Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35126 * 126.44489 * 2 1 4 4 O 1.33929 * 108.77042 * 179.75723 * 3 2 1 5 5 C 1.34919 * 109.38437 * 0.40114 * 4 3 2 6 6 C 1.46654 * 125.99066 * 179.86607 * 5 4 3 7 7 O 1.21688 * 120.00204 * 179.69111 * 6 5 4 8 8 N 1.34782 * 119.99811 * 359.68930 * 6 5 4 9 9 C 1.46499 * 120.00273 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47658 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47103 * 64.99700 * 10 9 8 12 12 C 1.52997 * 109.47482 * 184.99947 * 10 9 8 13 13 N 1.46497 * 109.47081 * 305.00223 * 10 9 8 14 14 C 1.46509 * 119.99920 * 299.99669 * 13 10 9 15 15 C 1.34776 * 120.00710 * 119.99844 * 13 10 9 16 16 O 1.21283 * 119.99682 * 359.97438 * 15 13 10 17 17 C 1.50699 * 120.00475 * 180.02562 * 15 13 10 18 18 S 1.81005 * 109.47092 * 179.97438 * 17 15 13 19 19 C 1.76195 * 99.99759 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00208 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99923 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00123 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99880 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47269 * 60.00248 * 23 21 19 25 25 H 1.48509 * 109.46939 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47175 * 299.99922 * 23 21 19 27 27 C 1.36543 * 108.02147 * 359.59854 * 5 4 3 28 28 H 1.09003 * 109.47434 * 269.99878 * 1 2 3 29 29 H 1.09000 * 109.47394 * 29.99943 * 1 2 3 30 30 H 1.08998 * 109.47058 * 150.00164 * 1 2 3 31 31 H 1.07997 * 125.61308 * 359.96205 * 3 2 1 32 32 H 0.97002 * 119.99790 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.46952 * 59.99319 * 9 8 6 34 34 H 1.09004 * 109.46722 * 300.00399 * 9 8 6 35 35 H 1.09002 * 109.47153 * 59.99783 * 12 10 9 36 36 H 1.09001 * 109.46832 * 299.99974 * 12 10 9 37 37 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 38 38 H 1.09003 * 109.46975 * 89.99812 * 14 13 10 39 39 H 1.08995 * 109.47277 * 209.99863 * 14 13 10 40 40 H 1.09003 * 109.46743 * 330.00349 * 14 13 10 41 41 H 1.08994 * 109.46908 * 299.99876 * 17 15 13 42 42 H 1.09006 * 109.46757 * 60.00028 * 17 15 13 43 43 H 0.97000 * 120.00475 * 179.97438 * 22 21 19 44 44 H 1.07999 * 126.64312 * 180.21596 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3096 1.0870 0.0000 4 8 3.5857 0.6804 0.0054 5 6 3.6260 -0.6682 0.0000 6 6 4.8378 -1.4942 0.0005 7 8 4.7470 -2.7077 0.0009 8 7 6.0521 -0.9092 0.0004 9 6 7.2627 -1.7343 0.0004 10 6 8.4965 -0.8297 0.0010 11 1 8.5325 -0.2649 0.9325 12 6 9.7575 -1.6868 -0.1248 13 7 8.4221 0.0984 -1.1301 14 6 8.3632 -0.4189 -2.4995 15 6 8.4078 1.4282 -0.9110 16 8 8.4561 1.8565 0.2226 17 6 8.3306 2.3828 -2.0745 18 16 8.3285 4.0851 -1.4591 19 6 8.2355 4.9617 -2.9847 20 1 8.1997 4.4193 -3.9180 21 6 8.2091 6.3495 -2.9872 22 7 8.2542 7.0106 -1.8499 23 14 8.1097 7.2789 -4.6045 24 1 6.8665 6.8952 -5.3203 25 1 8.0963 8.7394 -4.3361 26 1 9.2879 6.9409 -5.4428 27 6 2.3408 -1.1292 0.0001 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9770 2.1144 -0.0006 32 1 6.1244 0.0581 0.0004 33 1 7.2734 -2.3636 -0.8896 34 1 7.2735 -2.3635 0.8904 35 1 9.7215 -2.2516 -1.0564 36 1 9.8129 -2.3773 0.7168 37 1 10.6365 -1.0423 -0.1248 38 1 7.3224 -0.5668 -2.7876 39 1 8.8301 0.2950 -3.1780 40 1 8.8932 -1.3700 -2.5517 41 1 9.1918 2.2325 -2.7255 42 1 7.4144 2.1985 -2.6355 43 1 8.2361 7.9805 -1.8516 44 1 2.0266 -2.1625 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734805447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -58.713452 kcal Electronic energy + Delta-G solvation = -27112.633672 eV Core-core repulsion = 23158.212089 eV Total energy + Delta-G solvation = -3954.421583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.84495 -40.18207 -39.21913 -36.58388 -34.64701 -34.12833 -32.46275 -32.20103 -30.72108 -28.79117 -27.78417 -26.94921 -26.46225 -25.51808 -23.25291 -21.73301 -21.27640 -20.08058 -19.17511 -18.08398 -17.77519 -17.01804 -16.52805 -16.51323 -16.40175 -15.56425 -15.48229 -14.95914 -14.83229 -14.35308 -14.14998 -13.73852 -13.46879 -13.40849 -13.29601 -13.21676 -13.16831 -13.00422 -12.79482 -12.59857 -12.39618 -12.30793 -12.05749 -11.94574 -11.84328 -11.14538 -11.06843 -11.06640 -10.79396 -10.49438 -9.90145 -9.85141 -9.49730 -9.33254 -9.09125 -8.73217 -8.67782 -8.27640 -6.54063 -6.24857 -3.95774 0.91121 2.12421 2.53987 2.80302 2.92734 3.02142 3.07118 3.20830 3.23163 3.26479 3.54643 4.17106 4.42513 4.47513 4.56897 4.75854 4.80647 4.99097 5.01463 5.04867 5.08712 5.10341 5.29243 5.35681 5.37869 5.39945 5.43204 5.48221 5.53352 5.60080 5.68250 5.72279 5.77154 5.82821 5.86242 5.95206 6.08487 6.13309 6.20524 6.54906 6.68541 7.27637 7.40786 7.56085 7.88185 8.31598 8.43547 9.20474 10.82433 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008684 B = 0.003428 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.573932 B = 8166.000065 C =10673.021339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.201 4.201 3 C 0.003 3.997 4 O -0.155 6.155 5 C -0.081 4.081 6 C 0.605 3.395 7 O -0.528 6.528 8 N -0.713 5.713 9 C 0.111 3.889 10 C 0.122 3.878 11 H 0.111 0.889 12 C -0.157 4.157 13 N -0.620 5.620 14 C 0.078 3.922 15 C 0.532 3.468 16 O -0.515 6.515 17 C -0.151 4.151 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.117 4.117 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.211 0.789 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 -18.240 1.793 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.203 4.203 3 C -0.068 4.068 4 O -0.050 6.050 5 C -0.133 4.133 6 C 0.391 3.609 7 O -0.407 6.407 8 N -0.364 5.364 9 C -0.013 4.013 10 C 0.018 3.982 11 H 0.128 0.872 12 C -0.216 4.216 13 N -0.357 5.357 14 C -0.066 4.066 15 C 0.321 3.679 16 O -0.389 6.389 17 C -0.301 4.301 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.794 -18.109 3.566 20.035 hybrid contribution -0.243 0.543 -2.506 2.576 sum -8.037 -17.566 1.060 19.346 Atomic orbital electron populations 1.20165 0.88592 1.02852 1.02278 1.20483 0.97741 0.92339 1.09692 1.24335 0.79788 1.00282 1.02362 1.84148 1.29419 1.21382 1.70031 1.21983 0.96008 0.80902 1.14453 1.16526 0.81285 0.86285 0.76760 1.90859 1.86199 1.12235 1.51369 1.45857 1.05057 1.11504 1.73941 1.21832 0.82953 0.93420 1.03117 1.21297 0.93735 0.90911 0.92235 0.87150 1.22053 0.96993 0.99931 1.02586 1.47965 1.75433 1.05547 1.06771 1.21770 1.01768 1.00371 0.82665 1.20434 0.74940 0.81713 0.90843 1.90707 1.47844 1.76547 1.23780 1.23566 1.04758 1.02446 0.99353 1.85379 1.96469 0.89706 1.11703 1.22815 1.58960 0.93792 0.92897 0.91019 1.24975 0.94500 0.96546 0.97429 1.69999 1.46687 1.08192 1.25375 0.86243 0.78838 0.78381 0.82160 1.19928 1.20786 1.19933 1.21799 0.90484 1.00442 1.01050 0.91321 0.91347 0.91390 0.77237 0.75250 0.90759 0.90040 0.91939 0.91075 0.91291 0.92800 0.90470 0.91074 0.89185 0.89264 0.92111 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.39 36.00 0.37 -0.21 16 2 C -0.20 -2.06 6.14 -104.93 -0.64 -2.70 16 3 C 0.00 0.03 12.00 29.63 0.36 0.38 16 4 O -0.16 -2.09 10.40 4.99 0.05 -2.04 16 5 C -0.08 -1.09 7.13 -36.80 -0.26 -1.35 16 6 C 0.60 8.43 7.79 -12.86 -0.10 8.33 16 7 O -0.53 -8.31 16.86 5.20 0.09 -8.22 16 8 N -0.71 -9.05 5.38 -61.63 -0.33 -9.38 16 9 C 0.11 1.17 4.97 -4.05 -0.02 1.15 16 10 C 0.12 1.34 2.80 -67.94 -0.19 1.15 16 11 H 0.11 1.44 6.90 -51.93 -0.36 1.08 16 12 C -0.16 -1.31 9.17 37.16 0.34 -0.97 16 13 N -0.62 -7.94 2.24 -173.93 -0.39 -8.33 16 14 C 0.08 0.78 9.40 59.85 0.56 1.34 16 15 C 0.53 9.39 7.40 -10.99 -0.08 9.31 16 16 O -0.51 -10.90 15.19 5.56 0.08 -10.82 16 17 C -0.15 -2.94 4.71 36.01 0.17 -2.77 16 18 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 19 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 20 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 23 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C -0.12 -1.38 10.57 -39.39 -0.42 -1.80 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.21 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.41 5.72 7.62 -40.82 -0.31 5.41 16 33 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.44 6.66 -51.93 -0.35 0.10 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 40 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 41 H 0.09 1.63 7.40 -51.92 -0.38 1.25 16 42 H 0.09 1.63 8.11 -51.91 -0.42 1.21 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 44 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -35.03 388.83 -7.10 -42.13 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.25 Total: 4.32 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 0.29 Total: -0.80 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.01 Total: -42.68 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.22 Total: -21.08 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.03 -7.10 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734805447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.585 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds