Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33648 * 125.80548 * 2 1 4 4 C 1.34214 * 110.91281 * 179.73475 * 3 2 1 5 5 C 1.34177 * 109.12202 * 0.45134 * 4 3 2 6 6 C 1.36414 * 125.79801 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19599 * 359.97438 * 6 2 1 8 8 O 1.21616 * 119.99610 * 359.97044 * 7 6 2 9 9 N 1.34783 * 120.00408 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.99950 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47583 * 34.99186 * 10 9 7 12 12 C 1.53006 * 109.47070 * 274.99370 * 10 9 7 13 13 C 1.53005 * 109.47179 * 155.00036 * 10 9 7 14 14 C 1.53001 * 109.46429 * 294.99663 * 13 10 9 15 15 N 1.46509 * 109.46923 * 180.02562 * 14 13 10 16 16 C 1.34778 * 119.99737 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00092 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99589 * 179.97438 * 16 15 14 19 19 S 1.81001 * 109.47205 * 180.02562 * 18 16 15 20 20 C 1.76202 * 100.00086 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00115 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99815 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99725 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99966 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46775 * 90.00400 * 24 22 20 26 26 H 1.48496 * 109.46949 * 210.00156 * 24 22 20 27 27 H 1.48501 * 109.47285 * 330.00492 * 24 22 20 28 28 H 1.09001 * 109.46861 * 269.99620 * 1 2 3 29 29 H 1.08999 * 109.47154 * 29.99168 * 1 2 3 30 30 H 1.08995 * 109.47634 * 149.99949 * 1 2 3 31 31 H 1.08002 * 125.43915 * 180.28813 * 4 3 2 32 32 H 1.08002 * 127.02647 * 179.84063 * 5 4 3 33 33 H 0.97001 * 119.99484 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.46997 * 59.99991 * 12 10 9 35 35 H 1.08993 * 109.47392 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.47193 * 300.00446 * 12 10 9 37 37 H 1.09000 * 109.47241 * 54.99172 * 13 10 9 38 38 H 1.08996 * 109.47273 * 174.99965 * 13 10 9 39 39 H 1.09004 * 109.47456 * 299.99546 * 14 13 10 40 40 H 1.08997 * 109.47669 * 60.00192 * 14 13 10 41 41 H 0.96998 * 119.99440 * 359.97438 * 15 14 13 42 42 H 1.09006 * 109.47662 * 300.00243 * 18 16 15 43 43 H 1.09000 * 109.47116 * 59.99994 * 18 16 15 44 44 H 0.97003 * 119.99674 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0002 6 6 2.3049 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0006 8 8 0.6889 -2.7891 0.0003 9 7 2.7929 -3.5016 -0.0016 10 6 2.3644 -4.9025 -0.0023 11 1 1.4528 -5.0033 -0.5912 12 6 2.0958 -5.3543 1.4346 13 6 3.4651 -5.7723 -0.6130 14 6 3.6471 -5.4040 -2.0868 15 7 4.7006 -6.2372 -2.6718 16 6 5.0354 -6.0881 -3.9688 17 8 4.4649 -5.2639 -4.6515 18 6 6.1195 -6.9448 -4.5704 19 16 6.3348 -6.5093 -6.3140 20 6 7.6217 -7.6301 -6.7527 21 1 8.0238 -8.3068 -6.0132 22 6 8.1193 -7.6427 -8.0484 23 7 9.0803 -8.4803 -8.3762 24 14 7.4242 -6.4718 -9.3272 25 1 8.1961 -5.2033 -9.3082 26 1 7.5245 -7.0922 -10.6726 27 1 5.9997 -6.1892 -9.0172 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 4.4172 1.4284 0.0115 32 1 4.5928 -1.1841 -0.0002 33 1 3.7381 -3.2835 -0.0027 34 1 1.3117 -4.7347 1.8697 35 1 1.7773 -6.3967 1.4342 36 1 3.0073 -5.2535 2.0236 37 1 4.3999 -5.6039 -0.0783 38 1 3.1847 -6.8225 -0.5329 39 1 2.7123 -5.5723 -2.6216 40 1 3.9275 -4.3538 -2.1670 41 1 5.1571 -6.8961 -2.1257 42 1 7.0545 -6.7762 -4.0360 43 1 5.8393 -7.9951 -4.4898 44 1 9.4283 -8.4888 -9.2816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744889592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -74.997306 kcal Electronic energy + Delta-G solvation = -25965.126121 eV Core-core repulsion = 22009.998418 eV Total energy + Delta-G solvation = -3955.127704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.93462 -40.01674 -39.23540 -36.87675 -34.54560 -33.50547 -32.45197 -32.36695 -31.62377 -30.17849 -28.23858 -27.28427 -25.63073 -24.29588 -23.27223 -21.95203 -20.97719 -20.49468 -20.08750 -18.31655 -17.86364 -16.77806 -16.67461 -16.45184 -16.10939 -15.95910 -15.48557 -15.08525 -14.96305 -14.81271 -14.21239 -13.91515 -13.80839 -13.76480 -13.48976 -13.36870 -13.26710 -13.25708 -12.89011 -12.80661 -12.39136 -12.29369 -12.11211 -11.71913 -11.61908 -11.32420 -11.26375 -11.01727 -10.61668 -10.24199 -10.20221 -9.86912 -9.57651 -9.43342 -9.04076 -8.98736 -8.92607 -8.51301 -6.93264 -6.30174 -4.01989 1.01674 1.67493 2.41762 2.74392 2.89116 2.95772 3.06567 3.28128 3.32854 3.50080 3.62690 4.12777 4.31993 4.34183 4.44752 4.47710 4.53646 4.68346 4.74477 4.89249 5.04961 5.06732 5.08921 5.13050 5.15059 5.24210 5.27732 5.32951 5.34481 5.46745 5.55813 5.69550 5.76010 5.78343 5.80903 5.87165 5.89910 5.98994 6.17904 6.48295 6.63358 7.19229 7.57478 7.92885 7.93234 8.40163 8.46943 9.16047 10.78980 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014648 B = 0.002041 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.003128 B =13715.053661 C =14912.151448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.080 3.920 3 O -0.176 6.176 4 C -0.037 4.037 5 C -0.188 4.188 6 C -0.250 4.250 7 C 0.595 3.405 8 O -0.542 6.542 9 N -0.719 5.719 10 C 0.147 3.853 11 H 0.094 0.906 12 C -0.162 4.162 13 C -0.140 4.140 14 C 0.121 3.879 15 N -0.738 5.738 16 C 0.529 3.471 17 O -0.518 6.518 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.209 0.791 32 H 0.157 0.843 33 H 0.401 0.599 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.258 13.504 24.638 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.027 3.973 3 O -0.072 6.072 4 C -0.102 4.102 5 C -0.207 4.207 6 C -0.254 4.254 7 C 0.383 3.617 8 O -0.421 6.421 9 N -0.371 5.371 10 C 0.042 3.958 11 H 0.112 0.888 12 C -0.220 4.220 13 C -0.178 4.178 14 C -0.003 4.003 15 N -0.393 5.393 16 C 0.315 3.685 17 O -0.393 6.393 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.225 0.775 32 H 0.175 0.825 33 H 0.235 0.765 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.039 14.886 23.345 31.507 hybrid contribution 1.777 -0.978 0.380 2.064 sum -13.262 13.908 23.724 30.531 Atomic orbital electron populations 1.20629 0.83705 1.05261 1.04370 1.22853 0.94181 0.83131 0.97125 1.83781 1.17229 1.34989 1.71237 1.23886 0.83490 0.96469 1.06390 1.22874 0.96595 0.94648 1.06631 1.21129 0.93394 0.93829 1.17067 1.17158 0.85410 0.83737 0.75378 1.90757 1.16546 1.84057 1.50698 1.45881 1.09760 1.05776 1.75643 1.20897 0.98241 0.79521 0.97139 0.88764 1.22166 1.02226 1.01827 0.95811 1.22134 0.99447 1.00987 0.95246 1.21277 0.91570 0.95348 0.92149 1.45964 1.40278 1.41574 1.11472 1.20296 0.83493 0.83523 0.81188 1.90710 1.53129 1.35207 1.60215 1.23279 0.99494 1.02265 1.02428 1.84814 1.50571 1.53252 1.02960 1.22314 1.21003 1.23130 1.00452 0.89385 1.24720 0.93886 0.95093 0.97654 1.69940 1.25718 1.35760 1.20246 0.86731 0.82469 0.81392 0.81245 1.19218 1.19928 1.15909 0.89330 0.90304 0.87203 0.77475 0.82542 0.76462 0.91845 0.91328 0.92369 0.90494 0.89266 0.91462 0.91585 0.76680 0.88523 0.88448 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 9.89 36.01 0.36 -0.26 16 2 C 0.08 0.76 7.37 -34.97 -0.26 0.50 16 3 O -0.18 -1.57 10.52 7.67 0.08 -1.49 16 4 C -0.04 -0.25 12.03 29.30 0.35 0.10 16 5 C -0.19 -1.44 10.60 -37.45 -0.40 -1.83 16 6 C -0.25 -2.46 6.31 -103.27 -0.65 -3.11 16 7 C 0.59 6.34 7.78 -12.54 -0.10 6.24 16 8 O -0.54 -7.09 14.51 5.26 0.08 -7.01 16 9 N -0.72 -5.81 4.53 -54.90 -0.25 -6.06 16 10 C 0.15 1.10 2.57 -67.93 -0.17 0.92 16 11 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 12 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 13 C -0.14 -0.89 4.87 -26.73 -0.13 -1.02 16 14 C 0.12 1.25 5.56 -4.04 -0.02 1.23 16 15 N -0.74 -8.76 5.56 -60.29 -0.33 -9.09 16 16 C 0.53 9.22 7.85 -10.99 -0.09 9.14 16 17 O -0.52 -11.22 15.86 5.56 0.09 -11.14 16 18 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 19 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 20 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 24 Si 0.86 21.79 27.74 -169.99 -4.71 17.07 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.11 0.97 6.48 -51.93 -0.34 0.63 16 31 H 0.21 0.65 8.06 -52.49 -0.42 0.22 16 32 H 0.16 0.83 7.74 -52.49 -0.41 0.42 16 33 H 0.40 2.52 7.77 -40.82 -0.32 2.20 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 41 H 0.40 3.46 8.47 -40.82 -0.35 3.12 16 42 H 0.10 1.69 8.14 -51.91 -0.42 1.26 16 43 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -37.15 389.81 -7.15 -44.29 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.43 Total: 1.72 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.32 Total: -2.89 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.19 Total: -40.84 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.25 Total: -19.63 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.15 -7.15 -44.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744889592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.704 kcal (2) G-P(sol) polarization free energy of solvation -37.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds