Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34180 * 125.43531 * 2 1 4 4 C 1.47023 * 105.95266 * 179.97438 * 3 2 1 5 5 C 1.47377 * 127.19399 * 179.97438 * 4 3 2 6 6 O 1.21616 * 119.99684 * 8.17234 * 5 4 3 7 7 N 1.34778 * 120.00002 * 188.17345 * 5 4 3 8 8 C 1.46499 * 120.00067 * 6.46231 * 7 5 4 9 9 C 1.46506 * 119.99737 * 186.46400 * 7 5 4 10 10 H 1.09000 * 109.46822 * 359.97438 * 9 7 5 11 11 C 1.52996 * 109.47019 * 119.99883 * 9 7 5 12 12 C 1.52997 * 109.46836 * 239.99531 * 9 7 5 13 13 N 1.46503 * 109.47090 * 55.00238 * 12 9 7 14 14 C 1.34778 * 120.00310 * 179.97438 * 13 12 9 15 15 O 1.21284 * 119.99320 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00292 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99742 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00477 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99777 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00090 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99859 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47408 * 89.99697 * 22 20 18 24 24 H 1.48506 * 109.46793 * 209.99427 * 22 20 18 25 25 H 1.48496 * 109.46925 * 329.99235 * 22 20 18 26 26 C 1.36417 * 105.61114 * 0.23083 * 4 3 2 27 27 O 1.33652 * 108.40266 * 359.62632 * 26 4 3 28 28 H 1.09003 * 109.47165 * 89.99313 * 1 2 3 29 29 H 1.08999 * 109.47265 * 210.00201 * 1 2 3 30 30 H 1.09008 * 109.47308 * 330.00062 * 1 2 3 31 31 H 1.07993 * 127.02678 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.47223 * 275.89028 * 8 7 5 33 33 H 1.09003 * 109.47050 * 35.88514 * 8 7 5 34 34 H 1.08994 * 109.46947 * 155.88713 * 8 7 5 35 35 H 1.08999 * 109.47128 * 59.99814 * 11 9 7 36 36 H 1.08998 * 109.47106 * 179.97438 * 11 9 7 37 37 H 1.08999 * 109.47163 * 299.99968 * 11 9 7 38 38 H 1.09002 * 109.47086 * 175.00017 * 12 9 7 39 39 H 1.08995 * 109.47306 * 295.00286 * 12 9 7 40 40 H 0.97003 * 119.99772 * 359.97438 * 13 12 9 41 41 H 1.09002 * 109.46965 * 300.00110 * 16 14 13 42 42 H 1.09004 * 109.46845 * 60.00150 * 16 14 13 43 43 H 0.96987 * 120.00202 * 180.02562 * 21 20 18 44 44 H 1.08003 * 125.79635 * 179.75357 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8377 2.6178 0.1492 7 7 6.1003 0.8172 -0.1649 8 6 6.1707 -0.6106 -0.4851 9 6 7.3319 1.5981 -0.0244 10 1 7.0814 2.6321 0.2125 11 6 8.1839 1.0085 1.1014 12 6 8.1176 1.5517 -1.3364 13 7 7.2608 2.0049 -2.4349 14 6 7.7439 2.0487 -3.6924 15 8 8.8882 1.7133 -3.9143 16 6 6.8628 2.5153 -4.8223 17 16 7.7927 2.4618 -6.3743 18 6 6.5583 3.0401 -7.4907 19 1 5.5766 3.3000 -7.1230 20 6 6.8478 3.1627 -8.8426 21 7 5.9258 3.5952 -9.6766 22 14 8.5460 2.7139 -9.4785 23 1 8.5691 1.2784 -9.8578 24 1 8.8650 3.5451 -10.6671 25 1 9.5537 2.9616 -8.4163 26 6 3.5789 -0.7581 -0.0043 27 8 2.2852 -1.0935 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.9595 2.1230 0.0004 32 1 6.1100 -1.1926 0.4346 33 1 5.3408 -0.8776 -1.1394 34 1 7.1136 -0.8239 -0.9886 35 1 8.4343 -0.0255 0.8641 36 1 9.1004 1.5891 1.2056 37 1 7.6241 1.0414 2.0361 38 1 8.9881 2.2036 -1.2618 39 1 8.4444 0.5298 -1.5283 40 1 6.3458 2.2734 -2.2573 41 1 5.9923 1.8636 -4.8972 42 1 6.5361 3.5373 -4.6300 43 1 6.1280 3.6805 -10.6214 44 1 4.4103 -1.4476 -0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734744999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -70.750426 kcal Electronic energy + Delta-G solvation = -26934.111320 eV Core-core repulsion = 22979.167775 eV Total energy + Delta-G solvation = -3954.943545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.61636 -41.31092 -40.38597 -37.76741 -35.54525 -34.69823 -34.17909 -33.60698 -32.08429 -30.93789 -28.47300 -27.92549 -27.45098 -26.87512 -24.98446 -22.21616 -21.82381 -21.70763 -20.51930 -19.87275 -18.16725 -18.00189 -17.84676 -17.64320 -17.35705 -17.11904 -16.85984 -16.47757 -16.20657 -15.75715 -15.36895 -15.01946 -14.82795 -14.63740 -14.29811 -14.08976 -14.05273 -13.96496 -13.92022 -13.79537 -13.55647 -13.36468 -13.19431 -13.01579 -12.95950 -12.88866 -12.62468 -12.53297 -12.00049 -11.87999 -11.18962 -11.17115 -11.09119 -10.84335 -10.59369 -10.21293 -9.83963 -9.56416 -9.02940 -8.53579 -6.25418 0.30279 0.94844 0.99394 1.30473 1.44706 1.48802 1.53457 1.69728 1.97144 2.18671 2.21707 2.24678 2.67488 2.84371 3.39499 3.62051 3.62370 3.76943 3.88655 4.00840 4.06792 4.13005 4.19661 4.36090 4.38978 4.47806 4.53014 4.55289 4.63094 4.70905 4.72078 4.75888 4.82857 4.86869 4.99166 5.08757 5.22164 5.31839 5.37030 5.47820 5.68193 5.99814 6.08700 6.20935 6.30136 6.90712 7.02078 7.07258 8.59256 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.002769 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.220754 B =10111.229080 C =11891.895806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.010 4.010 3 C -0.196 4.196 4 C -0.263 4.263 5 C 0.583 3.417 6 O -0.580 6.580 7 N -0.601 5.601 8 C 0.044 3.956 9 C 0.131 3.869 10 H 0.090 0.910 11 C -0.149 4.149 12 C 0.110 3.890 13 N -0.714 5.714 14 C 0.539 3.461 15 O -0.555 6.555 16 C -0.115 4.115 17 S -0.162 6.162 18 C -0.534 4.534 19 H 0.057 0.943 20 C 0.045 3.955 21 N -0.918 5.918 22 Si 0.918 3.082 23 H -0.259 1.259 24 H -0.258 1.258 25 H -0.236 1.236 26 C 0.027 3.973 27 O -0.178 6.178 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.405 0.595 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.278 0.722 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 -13.457 27.843 31.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C -0.216 4.216 4 C -0.267 4.267 5 C 0.374 3.626 6 O -0.461 6.461 7 N -0.333 5.333 8 C -0.097 4.097 9 C 0.028 3.972 10 H 0.108 0.892 11 C -0.207 4.207 12 C -0.014 4.014 13 N -0.366 5.366 14 C 0.324 3.676 15 O -0.433 6.433 16 C -0.266 4.266 17 S 0.065 5.935 18 C -0.682 4.682 19 H 0.075 0.925 20 C -0.161 4.161 21 N -0.555 5.555 22 Si 0.739 3.261 23 H -0.183 1.183 24 H -0.182 1.182 25 H -0.159 1.159 26 C -0.043 4.043 27 O -0.074 6.074 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.168 0.832 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.240 0.760 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.087 0.913 44 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -3.323 -13.629 27.403 30.785 hybrid contribution -1.429 1.164 -0.539 1.920 sum -4.752 -12.465 26.864 29.994 Atomic orbital electron populations 1.20523 0.82359 1.05517 1.04784 1.22875 0.95528 0.83023 1.04471 1.22632 0.90689 1.00175 1.08062 1.21455 0.94080 0.94509 1.16657 1.17609 0.83052 0.86370 0.75519 1.90778 1.87165 1.15869 1.52287 1.47765 1.04581 1.11442 1.69519 1.22628 1.05224 0.79234 1.02578 1.21373 0.83881 0.97481 0.94486 0.89187 1.22018 0.99680 1.02744 0.96295 1.21923 0.93425 1.01419 0.84632 1.45775 1.16963 1.67796 1.06077 1.19804 0.87013 0.77014 0.83729 1.90683 1.19463 1.49064 1.84063 1.23272 1.02184 1.05799 0.95358 1.84546 1.21135 1.87423 1.00420 1.22472 0.99435 1.50918 0.95329 0.92460 1.25618 1.01323 0.93269 0.95845 1.70020 1.35627 1.45316 1.04582 0.85825 0.80289 0.79783 0.80211 1.18350 1.18244 1.15939 1.26223 0.84656 0.95519 0.97868 1.83806 1.17112 1.35697 1.70786 0.89020 0.88920 0.87998 0.83177 0.88388 0.89701 0.88936 0.89971 0.89797 0.91518 0.90231 0.89859 0.76023 0.87454 0.87811 0.91275 0.72316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.40 71.24 0.74 0.07 16 2 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 3 C -0.20 -4.07 10.91 23.65 0.26 -3.81 16 4 C -0.26 -5.24 6.12 -18.99 -0.12 -5.36 16 5 C 0.58 13.21 7.36 86.65 0.64 13.85 16 6 O -0.58 -17.97 16.34 -4.08 -0.07 -18.03 16 7 N -0.60 -9.36 2.24 -826.52 -1.85 -11.22 16 8 C 0.04 0.35 7.70 127.77 0.98 1.34 16 9 C 0.13 2.08 2.79 44.99 0.13 2.20 16 10 H 0.09 1.87 6.92 -2.39 -0.02 1.85 16 11 C -0.15 -1.40 9.19 71.98 0.66 -0.74 16 12 C 0.11 2.16 4.94 86.38 0.43 2.59 16 13 N -0.71 -18.77 5.39 -463.06 -2.49 -21.27 16 14 C 0.54 19.19 7.85 87.65 0.69 19.88 16 15 O -0.55 -23.32 15.86 -3.04 -0.05 -23.37 16 16 C -0.12 -4.64 6.16 71.23 0.44 -4.20 16 17 S -0.16 -8.33 18.55 -56.49 -1.05 -9.38 16 18 C -0.53 -31.88 10.04 67.96 0.68 -31.19 16 19 H 0.06 3.65 8.03 -2.91 -0.02 3.62 16 20 C 0.04 2.67 5.50 84.86 0.47 3.14 16 21 N -0.92 -56.71 13.97 21.65 0.30 -56.41 16 22 Si 0.92 45.25 27.74 68.60 1.90 47.15 16 23 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 26 C 0.03 0.35 10.05 67.39 0.68 1.03 16 27 O -0.18 -2.80 10.52 4.50 0.05 -2.75 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.10 0.16 7.32 -2.38 -0.02 0.14 16 33 H 0.08 0.65 5.47 -2.39 -0.01 0.64 16 34 H 0.09 0.68 6.54 -2.39 -0.02 0.66 16 35 H 0.08 0.50 7.67 -2.39 -0.02 0.48 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.49 6.86 -2.39 -0.02 1.48 16 40 H 0.40 10.40 7.87 -92.71 -0.73 9.67 16 41 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 42 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 43 H 0.28 15.80 8.31 -92.72 -0.77 15.03 16 44 H 0.26 1.09 4.49 -2.91 -0.01 1.08 16 Total: -1.00 -83.38 380.51 3.86 -79.52 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.27 Total: 16.96 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 6.85 Total: -1.21 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -4.05 Total: -88.89 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.07 Total: -44.16 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.05 Total: -9.38 kcal Total: -83.38 3.86 -79.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734744999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.772 kcal (2) G-P(sol) polarization free energy of solvation -83.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds