Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34178 * 127.02324 * 2 1 4 4 O 1.34217 * 109.12462 * 179.97438 * 3 2 1 5 5 C 1.33660 * 110.90552 * 359.76049 * 4 3 2 6 6 C 1.36417 * 108.39617 * 0.38897 * 5 4 3 7 7 C 1.47382 * 127.18781 * 179.89276 * 6 5 4 8 8 O 1.21612 * 119.99664 * 179.68284 * 7 6 5 9 9 N 1.34779 * 120.00123 * 359.68724 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.47142 * 294.99240 * 11 10 9 13 13 C 1.53002 * 109.46776 * 174.99842 * 11 10 9 14 14 N 1.46496 * 109.47449 * 54.99576 * 11 10 9 15 15 C 1.46502 * 119.99746 * 60.00351 * 14 11 10 16 16 C 1.34775 * 120.00119 * 240.00029 * 14 11 10 17 17 O 1.21278 * 120.00293 * 359.97438 * 16 14 11 18 18 C 1.50705 * 119.99839 * 180.02562 * 16 14 11 19 19 S 1.81002 * 109.46951 * 180.02562 * 18 16 14 20 20 C 1.76201 * 99.99676 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00463 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99672 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00266 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99990 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47273 * 89.99690 * 24 22 20 26 26 H 1.48506 * 109.47150 * 209.99777 * 24 22 20 27 27 H 1.48505 * 109.47194 * 329.99802 * 24 22 20 28 28 H 1.09000 * 109.46755 * 270.02319 * 1 2 3 29 29 H 1.09002 * 109.47338 * 30.02389 * 1 2 3 30 30 H 1.08998 * 109.46993 * 150.02639 * 1 2 3 31 31 H 1.07998 * 125.43809 * 359.97438 * 3 2 1 32 32 H 1.08002 * 125.79659 * 180.26922 * 5 4 3 33 33 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 35 35 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 36 36 H 1.09000 * 109.47312 * 60.00037 * 13 11 10 37 37 H 1.09004 * 109.46964 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47359 * 299.99610 * 13 11 10 39 39 H 1.08992 * 109.47467 * 89.99804 * 15 14 11 40 40 H 1.08998 * 109.47217 * 210.00148 * 15 14 11 41 41 H 1.09000 * 109.47078 * 329.99354 * 15 14 11 42 42 H 1.08994 * 109.46670 * 299.99876 * 18 16 14 43 43 H 1.08996 * 109.47004 * 59.99920 * 18 16 14 44 44 H 0.96996 * 120.00452 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6760 0.0062 6 6 2.3922 -1.1738 0.0007 7 6 1.9913 -2.5921 0.0017 8 8 0.8124 -2.8907 0.0020 9 7 2.9312 -3.5581 0.0022 10 6 2.5327 -4.9678 0.0026 11 6 3.7820 -5.8509 0.0039 12 1 4.3300 -5.7065 -0.9273 13 6 3.3689 -7.3187 0.1301 14 7 4.6374 -5.4853 1.1356 15 6 4.1267 -5.5929 2.5045 16 6 5.8942 -5.0501 0.9174 17 8 6.3172 -4.9616 -0.2157 18 6 6.7743 -4.6746 2.0817 19 16 8.3884 -4.1327 1.4677 20 6 9.1887 -3.7655 2.9939 21 1 8.6618 -3.9024 3.9266 22 6 10.4960 -3.2991 2.9973 23 7 11.1380 -3.1316 1.8605 24 14 11.3447 -2.9104 4.6153 25 1 12.0392 -4.1244 5.1142 26 1 12.3354 -1.8240 4.4062 27 1 10.3341 -2.4735 5.6120 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9895 2.1010 -0.0004 32 1 4.5702 -1.2608 0.0119 33 1 3.8715 -3.3198 0.0016 34 1 1.9395 -5.1780 -0.8874 35 1 1.9392 -5.1773 0.8926 36 1 2.7325 -7.5907 -0.7120 37 1 4.2589 -7.9480 0.1305 38 1 2.8210 -7.4632 1.0611 39 1 4.3440 -6.5865 2.8963 40 1 4.6072 -4.8419 3.1316 41 1 3.0489 -5.4302 2.5040 42 1 6.3086 -3.8643 2.6426 43 1 6.9042 -5.5392 2.7326 44 1 12.0517 -2.8060 1.8629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734798250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -59.790134 kcal Electronic energy + Delta-G solvation = -27242.254904 eV Core-core repulsion = 23287.786633 eV Total energy + Delta-G solvation = -3954.468271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.69824 -40.18692 -39.15604 -36.57405 -34.35269 -33.95497 -32.48560 -32.30671 -30.65587 -28.81913 -27.37297 -26.93928 -26.63461 -25.54283 -23.41345 -21.79663 -20.62130 -20.21388 -19.20544 -18.14794 -17.80145 -17.04420 -16.34918 -16.31084 -16.15548 -15.66822 -15.39233 -14.98933 -14.85428 -14.78196 -14.17737 -13.71892 -13.57006 -13.41467 -13.31130 -13.18750 -13.10954 -12.95083 -12.66309 -12.60745 -12.43839 -12.26532 -12.13403 -11.86709 -11.66384 -11.16921 -11.10455 -11.07355 -10.80432 -10.11525 -9.86659 -9.71559 -9.50879 -9.20838 -9.12020 -8.83801 -8.70464 -8.31136 -6.57722 -6.27438 -3.98872 1.21411 1.86679 2.74440 2.80595 2.87612 3.03365 3.18576 3.21876 3.24743 3.26601 3.51564 4.14743 4.37733 4.43846 4.46553 4.74284 4.86153 4.97655 4.98893 5.05181 5.08157 5.10596 5.27051 5.30759 5.35678 5.45963 5.46607 5.51419 5.54200 5.65934 5.70001 5.76081 5.78919 5.85818 5.88142 5.95028 6.04949 6.22399 6.29307 6.52703 6.81165 7.33866 7.38016 7.54287 8.08547 8.29471 8.38761 9.18320 10.79857 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.003285 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.306796 B = 8521.962698 C =10606.076939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.134 4.134 3 C -0.049 4.049 4 O -0.167 6.167 5 C 0.035 3.965 6 C -0.242 4.242 7 C 0.590 3.410 8 O -0.540 6.540 9 N -0.722 5.722 10 C 0.113 3.887 11 C 0.122 3.878 12 H 0.110 0.890 13 C -0.156 4.156 14 N -0.619 5.619 15 C 0.078 3.922 16 C 0.531 3.469 17 O -0.516 6.516 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.207 0.793 32 H 0.213 0.787 33 H 0.403 0.597 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.349 0.678 -1.821 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C -0.114 4.114 4 O -0.062 6.062 5 C -0.036 4.036 6 C -0.247 4.247 7 C 0.379 3.621 8 O -0.419 6.419 9 N -0.374 5.374 10 C -0.011 4.011 11 C 0.018 3.982 12 H 0.128 0.872 13 C -0.215 4.215 14 N -0.356 5.356 15 C -0.065 4.065 16 C 0.319 3.681 17 O -0.390 6.390 18 C -0.302 4.302 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.223 0.777 32 H 0.229 0.771 33 H 0.238 0.762 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.167 0.836 -3.589 20.501 hybrid contribution 0.493 0.064 2.524 2.572 sum -19.674 0.899 -1.065 19.723 Atomic orbital electron populations 1.20210 0.88416 1.03044 1.02442 1.21380 0.97163 0.90350 1.04733 1.23734 0.79804 0.99711 1.08197 1.83833 1.29518 1.22347 1.70480 1.24622 0.98999 0.81169 0.98771 1.21361 0.93370 0.94144 1.15824 1.17225 0.85346 0.83750 0.75813 1.90742 1.17270 1.83419 1.50459 1.45788 1.09921 1.06039 1.75626 1.21746 0.96660 0.79816 1.02904 1.21308 0.90610 0.94187 0.92060 0.87213 1.22037 1.02307 0.94565 1.02567 1.47969 1.13369 1.67414 1.06828 1.21758 0.99971 1.02204 0.82586 1.20451 0.80893 0.75896 0.90833 1.90709 1.72433 1.52049 1.23805 1.23580 1.02914 1.04373 0.99371 1.85374 1.01793 1.84393 1.11769 1.22843 1.01216 1.51499 0.92880 0.90951 1.24980 0.96255 0.94781 0.97454 1.70005 1.11915 1.42925 1.25359 0.86182 0.79111 0.78232 0.82073 1.20257 1.20719 1.19675 0.91320 0.91819 0.90059 0.77676 0.77072 0.76229 0.90267 0.90994 0.91174 0.91396 0.92021 0.92514 0.90597 0.91268 0.89245 0.89168 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.00 36.01 0.36 -0.46 16 2 C -0.13 -1.53 6.37 -102.49 -0.65 -2.18 16 3 C -0.05 -0.47 11.96 29.30 0.35 -0.12 16 4 O -0.17 -1.94 10.52 7.63 0.08 -1.86 16 5 C 0.04 0.40 11.61 30.08 0.35 0.75 16 6 C -0.24 -3.05 6.31 -103.28 -0.65 -3.70 16 7 C 0.59 7.92 7.81 -12.54 -0.10 7.82 16 8 O -0.54 -8.48 15.41 5.27 0.08 -8.40 16 9 N -0.72 -8.41 5.38 -61.40 -0.33 -8.74 16 10 C 0.11 1.15 4.92 -4.04 -0.02 1.13 16 11 C 0.12 1.28 2.80 -67.93 -0.19 1.09 16 12 H 0.11 1.37 6.90 -51.92 -0.36 1.01 16 13 C -0.16 -1.30 9.19 37.16 0.34 -0.95 16 14 N -0.62 -7.49 2.24 -173.93 -0.39 -7.88 16 15 C 0.08 0.75 9.30 59.85 0.56 1.30 16 16 C 0.53 8.85 7.40 -10.98 -0.08 8.77 16 17 O -0.52 -10.36 15.19 5.56 0.08 -10.28 16 18 C -0.15 -2.83 4.71 36.01 0.17 -2.66 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -14.70 9.50 30.94 0.29 -14.40 16 21 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.41 13.22 55.49 0.73 -24.68 16 24 Si 0.92 20.88 29.55 -169.99 -5.02 15.85 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.94 6.91 -51.93 -0.36 0.58 16 31 H 0.21 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.21 2.07 7.47 -52.49 -0.39 1.68 16 33 H 0.40 4.76 6.84 -40.82 -0.28 4.48 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.71 6.88 -51.93 -0.36 0.35 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 41 H 0.07 0.56 6.53 -51.93 -0.34 0.22 16 42 H 0.09 1.53 7.40 -51.92 -0.38 1.14 16 43 H 0.09 1.60 8.11 -51.92 -0.42 1.17 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -34.90 384.98 -6.67 -41.57 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.13 Total: 3.99 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 0.63 Total: -1.64 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.01 Total: -41.29 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.25 Total: -20.54 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.90 -6.67 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734798250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.217 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds