Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46856 * 89.99940 * 6 5 4 8 8 O 1.21274 * 120.00346 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99649 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47458 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47450 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47153 * 180.02562 * 12 11 10 14 14 C 1.34780 * 119.99915 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99911 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.46960 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99915 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99808 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00045 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99714 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47600 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47138 * 120.00529 * 22 20 18 25 25 H 1.48508 * 109.46730 * 239.99907 * 22 20 18 26 26 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 27 27 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 28 28 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 29 29 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 30 30 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 31 31 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 33 33 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 34 34 H 0.97002 * 120.00276 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47211 * 299.99901 * 10 9 7 36 36 H 1.09003 * 109.47408 * 59.99762 * 10 9 7 37 37 H 1.09005 * 109.46783 * 300.00441 * 11 10 9 38 38 H 1.09003 * 109.46832 * 59.99622 * 11 10 9 39 39 H 1.09005 * 109.47264 * 299.99872 * 12 11 10 40 40 H 1.08995 * 109.47773 * 59.99539 * 12 11 10 41 41 H 0.96993 * 119.99973 * 0.02562 * 13 12 11 42 42 H 1.09000 * 109.46898 * 300.00040 * 16 14 13 43 43 H 1.08991 * 109.47379 * 60.00094 * 16 14 13 44 44 H 0.97002 * 119.99257 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1607 -1.9432 1.4396 8 8 4.5351 -1.4567 2.3576 9 7 6.2055 -2.7561 1.6923 10 6 6.5845 -3.0534 3.0759 11 6 7.7920 -3.9931 3.0834 12 6 8.1874 -4.3040 4.5282 13 7 9.3439 -5.2033 4.5353 14 6 9.8704 -5.6148 5.7058 15 8 9.3864 -5.2409 6.7532 16 6 11.0603 -6.5394 5.7131 17 16 11.5280 -6.9073 7.4225 18 6 12.9015 -7.9746 7.1410 19 1 13.2058 -8.2082 6.1314 20 6 13.5929 -8.5143 8.2167 21 7 13.2223 -8.2291 9.4472 22 14 15.0493 -9.6452 7.9182 23 1 15.2598 -9.8063 6.4571 24 1 16.2668 -9.0571 8.5324 25 1 14.7788 -10.9720 8.5281 26 8 2.2923 -1.0895 0.0044 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9666 2.1203 -0.0045 31 1 4.5212 1.2433 0.0076 32 1 4.5127 -2.5646 -0.4964 33 1 5.6061 -1.1601 -0.4949 34 1 6.7062 -3.1451 0.9581 35 1 6.8416 -2.1269 3.5892 36 1 5.7490 -3.5319 3.5867 37 1 7.5344 -4.9196 2.5701 38 1 8.6277 -3.5149 2.5724 39 1 8.4448 -3.3776 5.0419 40 1 7.3516 -4.7823 5.0389 41 1 9.7311 -5.5019 3.6977 42 1 10.8037 -7.4659 5.1995 43 1 11.8957 -6.0604 5.2026 44 1 13.7053 -8.6066 10.1989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736885629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -73.526678 kcal Electronic energy + Delta-G solvation = -24591.047386 eV Core-core repulsion = 20635.983453 eV Total energy + Delta-G solvation = -3955.063933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.94384 -40.06142 -39.19488 -36.40930 -34.53514 -33.56330 -33.43659 -32.44248 -31.79940 -30.36453 -29.04927 -26.13258 -25.49452 -24.67653 -22.21223 -22.12031 -21.18690 -20.42727 -20.31965 -17.92857 -17.62645 -17.25314 -16.47529 -16.36908 -16.32298 -16.14753 -15.59099 -15.44732 -14.81750 -14.76387 -14.55432 -14.10779 -13.83514 -13.80128 -13.36399 -13.32023 -13.16338 -13.15053 -12.96396 -12.68918 -12.53778 -12.33005 -12.06201 -11.96272 -11.95203 -11.35383 -11.08124 -11.03344 -10.77268 -10.40091 -10.17569 -9.82155 -9.53622 -9.44694 -9.09256 -8.94170 -8.63158 -8.24577 -6.51505 -6.23066 -3.93752 1.30028 2.17893 2.20964 2.44366 2.78372 3.06040 3.06834 3.20522 3.27515 3.32017 3.68890 4.04903 4.18945 4.32246 4.43881 4.55836 4.59905 4.63166 4.66667 4.67618 4.79002 4.99896 5.01156 5.12305 5.14752 5.18243 5.26514 5.28263 5.46274 5.49867 5.60611 5.61531 5.74518 5.79039 5.86399 5.87479 5.94233 6.11245 6.19279 6.54974 6.81535 6.98630 7.58400 7.65356 7.75877 8.34001 8.57735 9.22415 10.84470 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.050538 B = 0.001219 C = 0.001206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.907432 B =22971.808414 C =23214.625415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.010 4.010 3 C -0.212 4.212 4 C -0.190 4.190 5 C -0.001 4.001 6 C -0.059 4.059 7 C 0.511 3.489 8 O -0.524 6.524 9 N -0.730 5.730 10 C 0.122 3.878 11 C -0.142 4.142 12 C 0.124 3.876 13 N -0.740 5.740 14 C 0.531 3.469 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 O -0.171 6.171 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.402 0.598 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.920 15.250 -26.595 36.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.060 4.060 3 C -0.231 4.231 4 C -0.209 4.209 5 C -0.051 4.051 6 C -0.099 4.099 7 C 0.297 3.703 8 O -0.399 6.399 9 N -0.383 5.383 10 C -0.002 4.002 11 C -0.180 4.180 12 C -0.001 4.001 13 N -0.395 5.395 14 C 0.317 3.683 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 O -0.068 6.068 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.269 15.914 -23.943 35.761 hybrid contribution 2.099 -1.290 -2.135 3.260 sum -19.169 14.624 -26.078 35.516 Atomic orbital electron populations 1.20316 0.85078 1.04219 1.03434 1.22429 0.93978 0.84064 1.05527 1.21543 0.92643 0.99421 1.09541 1.21503 0.98330 0.93632 1.07434 1.21349 0.82672 0.93789 1.07320 1.20067 0.93900 1.00342 0.95579 1.20422 0.80110 0.78726 0.91070 1.90781 1.52145 1.50554 1.46439 1.45925 1.33054 1.50085 1.09231 1.21260 0.97001 0.99489 0.82484 1.21972 0.98035 1.00214 0.97806 1.21101 0.89145 0.94601 0.95247 1.45961 1.33442 1.51175 1.08924 1.20327 0.84218 0.80615 0.83143 1.90716 1.61180 1.55754 1.31310 1.23528 0.97738 1.00589 1.08544 1.85431 1.39059 1.61809 0.97114 1.22908 1.16596 1.33353 0.95526 0.90874 1.24993 0.97707 0.96445 0.94422 1.70031 1.39689 1.42513 0.98024 0.86115 0.81100 0.79837 0.78428 1.19621 1.20554 1.20559 1.83915 1.16153 1.35196 1.71530 0.90108 0.90484 0.89277 0.83475 0.83556 0.86947 0.85750 0.76365 0.90780 0.90829 0.90432 0.90416 0.91228 0.91224 0.76835 0.89202 0.89200 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.42 36.00 0.38 0.01 16 2 C -0.01 -0.09 7.32 -35.63 -0.26 -0.35 16 3 C -0.21 -1.82 10.81 -39.71 -0.43 -2.25 16 4 C -0.19 -1.68 10.81 -39.70 -0.43 -2.11 16 5 C 0.00 -0.01 5.81 -35.62 -0.21 -0.22 16 6 C -0.06 -0.32 6.23 -29.03 -0.18 -0.50 16 7 C 0.51 4.32 7.82 -10.99 -0.09 4.23 16 8 O -0.52 -7.15 16.03 5.56 0.09 -7.06 16 9 N -0.73 -4.21 5.56 -60.30 -0.33 -4.55 16 10 C 0.12 0.88 5.67 -4.04 -0.02 0.86 16 11 C -0.14 -0.86 5.44 -26.73 -0.15 -1.00 16 12 C 0.12 1.28 5.67 -4.04 -0.02 1.26 16 13 N -0.74 -9.07 5.56 -60.29 -0.33 -9.41 16 14 C 0.53 9.66 7.85 -10.99 -0.09 9.57 16 15 O -0.52 -11.65 15.86 5.55 0.09 -11.56 16 16 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 22 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 O -0.17 -1.78 10.65 5.72 0.06 -1.72 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.40 0.95 8.47 -40.82 -0.35 0.60 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.40 3.55 8.47 -40.82 -0.35 3.20 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -39.94 398.36 -8.58 -48.52 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.58 Total: -1.07 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.08 Total: -6.16 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.06 Total: -39.32 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.24 Total: -20.35 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.94 -8.58 -48.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736885629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.007 kcal (2) G-P(sol) polarization free energy of solvation -39.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds