Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46856 * 89.99940 * 6 5 4 8 8 O 1.21274 * 120.00346 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99649 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47458 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47450 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47153 * 180.02562 * 12 11 10 14 14 C 1.34780 * 119.99915 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99911 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.46960 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99915 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99808 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00045 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99714 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47600 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47138 * 120.00529 * 22 20 18 25 25 H 1.48508 * 109.46730 * 239.99907 * 22 20 18 26 26 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 27 27 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 28 28 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 29 29 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 30 30 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 31 31 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 33 33 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 34 34 H 0.97002 * 120.00276 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47211 * 299.99901 * 10 9 7 36 36 H 1.09003 * 109.47408 * 59.99762 * 10 9 7 37 37 H 1.09005 * 109.46783 * 300.00441 * 11 10 9 38 38 H 1.09003 * 109.46832 * 59.99622 * 11 10 9 39 39 H 1.09005 * 109.47264 * 299.99872 * 12 11 10 40 40 H 1.08995 * 109.47773 * 59.99539 * 12 11 10 41 41 H 0.96993 * 119.99973 * 0.02562 * 13 12 11 42 42 H 1.09000 * 109.46898 * 300.00040 * 16 14 13 43 43 H 1.08991 * 109.47379 * 60.00094 * 16 14 13 44 44 H 0.97002 * 119.99257 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1607 -1.9432 1.4396 8 8 4.5351 -1.4567 2.3576 9 7 6.2055 -2.7561 1.6923 10 6 6.5845 -3.0534 3.0759 11 6 7.7920 -3.9931 3.0834 12 6 8.1874 -4.3040 4.5282 13 7 9.3439 -5.2033 4.5353 14 6 9.8704 -5.6148 5.7058 15 8 9.3864 -5.2409 6.7532 16 6 11.0603 -6.5394 5.7131 17 16 11.5280 -6.9073 7.4225 18 6 12.9015 -7.9746 7.1410 19 1 13.2058 -8.2082 6.1314 20 6 13.5929 -8.5143 8.2167 21 7 13.2223 -8.2291 9.4472 22 14 15.0493 -9.6452 7.9182 23 1 15.2598 -9.8063 6.4571 24 1 16.2668 -9.0571 8.5324 25 1 14.7788 -10.9720 8.5281 26 8 2.2923 -1.0895 0.0044 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9666 2.1203 -0.0045 31 1 4.5212 1.2433 0.0076 32 1 4.5127 -2.5646 -0.4964 33 1 5.6061 -1.1601 -0.4949 34 1 6.7062 -3.1451 0.9581 35 1 6.8416 -2.1269 3.5892 36 1 5.7490 -3.5319 3.5867 37 1 7.5344 -4.9196 2.5701 38 1 8.6277 -3.5149 2.5724 39 1 8.4448 -3.3776 5.0419 40 1 7.3516 -4.7823 5.0389 41 1 9.7311 -5.5019 3.6977 42 1 10.8037 -7.4659 5.1995 43 1 11.8957 -6.0604 5.2026 44 1 13.7053 -8.6066 10.1989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001736885629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = -103.953570 kcal Electronic energy + Delta-G solvation = -24592.366795 eV Core-core repulsion = 20635.983453 eV Total energy + Delta-G solvation = -3956.383342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.55401 -40.78651 -40.52076 -37.25665 -35.53468 -34.57781 -34.18432 -33.98169 -32.71629 -31.08309 -30.20679 -27.70193 -26.78243 -25.38403 -22.88176 -22.76403 -21.86718 -21.69995 -20.97481 -19.82141 -18.33884 -17.90192 -17.67903 -17.29994 -17.15894 -16.89249 -16.87089 -16.54021 -16.40656 -15.73829 -15.71452 -15.15299 -14.74514 -14.62580 -14.40436 -14.34062 -14.02472 -13.76741 -13.74034 -13.61227 -13.37905 -13.17874 -13.14596 -12.98288 -12.90678 -12.60927 -12.57143 -12.52329 -12.06939 -11.70287 -11.15283 -11.15270 -10.95865 -10.80760 -10.25690 -10.16993 -10.10898 -9.22066 -8.66255 -8.34157 -6.12302 0.68892 1.27871 1.42287 1.48019 1.56876 1.58112 1.61704 1.62098 1.91521 2.16165 2.28070 2.46531 3.00466 3.33161 3.55083 3.78854 3.93828 3.97055 3.99178 4.01802 4.11800 4.15979 4.27749 4.32248 4.44914 4.51123 4.52980 4.58161 4.59201 4.69255 4.78068 4.85613 4.91553 5.05687 5.10244 5.10940 5.28973 5.37648 5.42835 5.44012 5.63248 6.20421 6.20798 6.50612 6.54005 7.07491 7.22424 7.26768 8.75425 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.050538 B = 0.001219 C = 0.001206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.907432 B =22971.808414 C =23214.625415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.027 4.027 3 C -0.230 4.230 4 C -0.208 4.208 5 C -0.019 4.019 6 C -0.052 4.052 7 C 0.508 3.492 8 O -0.586 6.586 9 N -0.710 5.710 10 C 0.123 3.877 11 C -0.120 4.120 12 C 0.120 3.880 13 N -0.710 5.710 14 C 0.531 3.469 15 O -0.569 6.569 16 C -0.129 4.129 17 S -0.158 6.158 18 C -0.544 4.544 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.913 5.913 22 Si 0.999 3.001 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.275 1.275 26 O -0.194 6.194 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.423 0.577 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.420 0.580 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.897 14.590 -30.273 38.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.249 4.249 4 C -0.227 4.227 5 C -0.069 4.069 6 C -0.091 4.091 7 C 0.296 3.704 8 O -0.465 6.465 9 N -0.364 5.364 10 C -0.002 4.002 11 C -0.158 4.158 12 C -0.005 4.005 13 N -0.364 5.364 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.280 4.280 17 S 0.069 5.931 18 C -0.692 4.692 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.178 1.178 24 H -0.200 1.200 25 H -0.200 1.200 26 O -0.091 6.091 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.261 0.739 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.257 0.743 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.223 15.238 -27.731 37.552 hybrid contribution 1.689 -1.000 -1.073 2.237 sum -18.533 14.238 -28.804 37.093 Atomic orbital electron populations 1.20472 0.82873 1.04888 1.04736 1.23147 0.95505 0.83862 1.05193 1.21901 0.92871 1.00359 1.09753 1.21857 0.99050 0.94165 1.07631 1.22041 0.83100 0.94752 1.07029 1.20250 0.93703 1.01379 0.93762 1.20993 0.79707 0.77984 0.91750 1.90762 1.54287 1.53050 1.48434 1.45724 1.32342 1.49059 1.09272 1.21109 0.96945 0.98956 0.83175 1.21793 0.98065 1.01112 0.94852 1.21229 0.87702 0.93298 0.98233 1.45645 1.32970 1.49822 1.07989 1.20120 0.83853 0.80388 0.83985 1.90707 1.62668 1.57801 1.33565 1.23369 0.99240 1.02309 1.03058 1.85648 1.40039 1.62543 1.04823 1.23246 1.16541 1.33236 0.96198 0.89732 1.26133 1.00962 0.98099 0.93963 1.70199 1.41436 1.44064 0.99235 0.84899 0.76657 0.77186 0.79164 1.17824 1.20019 1.20043 1.83906 1.17056 1.36200 1.71983 0.88404 0.90552 0.87821 0.81876 0.82212 0.84293 0.82046 0.73865 0.92316 0.92596 0.88115 0.87951 0.92510 0.92598 0.74265 0.86967 0.86937 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.42 71.23 0.74 0.06 16 2 C -0.03 -0.48 7.32 24.83 0.18 -0.30 16 3 C -0.23 -3.93 10.81 22.19 0.24 -3.69 16 4 C -0.21 -3.62 10.81 22.19 0.24 -3.38 16 5 C -0.02 -0.34 5.81 24.84 0.14 -0.19 16 6 C -0.05 -0.44 6.23 29.10 0.18 -0.26 16 7 C 0.51 7.95 7.82 87.66 0.69 8.63 16 8 O -0.59 -16.32 16.03 -3.01 -0.05 -16.37 16 9 N -0.71 -6.45 5.56 -463.08 -2.57 -9.02 16 10 C 0.12 1.62 5.67 86.38 0.49 2.11 16 11 C -0.12 -1.06 5.44 30.59 0.17 -0.89 16 12 C 0.12 2.30 5.67 86.38 0.49 2.79 16 13 N -0.71 -15.63 5.56 -463.06 -2.57 -18.20 16 14 C 0.53 18.83 7.85 87.66 0.69 19.52 16 15 O -0.57 -26.28 15.86 -3.05 -0.05 -26.33 16 16 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 17 S -0.16 -8.70 20.57 -56.49 -1.16 -9.86 16 18 C -0.54 -30.73 9.50 67.95 0.65 -30.09 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 22 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 23 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 O -0.19 -4.06 10.65 -2.45 -0.03 -4.09 16 27 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.16 0.11 8.14 -2.39 -0.02 0.10 16 34 H 0.42 0.26 8.47 -92.71 -0.79 -0.52 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.42 5.71 8.47 -92.71 -0.79 4.93 16 42 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 43 H 0.11 3.77 8.14 -2.40 -0.02 3.76 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -93.00 398.36 1.14 -91.86 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -0.54 Total: 11.56 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 5.80 Total: -8.95 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -4.86 Total: -82.97 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.12 Total: -46.79 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -93.00 1.14 -91.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736885629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.096 kcal (2) G-P(sol) polarization free energy of solvation -92.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds