Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.43747 * 2 1 4 4 C 1.47019 * 105.95198 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19008 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99934 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99915 * 0.02562 * 5 4 3 8 8 C 1.46495 * 119.99858 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47102 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47171 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46962 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00251 * 179.97438 * 11 10 9 13 13 O 1.21293 * 119.99537 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00651 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47324 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99898 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.38801 * 119.99788 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99607 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46922 * 90.00568 * 20 18 16 22 22 H 1.48504 * 109.46944 * 209.99957 * 20 18 16 23 23 H 1.48492 * 109.47545 * 330.00496 * 20 18 16 24 24 C 1.36413 * 105.62051 * 359.97438 * 4 3 2 25 25 C 1.50701 * 125.80425 * 180.02562 * 24 4 3 26 26 O 1.33661 * 108.39213 * 359.77210 * 24 4 3 27 27 H 1.09002 * 109.47152 * 90.00216 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00316 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00297 * 1 2 3 30 30 H 1.07997 * 127.02289 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99893 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47061 * 299.99457 * 8 7 5 33 33 H 1.08998 * 109.47445 * 59.99668 * 8 7 5 34 34 H 1.09001 * 109.47401 * 299.99954 * 9 8 7 35 35 H 1.09004 * 109.46885 * 60.00086 * 9 8 7 36 36 H 1.08998 * 109.47234 * 299.99857 * 10 9 8 37 37 H 1.08998 * 109.47204 * 60.00026 * 10 9 8 38 38 H 0.97005 * 120.00193 * 0.02562 * 11 10 9 39 39 H 1.08998 * 109.46828 * 300.00220 * 14 12 11 40 40 H 1.09004 * 109.46791 * 60.00395 * 14 12 11 41 41 H 0.97001 * 120.00156 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.46794 * 89.99963 * 25 24 4 43 43 H 1.08998 * 109.46574 * 209.99835 * 25 24 4 44 44 H 1.08994 * 109.46424 * 329.99461 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 6.0484 3.5629 -0.0009 9 6 5.6821 5.0483 -0.0019 10 6 6.9605 5.8889 -0.0021 11 7 6.6097 7.3113 -0.0024 12 6 7.5815 8.2451 -0.0022 13 8 8.7466 7.9078 -0.0021 14 6 7.2208 9.7083 -0.0031 15 16 8.7331 10.7026 -0.0032 16 6 8.0355 12.3206 -0.0051 17 1 6.9629 12.4462 -0.0053 18 6 8.8645 13.4338 -0.0051 19 7 10.1719 13.2808 -0.0043 20 14 8.1248 15.1492 -0.0064 21 1 7.9282 15.6044 1.3935 22 1 9.0427 16.0835 -0.7063 23 1 6.8158 15.1233 -0.7070 24 6 3.5791 -0.7582 0.0015 25 6 4.7391 -1.7202 0.0030 26 8 2.2852 -1.0935 0.0065 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.9596 2.1230 -0.0004 31 1 3.9576 3.1935 -0.0005 32 1 6.6347 3.3335 0.8889 33 1 6.6339 3.3328 -0.8910 34 1 5.0960 5.2775 -0.8919 35 1 5.0964 5.2787 0.8881 36 1 7.5462 5.6597 0.8881 37 1 7.5466 5.6587 -0.8918 38 1 5.6779 7.5811 -0.0021 39 1 6.6355 9.9376 -0.8935 40 1 6.6343 9.9384 0.8865 41 1 10.7513 14.0588 -0.0047 42 1 5.0180 -1.9514 1.0310 43 1 4.4509 -2.6375 -0.5104 44 1 5.5871 -1.2674 -0.5107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001742733521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -78.233416 kcal Electronic energy + Delta-G solvation = -24878.968853 eV Core-core repulsion = 20923.700820 eV Total energy + Delta-G solvation = -3955.268032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.08065 -39.80996 -39.16255 -36.35597 -34.55114 -33.65783 -33.35292 -32.43574 -31.64196 -29.98214 -29.09007 -26.27440 -25.51273 -25.04492 -23.27820 -22.16815 -21.37412 -20.39271 -19.88031 -17.88261 -17.62009 -16.99003 -16.55616 -16.28352 -16.27814 -16.03992 -15.51428 -15.20477 -14.81113 -14.67548 -14.43235 -14.03550 -13.92235 -13.84341 -13.54500 -13.38643 -13.15259 -13.12550 -13.02592 -12.89694 -12.67531 -12.31336 -12.03487 -11.97255 -11.92699 -11.33187 -11.06861 -11.03162 -10.77143 -10.33927 -10.25053 -9.82441 -9.46278 -9.43257 -9.07813 -8.92480 -8.85826 -8.24235 -6.50738 -6.22171 -3.92926 0.92098 1.50802 2.20802 2.73872 2.98619 3.07143 3.08190 3.21813 3.27791 3.32078 3.70436 3.93618 4.19773 4.30245 4.31051 4.59594 4.62043 4.66456 4.70169 4.77879 4.87626 4.96206 5.08355 5.12030 5.12982 5.16463 5.20755 5.26571 5.31757 5.44181 5.53360 5.62811 5.71499 5.77234 5.83581 5.88697 5.89133 6.03995 6.12228 6.56325 6.57624 7.11635 7.58798 7.66964 7.85929 8.34485 8.59117 9.23061 10.85257 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028325 B = 0.001372 C = 0.001311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.278982 B =20409.912469 C =21356.534671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.011 4.011 3 C -0.188 4.188 4 C -0.246 4.246 5 C 0.591 3.409 6 O -0.540 6.540 7 N -0.723 5.723 8 C 0.123 3.877 9 C -0.143 4.143 10 C 0.124 3.876 11 N -0.740 5.740 12 C 0.531 3.469 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.080 3.920 25 C -0.084 4.084 26 O -0.175 6.175 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.401 0.599 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.057 -28.738 -0.006 36.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.207 4.207 4 C -0.250 4.250 5 C 0.379 3.621 6 O -0.418 6.418 7 N -0.375 5.375 8 C -0.001 4.001 9 C -0.181 4.181 10 C 0.000 4.000 11 N -0.395 5.395 12 C 0.317 3.683 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C 0.027 3.973 25 C -0.140 4.140 26 O -0.072 6.072 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.174 0.826 31 H 0.235 0.765 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.235 -29.877 -0.006 35.533 hybrid contribution -2.778 2.141 0.019 3.508 sum -22.013 -27.736 0.013 35.410 Atomic orbital electron populations 1.20363 0.84590 1.04363 1.03831 1.22267 0.94058 0.83665 1.05957 1.22564 0.90699 0.99505 1.07958 1.21088 0.93729 0.93330 1.16862 1.17170 0.87410 0.81711 0.75822 1.90778 1.28784 1.71813 1.50463 1.45737 1.10026 1.05829 1.75876 1.21256 0.86584 0.88894 1.03358 1.21976 0.98760 0.93811 1.03542 1.21100 0.95785 0.80161 1.02988 1.45962 1.09720 1.05618 1.78183 1.20324 0.85362 0.87461 0.75154 1.90716 1.18776 1.82186 1.47317 1.23529 1.07608 0.94340 1.04916 1.85420 1.02460 0.98765 1.96718 1.22869 0.95213 0.91366 1.59030 0.90925 1.24991 0.94690 0.99352 0.94517 1.70015 1.02546 1.30886 1.46796 0.86167 0.78861 0.82112 0.78344 1.20271 1.20736 1.19716 1.22827 0.82904 0.94069 0.97461 1.20644 0.92066 0.96701 1.04549 1.83718 1.16198 1.35675 1.71567 0.89834 0.89047 0.90343 0.82608 0.76498 0.90716 0.90727 0.90465 0.90473 0.91204 0.91195 0.76840 0.89209 0.89216 0.92163 0.89204 0.90328 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.40 36.01 0.37 0.16 16 2 C -0.01 -0.07 7.28 -35.74 -0.26 -0.33 16 3 C -0.19 -1.25 10.48 -37.45 -0.39 -1.64 16 4 C -0.25 -2.21 6.31 -103.28 -0.65 -2.86 16 5 C 0.59 6.04 7.81 -12.54 -0.10 5.94 16 6 O -0.54 -7.10 14.84 5.27 0.08 -7.02 16 7 N -0.72 -5.49 5.55 -61.40 -0.34 -5.83 16 8 C 0.12 0.97 5.67 -4.05 -0.02 0.95 16 9 C -0.14 -0.95 5.44 -26.73 -0.15 -1.10 16 10 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 11 N -0.74 -9.25 5.56 -60.29 -0.33 -9.58 16 12 C 0.53 9.74 7.85 -10.99 -0.09 9.65 16 13 O -0.52 -11.71 15.86 5.55 0.09 -11.62 16 14 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 20 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.08 0.70 7.37 -34.97 -0.26 0.44 16 25 C -0.08 -0.56 9.89 36.01 0.36 -0.20 16 26 O -0.17 -1.44 10.52 7.64 0.08 -1.36 16 27 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.16 0.60 7.74 -52.49 -0.41 0.20 16 31 H 0.40 2.01 7.64 -40.82 -0.31 1.70 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 3.66 8.47 -40.82 -0.35 3.32 16 39 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 40 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 0.89 6.48 -51.93 -0.34 0.55 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -37.88 394.65 -8.21 -46.09 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.44 Total: -0.21 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.79 Total: -3.44 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.06 Total: -40.81 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.25 Total: -20.00 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.88 -8.21 -46.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001742733521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.141 kcal (2) G-P(sol) polarization free energy of solvation -37.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds