Wall clock time and date at job start Sat Apr 11 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.43747 * 2 1 4 4 C 1.47019 * 105.95198 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19008 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99934 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99915 * 0.02562 * 5 4 3 8 8 C 1.46495 * 119.99858 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47102 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47171 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46962 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00251 * 179.97438 * 11 10 9 13 13 O 1.21293 * 119.99537 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00651 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47324 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99898 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.38801 * 119.99788 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99607 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46922 * 90.00568 * 20 18 16 22 22 H 1.48504 * 109.46944 * 209.99957 * 20 18 16 23 23 H 1.48492 * 109.47545 * 330.00496 * 20 18 16 24 24 C 1.36413 * 105.62051 * 359.97438 * 4 3 2 25 25 C 1.50701 * 125.80425 * 180.02562 * 24 4 3 26 26 O 1.33661 * 108.39213 * 359.77210 * 24 4 3 27 27 H 1.09002 * 109.47152 * 90.00216 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00316 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00297 * 1 2 3 30 30 H 1.07997 * 127.02289 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99893 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47061 * 299.99457 * 8 7 5 33 33 H 1.08998 * 109.47445 * 59.99668 * 8 7 5 34 34 H 1.09001 * 109.47401 * 299.99954 * 9 8 7 35 35 H 1.09004 * 109.46885 * 60.00086 * 9 8 7 36 36 H 1.08998 * 109.47234 * 299.99857 * 10 9 8 37 37 H 1.08998 * 109.47204 * 60.00026 * 10 9 8 38 38 H 0.97005 * 120.00193 * 0.02562 * 11 10 9 39 39 H 1.08998 * 109.46828 * 300.00220 * 14 12 11 40 40 H 1.09004 * 109.46791 * 60.00395 * 14 12 11 41 41 H 0.97001 * 120.00156 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.46794 * 89.99963 * 25 24 4 43 43 H 1.08998 * 109.46574 * 209.99835 * 25 24 4 44 44 H 1.08994 * 109.46424 * 329.99461 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 6.0484 3.5629 -0.0009 9 6 5.6821 5.0483 -0.0019 10 6 6.9605 5.8889 -0.0021 11 7 6.6097 7.3113 -0.0024 12 6 7.5815 8.2451 -0.0022 13 8 8.7466 7.9078 -0.0021 14 6 7.2208 9.7083 -0.0031 15 16 8.7331 10.7026 -0.0032 16 6 8.0355 12.3206 -0.0051 17 1 6.9629 12.4462 -0.0053 18 6 8.8645 13.4338 -0.0051 19 7 10.1719 13.2808 -0.0043 20 14 8.1248 15.1492 -0.0064 21 1 7.9282 15.6044 1.3935 22 1 9.0427 16.0835 -0.7063 23 1 6.8158 15.1233 -0.7070 24 6 3.5791 -0.7582 0.0015 25 6 4.7391 -1.7202 0.0030 26 8 2.2852 -1.0935 0.0065 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.9596 2.1230 -0.0004 31 1 3.9576 3.1935 -0.0005 32 1 6.6347 3.3335 0.8889 33 1 6.6339 3.3328 -0.8910 34 1 5.0960 5.2775 -0.8919 35 1 5.0964 5.2787 0.8881 36 1 7.5462 5.6597 0.8881 37 1 7.5466 5.6587 -0.8918 38 1 5.6779 7.5811 -0.0021 39 1 6.6355 9.9376 -0.8935 40 1 6.6343 9.9384 0.8865 41 1 10.7513 14.0588 -0.0047 42 1 5.0180 -1.9514 1.0310 43 1 4.4509 -2.6375 -0.5104 44 1 5.5871 -1.2674 -0.5107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001742733521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:56 Heat of formation + Delta-G solvation = -106.294036 kcal Electronic energy + Delta-G solvation = -24880.185652 eV Core-core repulsion = 20923.700820 eV Total energy + Delta-G solvation = -3956.484832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.62503 -40.69898 -40.42978 -37.25369 -35.57475 -34.57598 -34.21753 -33.86283 -32.63280 -30.71758 -30.15246 -27.70928 -26.94355 -25.70662 -23.94239 -22.88421 -22.02811 -21.68381 -20.58578 -19.79172 -18.28235 -17.72695 -17.55689 -17.47140 -17.09234 -16.87091 -16.68455 -16.58296 -16.33550 -15.76427 -15.42409 -15.22541 -14.70043 -14.46498 -14.41316 -14.23004 -14.12983 -14.02526 -13.81245 -13.48121 -13.36270 -13.24365 -13.19266 -13.15389 -12.88080 -12.61925 -12.58560 -12.49295 -12.09030 -11.72186 -11.16132 -11.13398 -10.95396 -10.84505 -10.26028 -10.16759 -10.10621 -9.37564 -8.66038 -8.33690 -6.11999 0.27768 1.01852 1.27799 1.43536 1.48021 1.58009 1.62379 1.70231 2.06680 2.27233 2.28265 2.42157 3.00636 3.33275 3.47712 3.70997 3.80459 3.91085 3.96822 3.96990 4.12864 4.25882 4.32169 4.45391 4.51586 4.52979 4.53585 4.57397 4.57989 4.68283 4.74377 4.77289 4.93256 5.02752 5.08909 5.10320 5.20910 5.35938 5.42674 5.43470 5.45332 6.04011 6.20729 6.49148 6.53514 7.07638 7.16504 7.26708 8.75548 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028325 B = 0.001372 C = 0.001311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.278982 B =20409.912469 C =21356.534671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.018 4.018 3 C -0.191 4.191 4 C -0.266 4.266 5 C 0.585 3.415 6 O -0.579 6.579 7 N -0.708 5.708 8 C 0.125 3.875 9 C -0.122 4.122 10 C 0.121 3.879 11 N -0.710 5.710 12 C 0.531 3.469 13 O -0.568 6.568 14 C -0.129 4.129 15 S -0.157 6.157 16 C -0.546 4.546 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.257 1.257 24 C 0.064 3.936 25 C -0.082 4.082 26 O -0.185 6.185 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.185 0.815 31 H 0.416 0.584 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.419 0.581 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.271 0.729 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.115 -28.196 0.017 38.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.210 4.210 4 C -0.270 4.270 5 C 0.374 3.626 6 O -0.461 6.461 7 N -0.360 5.360 8 C 0.000 4.000 9 C -0.159 4.159 10 C -0.003 4.003 11 N -0.365 5.365 12 C 0.317 3.683 13 O -0.447 6.447 14 C -0.280 4.280 15 S 0.071 5.929 16 C -0.694 4.694 17 H 0.103 0.897 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.181 1.181 24 C 0.011 3.989 25 C -0.138 4.138 26 O -0.082 6.082 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.202 0.798 31 H 0.253 0.747 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.257 0.743 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.393 -29.343 0.017 37.526 hybrid contribution -1.602 1.830 0.011 2.432 sum -24.995 -27.513 0.028 37.171 Atomic orbital electron populations 1.20551 0.81979 1.05567 1.04924 1.23039 0.95523 0.83152 1.04852 1.22884 0.89275 1.00997 1.07802 1.21202 0.94375 0.93634 1.17794 1.17455 0.87343 0.82462 0.75358 1.90756 1.30228 1.72655 1.52414 1.45577 1.10674 1.05030 1.74709 1.21162 0.86645 0.89812 1.02338 1.21794 0.96825 0.91634 1.05693 1.21212 0.97837 0.79224 1.02022 1.45651 1.09742 1.05541 1.75533 1.20111 0.85430 0.87638 0.75128 1.90707 1.21079 1.82716 1.50179 1.23369 1.03599 0.94024 1.06981 1.85631 1.09068 1.01173 1.97067 1.23217 0.95786 0.91560 1.58848 0.89742 1.26137 0.95028 1.04272 0.93728 1.70187 1.04342 1.32287 1.48035 0.84944 0.78365 0.75823 0.78778 1.19326 1.20417 1.18076 1.23135 0.83501 0.94549 0.97724 1.20626 0.91156 0.97061 1.04911 1.83726 1.16118 1.36687 1.71661 0.88676 0.87076 0.89897 0.79805 0.74671 0.91901 0.91904 0.88276 0.88284 0.92336 0.92327 0.74318 0.87002 0.86980 0.92027 0.88656 0.88512 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.40 71.24 0.74 0.52 16 2 C -0.02 -0.20 7.28 24.76 0.18 -0.02 16 3 C -0.19 -2.14 10.48 23.65 0.25 -1.89 16 4 C -0.27 -4.62 6.31 -18.99 -0.12 -4.74 16 5 C 0.58 11.83 7.81 86.65 0.68 12.50 16 6 O -0.58 -15.81 14.84 -4.05 -0.06 -15.87 16 7 N -0.71 -9.61 5.55 -466.43 -2.59 -12.20 16 8 C 0.12 1.83 5.67 86.38 0.49 2.32 16 9 C -0.12 -1.25 5.44 30.59 0.17 -1.08 16 10 C 0.12 2.38 5.67 86.38 0.49 2.87 16 11 N -0.71 -15.95 5.56 -463.05 -2.57 -18.53 16 12 C 0.53 18.96 7.85 87.66 0.69 19.65 16 13 O -0.57 -26.29 15.86 -3.07 -0.05 -26.33 16 14 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 15 S -0.16 -8.65 20.57 -56.49 -1.16 -9.82 16 16 C -0.55 -30.93 9.50 67.95 0.65 -30.29 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.74 5.49 84.86 0.47 1.20 16 19 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 20 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 C 0.06 1.11 7.37 25.26 0.19 1.29 16 25 C -0.08 -1.14 9.89 71.24 0.70 -0.43 16 26 O -0.18 -2.91 10.52 4.43 0.05 -2.87 16 27 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.08 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.18 0.78 7.74 -2.91 -0.02 0.76 16 31 H 0.42 2.93 7.64 -92.71 -0.71 2.22 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.42 5.97 8.47 -92.70 -0.79 5.19 16 39 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 40 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 44 H 0.09 1.64 6.48 -2.39 -0.02 1.63 16 Total: -1.00 -86.66 394.65 1.47 -85.19 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -0.46 Total: 13.52 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 6.00 Total: -2.57 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -4.88 Total: -86.47 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.06 Total: -45.07 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.82 kcal Total: -86.66 1.47 -85.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001742733521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.103 kcal (2) G-P(sol) polarization free energy of solvation -86.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds