Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34173 * 127.02718 * 2 1 4 4 O 1.34216 * 109.12708 * 180.02562 * 3 2 1 5 5 C 1.33646 * 110.90761 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.80241 * 179.97438 * 5 4 3 7 7 C 1.36415 * 108.39797 * 359.97438 * 5 4 3 8 8 C 1.47382 * 127.19393 * 179.73694 * 7 5 4 9 9 O 1.21619 * 120.00008 * 90.02284 * 8 7 5 10 10 N 1.34775 * 120.00094 * 270.02936 * 8 7 5 11 11 C 1.46497 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47376 * 34.99938 * 11 10 8 13 13 C 1.52998 * 109.47250 * 274.99444 * 11 10 8 14 14 C 1.52999 * 109.47260 * 154.99769 * 11 10 8 15 15 N 1.46509 * 109.46830 * 304.99961 * 14 11 10 16 16 C 1.34778 * 119.99767 * 179.97438 * 15 14 11 17 17 O 1.21286 * 120.00101 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99912 * 179.97438 * 16 15 14 19 19 S 1.80997 * 109.46951 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99863 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00066 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00321 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99516 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00122 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47343 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47115 * 120.00184 * 24 22 20 27 27 H 1.48500 * 109.47128 * 239.99911 * 24 22 20 28 28 H 1.09000 * 109.46952 * 269.96923 * 1 2 3 29 29 H 1.08995 * 109.47171 * 29.96744 * 1 2 3 30 30 H 1.08999 * 109.47759 * 149.97335 * 1 2 3 31 31 H 1.08002 * 125.43114 * 0.02832 * 3 2 1 32 32 H 1.08991 * 109.47068 * 270.00147 * 6 5 4 33 33 H 1.09000 * 109.46685 * 30.00369 * 6 5 4 34 34 H 1.08999 * 109.46727 * 149.99408 * 6 5 4 35 35 H 0.96997 * 120.00100 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47140 * 300.00138 * 13 11 10 37 37 H 1.08999 * 109.46945 * 60.00366 * 13 11 10 38 38 H 1.09002 * 109.47488 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47029 * 64.99672 * 14 11 10 40 40 H 1.08992 * 109.47870 * 184.99981 * 14 11 10 41 41 H 0.96991 * 119.99804 * 359.97438 * 15 14 11 42 42 H 1.08996 * 109.46964 * 300.00512 * 18 16 15 43 43 H 1.09000 * 109.47087 * 60.00248 * 18 16 15 44 44 H 0.96998 * 119.99798 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6586 -0.0006 5 6 3.6623 -0.6760 -0.0015 6 6 4.9292 -1.4923 -0.0029 7 6 2.3923 -1.1738 -0.0010 8 6 1.9912 -2.5921 -0.0071 9 8 1.8278 -3.1823 1.0437 10 7 1.8057 -3.2349 -1.1770 11 6 1.4077 -4.6447 -1.1830 12 1 0.7434 -4.8384 -0.3407 13 6 2.6523 -5.5266 -1.0642 14 6 0.6796 -4.9636 -2.4903 15 7 -0.4436 -4.0387 -2.6619 16 6 -1.2326 -4.1315 -3.7506 17 8 -1.0132 -4.9809 -4.5881 18 6 -2.3883 -3.1805 -3.9268 19 16 -3.2486 -3.5567 -5.4742 20 6 -4.5134 -2.3309 -5.4269 21 1 -4.5683 -1.6434 -4.5958 22 6 -5.4400 -2.2495 -6.4572 23 7 -5.3734 -3.0877 -7.4698 24 14 -6.7804 -0.9495 -6.4073 25 1 -6.6369 -0.1376 -5.1722 26 1 -6.6598 -0.0682 -7.5964 27 1 -8.1106 -1.6096 -6.4134 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.9895 2.1010 0.0004 32 1 5.2339 -1.6883 -1.0308 33 1 5.7169 -0.9412 0.5108 34 1 4.7528 -2.4374 0.5105 35 1 1.9358 -2.7641 -2.0150 36 1 3.3164 -5.3330 -1.9065 37 1 3.1709 -5.2995 -0.1328 38 1 2.3561 -6.5756 -1.0682 39 1 1.3704 -4.8554 -3.3266 40 1 0.3059 -5.9869 -2.4579 41 1 -0.6193 -3.3597 -1.9920 42 1 -3.0791 -3.2894 -3.0908 43 1 -2.0150 -2.1570 -3.9587 44 1 -6.0211 -3.0311 -8.1897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744629314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -99.565690 kcal Electronic energy + Delta-G solvation = -26702.237808 eV Core-core repulsion = 22746.044739 eV Total energy + Delta-G solvation = -3956.193069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.54396 -41.07482 -40.32638 -37.48955 -35.01895 -34.78670 -34.57566 -33.54017 -32.20466 -30.80512 -29.05777 -27.73966 -27.42482 -26.84422 -24.69410 -22.19745 -21.74784 -21.26079 -20.70231 -19.85241 -18.86944 -17.91291 -17.71405 -17.38918 -17.13674 -16.87775 -16.64613 -16.38923 -16.00345 -15.76349 -15.35769 -14.86002 -14.60105 -14.53056 -14.34623 -14.19883 -14.15616 -13.87176 -13.78597 -13.61256 -13.56977 -13.28935 -13.25806 -13.15486 -12.99791 -12.91054 -12.58895 -12.31298 -12.08867 -11.70623 -11.27543 -11.15576 -11.00601 -10.46005 -10.30173 -10.27010 -10.17952 -9.44764 -8.65906 -8.34643 -6.12103 0.61562 1.22309 1.26926 1.37373 1.41630 1.47216 1.58152 1.59073 1.85919 2.13732 2.26643 2.30880 2.99841 3.31797 3.50212 3.52611 3.73930 3.91958 3.98216 4.04265 4.18414 4.23734 4.29112 4.36172 4.50553 4.56361 4.58053 4.61857 4.69008 4.74308 4.75132 4.75915 4.94432 4.98474 5.01600 5.20101 5.22538 5.34171 5.39396 5.42792 5.45360 6.06947 6.20457 6.36274 6.41091 7.06461 7.07178 7.18652 8.74762 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.002584 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.063247 B =10832.851531 C =12543.617333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.168 4.168 3 C -0.034 4.034 4 O -0.179 6.179 5 C 0.043 3.957 6 C -0.081 4.081 7 C -0.261 4.261 8 C 0.604 3.396 9 O -0.569 6.569 10 N -0.705 5.705 11 C 0.140 3.860 12 H 0.087 0.913 13 C -0.156 4.156 14 C 0.116 3.884 15 N -0.715 5.715 16 C 0.537 3.463 17 O -0.560 6.560 18 C -0.131 4.131 19 S -0.148 6.148 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.240 0.760 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.410 0.590 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.997 6.609 17.914 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C -0.099 4.099 4 O -0.076 6.076 5 C -0.009 4.009 6 C -0.137 4.137 7 C -0.265 4.265 8 C 0.391 3.609 9 O -0.448 6.448 10 N -0.357 5.357 11 C 0.035 3.965 12 H 0.105 0.895 13 C -0.214 4.214 14 C -0.008 4.008 15 N -0.369 5.369 16 C 0.323 3.677 17 O -0.438 6.438 18 C -0.282 4.282 19 S 0.080 5.920 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.201 1.201 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.256 0.744 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.247 0.753 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.435 4.872 17.118 27.861 hybrid contribution -1.472 1.843 0.645 2.445 sum 19.963 6.715 17.763 27.553 Atomic orbital electron populations 1.20234 0.87885 1.03595 1.02667 1.21615 0.97541 0.90639 1.07191 1.24300 0.78785 1.00798 1.06025 1.83746 1.30331 1.21853 1.71621 1.23009 0.96570 0.81080 1.00236 1.20576 0.90383 0.97340 1.05390 1.21096 0.94321 0.93689 1.17385 1.17368 0.75383 0.84813 0.83372 1.90798 1.52276 1.68789 1.32958 1.46072 1.69116 1.11973 1.08577 1.21212 0.97264 0.80812 0.97208 0.89537 1.22068 0.96410 1.00067 1.02865 1.21753 0.87632 0.94330 0.97109 1.45742 1.30724 1.37090 1.23335 1.19994 0.82686 0.83814 0.81248 1.90705 1.72022 1.37350 1.43694 1.23373 0.98766 1.02497 1.03595 1.85552 1.34793 1.47335 1.24357 1.23227 1.15778 1.19315 1.10918 0.89975 1.26113 1.00209 0.98881 0.93951 1.70182 1.36844 1.37611 1.10124 0.84918 0.76895 0.77395 0.78828 1.18009 1.19908 1.20064 0.91137 0.89223 0.92155 0.74380 0.87541 0.88285 0.89578 0.75138 0.90672 0.92330 0.89847 0.90274 0.89837 0.75344 0.87580 0.87192 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 10.38 71.24 0.74 -0.60 16 2 C -0.17 -2.96 6.38 -18.49 -0.12 -3.08 16 3 C -0.03 -0.48 11.96 66.89 0.80 0.33 16 4 O -0.18 -2.96 10.52 4.51 0.05 -2.92 16 5 C 0.04 0.71 7.37 25.26 0.19 0.90 16 6 C -0.08 -0.81 10.24 71.24 0.73 -0.08 16 7 C -0.26 -5.09 6.07 -18.99 -0.12 -5.21 16 8 C 0.60 12.68 7.22 86.65 0.63 13.30 16 9 O -0.57 -16.16 16.77 -4.09 -0.07 -16.23 16 10 N -0.71 -11.16 4.51 -445.84 -2.01 -13.18 16 11 C 0.14 2.21 2.73 44.99 0.12 2.33 16 12 H 0.09 1.63 7.58 -2.39 -0.02 1.61 16 13 C -0.16 -1.99 9.48 71.98 0.68 -1.31 16 14 C 0.12 2.20 5.23 86.38 0.45 2.65 16 15 N -0.71 -16.73 5.39 -463.04 -2.49 -19.22 16 16 C 0.54 18.72 7.85 87.66 0.69 19.41 16 17 O -0.56 -24.57 15.86 -3.05 -0.05 -24.62 16 18 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 19 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16 20 C -0.54 -30.63 9.50 67.96 0.65 -29.98 16 21 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 24 Si 1.00 43.09 29.55 68.60 2.03 45.11 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.24 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.95 7.94 -2.39 -0.02 0.94 16 35 H 0.41 5.58 8.59 -92.71 -0.80 4.79 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.41 7.90 8.14 -92.71 -0.75 7.14 16 42 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 43 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 44 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -81.50 397.91 2.40 -79.10 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.52 Total: 20.97 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 6.34 Total: -4.71 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -4.22 Total: -87.52 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.07 Total: -43.77 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -81.50 2.40 -79.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744629314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.463 kcal (2) G-P(sol) polarization free energy of solvation -81.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds