Wall clock time and date at job start Sat Apr 11 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34175 * 125.43986 * 2 1 4 4 C 1.47024 * 105.95824 * 180.02562 * 3 2 1 5 5 C 1.47376 * 127.19400 * 180.02562 * 4 3 2 6 6 O 1.21614 * 120.00023 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00260 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00533 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47281 * 179.97438 * 8 7 5 10 10 H 1.09007 * 109.46691 * 55.00839 * 9 8 7 11 11 C 1.52994 * 109.47313 * 295.00596 * 9 8 7 12 12 C 1.53003 * 109.46790 * 175.00106 * 9 8 7 13 13 N 1.46499 * 109.46708 * 185.00148 * 12 9 8 14 14 C 1.34784 * 119.99893 * 180.02562 * 13 12 9 15 15 O 1.21283 * 119.99649 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99774 * 179.72962 * 14 13 12 17 17 S 1.81008 * 109.46759 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99946 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99996 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00252 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99702 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47247 * 59.99814 * 22 20 18 24 24 H 1.48504 * 109.46907 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47096 * 299.99984 * 22 20 18 26 26 C 1.36417 * 105.61117 * 0.25967 * 4 3 2 27 27 O 1.33647 * 108.39591 * 359.57802 * 26 4 3 28 28 H 1.09005 * 109.47340 * 89.99894 * 1 2 3 29 29 H 1.08995 * 109.47383 * 210.00030 * 1 2 3 30 30 H 1.09003 * 109.47060 * 330.00098 * 1 2 3 31 31 H 1.08006 * 127.02401 * 0.02562 * 3 2 1 32 32 H 0.97002 * 119.99362 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.46701 * 60.00421 * 8 7 5 34 34 H 1.08998 * 109.47517 * 300.00740 * 8 7 5 35 35 H 1.08995 * 109.47196 * 59.99903 * 11 9 8 36 36 H 1.09006 * 109.47245 * 179.97438 * 11 9 8 37 37 H 1.09000 * 109.47110 * 299.99807 * 11 9 8 38 38 H 1.08998 * 109.46692 * 65.00650 * 12 9 8 39 39 H 1.08994 * 109.47584 * 305.00514 * 12 9 8 40 40 H 0.97005 * 120.00261 * 0.02562 * 13 12 9 41 41 H 1.09001 * 109.46809 * 299.99238 * 16 14 13 42 42 H 1.08993 * 109.47525 * 59.99679 * 16 14 13 43 43 H 0.97000 * 119.99806 * 179.97438 * 21 20 18 44 44 H 1.08001 * 125.79955 * 179.72993 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9024 1.4125 -0.0003 6 8 4.8319 2.6266 0.0000 7 7 6.1068 0.8075 -0.0005 8 6 7.3309 1.6122 -0.0008 9 6 8.5495 0.6871 -0.0003 10 1 8.4825 -0.0024 -0.8419 11 6 8.5869 -0.1063 1.3073 12 6 9.8246 1.5233 -0.1262 13 7 10.9822 0.6334 -0.2459 14 6 12.2205 1.1513 -0.3686 15 8 12.3764 2.3540 -0.3796 16 6 13.4118 0.2359 -0.4855 17 16 14.9204 1.2251 -0.6346 18 6 16.1192 -0.0609 -0.7513 19 1 15.8073 -1.0944 -0.7193 20 6 17.4644 0.2542 -0.8843 21 7 17.8444 1.5139 -0.9238 22 14 18.7352 -1.1092 -1.0087 23 1 18.4445 -1.9499 -2.1978 24 1 20.0889 -0.5133 -1.1421 25 1 18.6827 -1.9481 0.2155 26 6 3.5789 -0.7582 -0.0069 27 8 2.2852 -1.0935 -0.0006 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9595 2.1230 0.0004 32 1 6.1629 -0.1609 -0.0012 33 1 7.3523 2.2412 0.8892 34 1 7.3521 2.2412 -0.8907 35 1 7.6785 -0.7020 1.3970 36 1 9.4549 -0.7658 1.3075 37 1 8.6539 0.5831 2.1489 38 1 9.9374 2.1492 0.7589 39 1 9.7589 2.1550 -1.0120 40 1 10.8575 -0.3286 -0.2367 41 1 13.4760 -0.3921 0.4031 42 1 13.3010 -0.3938 -1.3683 43 1 18.7845 1.7341 -1.0163 44 1 4.4102 -1.4476 -0.0132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746570816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:28 Heat of formation + Delta-G solvation = -74.321350 kcal Electronic energy + Delta-G solvation = -25135.480446 eV Core-core repulsion = 21180.382054 eV Total energy + Delta-G solvation = -3955.098392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.07610 -39.97170 -39.23000 -37.08420 -34.61288 -33.61018 -32.88842 -32.43566 -31.96771 -29.39579 -27.68857 -26.93591 -25.82887 -25.36284 -23.54234 -21.61397 -21.02457 -20.41780 -20.05482 -18.28754 -17.82313 -16.85768 -16.71052 -16.65069 -16.20938 -15.94239 -15.56060 -15.25721 -14.84697 -14.80396 -14.49221 -13.96792 -13.82516 -13.70697 -13.65185 -13.57326 -13.30542 -13.15540 -13.01351 -12.93358 -12.57081 -12.35921 -11.95448 -11.60097 -11.41755 -11.27359 -11.05421 -11.04583 -10.77899 -10.43891 -10.27193 -9.83467 -9.51166 -9.43483 -9.10452 -9.07239 -8.91957 -8.24890 -6.50964 -6.22198 -3.93095 0.83711 1.54573 2.27834 2.62953 2.96648 3.05254 3.08091 3.22693 3.27128 3.30830 3.69889 3.96935 4.14898 4.19736 4.34293 4.40065 4.46453 4.49159 4.76034 4.88688 4.95685 5.00336 5.08704 5.12041 5.12850 5.25535 5.27179 5.33009 5.41002 5.46046 5.53624 5.60562 5.65640 5.83357 5.84875 5.86983 5.89403 5.99137 6.11616 6.47276 6.56595 7.03846 7.58233 7.66358 7.81248 8.34078 8.58964 9.22880 10.85181 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.037674 B = 0.001415 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.033582 B =19784.792293 C =20348.927666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.163 4.163 4 C -0.230 4.230 5 C 0.586 3.414 6 O -0.532 6.532 7 N -0.725 5.725 8 C 0.127 3.873 9 C -0.115 4.115 10 H 0.085 0.915 11 C -0.151 4.151 12 C 0.128 3.872 13 N -0.738 5.738 14 C 0.531 3.469 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.018 3.982 27 O -0.172 6.172 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.160 0.840 32 H 0.397 0.603 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.320 -8.825 2.859 35.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.183 4.183 4 C -0.235 4.235 5 C 0.373 3.627 6 O -0.409 6.409 7 N -0.377 5.377 8 C 0.003 3.997 9 C -0.134 4.134 10 H 0.103 0.897 11 C -0.208 4.208 12 C 0.004 3.996 13 N -0.393 5.393 14 C 0.317 3.683 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.052 4.052 27 O -0.068 6.068 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.177 0.823 32 H 0.232 0.768 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -34.067 -6.045 2.825 34.714 hybrid contribution 0.849 -3.106 -0.072 3.221 sum -33.218 -9.151 2.753 34.565 Atomic orbital electron populations 1.20358 0.84506 1.04394 1.03880 1.22366 0.94234 0.83515 1.06075 1.22514 0.89896 0.99843 1.06043 1.21497 0.94728 0.93270 1.13958 1.17258 0.82137 0.87120 0.76165 1.90819 1.87070 1.13635 1.49367 1.45802 1.05512 1.10206 1.76207 1.21332 0.81590 0.93306 1.03445 1.21601 0.94003 0.97978 0.99827 0.89675 1.21900 1.01887 1.00313 0.96696 1.21162 0.83259 0.92442 1.02773 1.45966 1.06077 1.09873 1.77405 1.20313 0.83406 0.89308 0.75256 1.90715 1.85217 1.15358 1.47679 1.23528 0.99200 1.02847 1.04830 1.85421 0.92423 1.09737 1.95714 1.22828 0.93434 0.93765 1.58518 0.90990 1.24987 0.97716 0.96273 0.94532 1.70009 1.17133 1.16700 1.46418 0.86229 0.79567 0.80938 0.78789 1.19944 1.20789 1.19949 1.24384 0.84421 0.95287 1.01114 1.83730 1.16414 1.35616 1.71055 0.89799 0.90285 0.89023 0.82262 0.76810 0.90590 0.90620 0.92637 0.91795 0.91814 0.91103 0.91180 0.76865 0.89234 0.89254 0.92107 0.77262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.40 36.00 0.37 0.16 16 2 C -0.01 -0.09 7.28 -35.74 -0.26 -0.35 16 3 C -0.16 -1.31 10.90 -37.45 -0.41 -1.72 16 4 C -0.23 -1.89 6.31 -103.28 -0.65 -2.54 16 5 C 0.59 5.84 7.81 -12.54 -0.10 5.74 16 6 O -0.53 -7.58 16.98 5.27 0.09 -7.49 16 7 N -0.72 -4.93 5.27 -61.40 -0.32 -5.26 16 8 C 0.13 0.98 5.06 -4.04 -0.02 0.96 16 9 C -0.11 -0.76 2.46 -90.62 -0.22 -0.98 16 10 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 11 C -0.15 -0.87 8.94 37.15 0.33 -0.54 16 12 C 0.13 1.34 5.07 -4.04 -0.02 1.32 16 13 N -0.74 -9.01 5.28 -60.30 -0.32 -9.33 16 14 C 0.53 9.61 7.85 -10.98 -0.09 9.53 16 15 O -0.52 -11.60 15.86 5.56 0.09 -11.51 16 16 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 22 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 C 0.02 0.10 11.61 30.08 0.35 0.45 16 27 O -0.17 -1.15 10.52 7.67 0.08 -1.07 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.40 1.44 6.63 -40.82 -0.27 1.17 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.23 7.18 -51.93 -0.37 -0.15 16 36 H 0.06 0.38 7.18 -51.93 -0.37 0.00 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 3.61 7.66 -40.82 -0.31 3.29 16 41 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.21 0.23 7.47 -52.49 -0.39 -0.17 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -38.75 393.29 -7.59 -46.35 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.34 Total: -0.99 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.29 Total: -3.66 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.09 Total: -39.95 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.26 Total: -20.07 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.75 -7.59 -46.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746570816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.976 kcal (2) G-P(sol) polarization free energy of solvation -38.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds