Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33458 * 118.45732 * 2 1 4 4 C 1.41795 * 118.78865 * 0.69296 * 3 2 1 5 5 O 1.21736 * 119.99975 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99946 * 179.97438 * 4 3 2 7 7 C 1.47068 * 136.05611 * 359.63672 * 6 4 3 8 8 C 1.53760 * 87.88923 * 152.95805 * 7 6 4 9 9 N 1.46494 * 114.26982 * 139.78761 * 8 7 6 10 10 C 1.34778 * 120.00045 * 111.47352 * 9 8 7 11 11 O 1.21283 * 119.99822 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00202 * 180.02562 * 10 9 8 13 13 S 1.80999 * 109.47243 * 180.02562 * 12 10 9 14 14 C 1.76196 * 100.00119 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00130 * 0.02562 * 14 13 12 16 16 C 1.38803 * 120.00237 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99536 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00397 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46918 * 89.99797 * 18 16 14 20 20 H 1.48495 * 109.47341 * 210.00181 * 18 16 14 21 21 H 1.48502 * 109.46938 * 330.00479 * 18 16 14 22 22 C 1.47063 * 136.05820 * 180.02562 * 6 4 3 23 23 C 1.50413 * 122.42163 * 180.69194 * 3 2 1 24 24 C 1.53209 * 109.56754 * 342.33264 * 23 3 2 25 25 C 1.53480 * 108.25687 * 47.35578 * 24 23 3 26 26 O 1.34354 * 118.45963 * 180.26911 * 2 1 3 27 27 H 1.09000 * 109.47354 * 179.73260 * 1 2 3 28 28 H 1.08999 * 109.47274 * 299.73391 * 1 2 3 29 29 H 1.09000 * 109.47262 * 59.73468 * 1 2 3 30 30 H 1.08999 * 113.46703 * 267.68644 * 7 6 4 31 31 H 1.09000 * 113.47077 * 38.12954 * 7 6 4 32 32 H 1.08995 * 114.39699 * 272.67606 * 8 7 6 33 33 H 0.97005 * 120.00557 * 291.48095 * 9 8 7 34 34 H 1.08998 * 109.46825 * 300.00098 * 12 10 9 35 35 H 1.09000 * 109.47386 * 59.99927 * 12 10 9 36 36 H 0.97003 * 119.99150 * 179.97438 * 17 16 14 37 37 H 1.09004 * 113.47052 * 321.86450 * 22 6 4 38 38 H 1.08998 * 113.46955 * 92.25111 * 22 6 4 39 39 H 1.09001 * 109.45437 * 222.30166 * 23 3 2 40 40 H 1.09006 * 109.45637 * 102.36270 * 23 3 2 41 41 H 1.09002 * 109.70610 * 287.66608 * 24 23 3 42 42 H 1.09004 * 109.74313 * 167.06468 * 24 23 3 43 43 H 1.09010 * 109.70055 * 177.60646 * 25 24 23 44 44 H 1.08990 * 109.74329 * 57.01301 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1430 1.1733 0.0000 4 6 1.3759 2.3658 0.0150 5 8 0.1600 2.3072 0.0281 6 7 1.9929 3.5640 0.0159 7 6 3.3850 4.0381 0.0109 8 6 2.8869 5.3175 -0.6814 9 7 3.5229 6.5475 -0.2032 10 6 4.3541 7.2347 -1.0116 11 8 4.5751 6.8349 -2.1351 12 6 5.0087 8.4997 -0.5195 13 16 6.0574 9.1841 -1.8264 14 6 6.6782 10.6132 -1.0037 15 1 6.3766 10.8256 0.0114 16 6 7.5556 11.4655 -1.6597 17 7 7.9235 11.2063 -2.8967 18 14 8.2132 12.9809 -0.7878 19 1 9.4708 12.6364 -0.0770 20 1 8.4844 14.0472 -1.7850 21 1 7.2072 13.4638 0.1921 22 6 1.5705 4.9726 0.0291 23 6 3.6434 1.2774 -0.0153 24 6 4.2550 -0.0619 0.4086 25 6 3.5533 -1.1802 -0.3741 26 8 2.1473 -1.1812 -0.0055 27 1 -0.3634 -1.0276 -0.0048 28 1 -0.3634 0.5097 0.8923 29 1 -0.3634 0.5179 -0.8876 30 1 3.7875 4.2132 1.0087 31 1 4.0467 3.4356 -0.6113 32 1 2.8390 5.2518 -1.7683 33 1 3.3460 6.8675 0.6953 34 1 4.2410 9.2259 -0.2525 35 1 5.6181 8.2766 0.3562 36 1 8.5364 11.8021 -3.3553 37 1 0.6860 5.1663 -0.5777 38 1 1.4941 5.3934 1.0317 39 1 3.9604 2.0568 0.6776 40 1 3.9797 1.5278 -1.0215 41 1 4.1056 -0.2121 1.4778 42 1 5.3212 -0.0679 0.1821 43 1 4.0002 -2.1418 -0.1214 44 1 3.6526 -0.9987 -1.4442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737981432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = -45.052119 kcal Electronic energy + Delta-G solvation = -26539.245435 eV Core-core repulsion = 22585.416251 eV Total energy + Delta-G solvation = -3953.829183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43450 -40.31338 -39.02166 -37.92855 -34.73764 -33.71120 -33.06918 -32.46184 -30.36113 -28.97937 -27.70197 -26.46986 -25.81016 -25.50005 -23.22616 -22.40350 -20.62131 -20.37064 -19.05497 -17.88632 -17.42329 -16.93518 -16.73509 -16.36741 -15.99664 -15.99467 -15.22351 -14.91657 -14.83062 -14.68275 -14.50701 -14.22015 -13.72931 -13.43230 -13.36703 -13.18214 -13.16423 -13.00290 -12.82328 -12.55479 -12.39151 -12.29176 -12.01568 -11.75879 -11.36546 -11.21472 -11.09289 -11.05947 -10.87054 -10.79596 -9.87044 -9.79788 -9.49117 -9.14596 -9.10580 -9.01395 -8.59211 -8.28698 -6.54470 -6.25239 -3.96188 1.07558 2.45453 2.73077 2.91557 2.96881 3.12997 3.20007 3.26535 3.31413 3.68066 4.07493 4.16880 4.19241 4.21597 4.40381 4.48850 4.67149 4.71027 4.74715 4.85683 4.95990 5.08108 5.10174 5.10202 5.13446 5.21598 5.24357 5.38544 5.40845 5.47040 5.47870 5.54041 5.61687 5.68637 5.81203 5.82044 5.86510 6.04235 6.08031 6.45894 6.87880 7.47371 7.56168 7.58772 8.00341 8.31680 8.47321 9.20299 10.82125 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.001877 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.317945 B =14915.520183 C =15516.476079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.190 3.810 3 C -0.319 4.319 4 C 0.603 3.397 5 O -0.552 6.552 6 N -0.642 5.642 7 C 0.078 3.922 8 C 0.116 3.884 9 N -0.726 5.726 10 C 0.536 3.464 11 O -0.513 6.513 12 C -0.154 4.154 13 S -0.060 6.060 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.097 3.903 23 C -0.075 4.075 24 C -0.159 4.159 25 C 0.055 3.945 26 O -0.309 6.309 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.402 0.598 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.269 0.731 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.803 -23.122 9.417 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 C -0.324 4.324 4 C 0.400 3.600 5 O -0.434 6.434 6 N -0.378 5.378 7 C -0.047 4.047 8 C 0.009 3.991 9 N -0.380 5.380 10 C 0.322 3.678 11 O -0.386 6.386 12 C -0.305 4.305 13 S 0.167 5.833 14 C -0.684 4.684 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.027 4.027 23 C -0.112 4.112 24 C -0.196 4.196 25 C -0.019 4.019 26 O -0.220 6.220 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.149 0.851 33 H 0.236 0.764 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.128 0.872 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.128 -24.187 7.408 27.635 hybrid contribution 0.514 1.794 2.372 3.018 sum -10.614 -22.392 9.780 26.641 Atomic orbital electron populations 1.21181 0.86633 1.02007 1.05807 1.21400 0.94520 0.83846 0.86288 1.19594 0.96602 0.92806 1.23360 1.15968 0.86626 0.81439 0.75969 1.90826 1.13832 1.86254 1.52477 1.49045 1.09569 1.04796 1.74347 1.23873 0.85267 0.94186 1.01381 1.22744 0.92011 0.83521 1.00868 1.45838 1.48628 1.25558 1.17973 1.20390 0.77768 0.84555 0.85057 1.90714 1.60264 1.68495 1.19124 1.23540 1.03668 0.96736 1.06540 1.85412 1.53874 1.28526 1.15496 1.22859 1.32713 1.10441 1.02406 0.90883 1.25000 0.95503 0.98149 0.94959 1.70018 1.32216 1.37407 1.10598 0.86162 0.79146 0.81086 0.79072 1.20271 1.20748 1.19684 1.23292 0.98626 0.79871 1.00922 1.20564 0.90630 0.97743 1.02218 1.22233 1.01068 0.95061 1.01257 1.23579 0.77818 1.00859 0.99618 1.86224 1.25702 1.28509 1.81586 0.92107 0.88285 0.88168 0.89425 0.89227 0.85066 0.76353 0.89020 0.89049 0.92156 0.89641 0.89576 0.89793 0.90679 0.90407 0.89260 0.87189 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 8.30 36.01 0.30 -0.64 16 2 C 0.19 1.86 6.69 -35.98 -0.24 1.62 16 3 C -0.32 -3.24 5.70 -105.07 -0.60 -3.84 16 4 C 0.60 7.27 7.75 -14.90 -0.12 7.16 16 5 O -0.55 -7.85 13.17 5.16 0.07 -7.78 16 6 N -0.64 -6.71 3.67 -188.44 -0.69 -7.40 16 7 C 0.08 0.69 5.86 -8.37 -0.05 0.64 16 8 C 0.12 1.20 4.62 -67.66 -0.31 0.89 16 9 N -0.73 -8.18 5.39 -53.47 -0.29 -8.47 16 10 C 0.54 9.00 7.85 -10.99 -0.09 8.91 16 11 O -0.51 -10.73 15.45 5.56 0.09 -10.65 16 12 C -0.15 -2.88 6.16 36.00 0.22 -2.65 16 13 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 14 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 15 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 16 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 17 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 18 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.10 0.90 8.38 -8.50 -0.07 0.82 16 23 C -0.07 -0.58 4.16 -27.91 -0.12 -0.70 16 24 C -0.16 -0.94 6.23 -26.37 -0.16 -1.10 16 25 C 0.06 0.32 7.15 37.41 0.27 0.59 16 26 O -0.31 -2.71 10.39 -14.90 -0.15 -2.87 16 27 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 28 H 0.10 1.01 6.99 -51.93 -0.36 0.64 16 29 H 0.10 1.02 7.04 -51.93 -0.37 0.66 16 30 H 0.09 0.66 8.12 -51.93 -0.42 0.23 16 31 H 0.09 0.78 5.87 -51.93 -0.31 0.47 16 32 H 0.13 1.64 7.45 -51.93 -0.39 1.25 16 33 H 0.40 3.29 8.76 -40.82 -0.36 2.93 16 34 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 35 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.64 5.73 -51.93 -0.30 0.34 16 40 H 0.07 0.58 7.41 -51.93 -0.38 0.20 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 0.40 8.14 -51.92 -0.42 -0.03 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -35.49 373.31 -8.85 -44.34 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.23 Total: 0.84 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.77 Total: -0.89 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: -0.25 Total: -40.80 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.00 Total: -21.30 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.49 -8.85 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737981432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.708 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds