.40 5.30 7.87 -40.82 -0.32 4.98 16 41 H 0.09 1.82 8.14 -51.92 -0.42 1.39 16 42 H 0.10 1.89 8.14 -51.91 -0.42 1.47 16 43 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.23 0.91 4.49 -52.48 -0.24 0.67 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -37.57 380.51 -6.49 -44.06 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.06 Total: 2.32 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 0.23 Total: -1.12 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.06 Total: -42.20 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.25 Total: -20.43 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.57 -6.49 -44.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734744999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.113 kcal (2) G-P(sol) polarization free energy of solvation -37.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds