Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34175 * 125.43986 * 2 1 4 4 C 1.47024 * 105.95824 * 180.02562 * 3 2 1 5 5 C 1.47376 * 127.19400 * 180.02562 * 4 3 2 6 6 O 1.21614 * 120.00023 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00260 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00533 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47281 * 179.97438 * 8 7 5 10 10 H 1.09007 * 109.46691 * 55.00839 * 9 8 7 11 11 C 1.52994 * 109.47313 * 295.00596 * 9 8 7 12 12 C 1.53003 * 109.46790 * 175.00106 * 9 8 7 13 13 N 1.46499 * 109.46708 * 185.00148 * 12 9 8 14 14 C 1.34784 * 119.99893 * 180.02562 * 13 12 9 15 15 O 1.21283 * 119.99649 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99774 * 179.72962 * 14 13 12 17 17 S 1.81008 * 109.46759 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99946 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99996 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00252 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99702 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47247 * 59.99814 * 22 20 18 24 24 H 1.48504 * 109.46907 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47096 * 299.99984 * 22 20 18 26 26 C 1.36417 * 105.61117 * 0.25967 * 4 3 2 27 27 O 1.33647 * 108.39591 * 359.57802 * 26 4 3 28 28 H 1.09005 * 109.47340 * 89.99894 * 1 2 3 29 29 H 1.08995 * 109.47383 * 210.00030 * 1 2 3 30 30 H 1.09003 * 109.47060 * 330.00098 * 1 2 3 31 31 H 1.08006 * 127.02401 * 0.02562 * 3 2 1 32 32 H 0.97002 * 119.99362 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.46701 * 60.00421 * 8 7 5 34 34 H 1.08998 * 109.47517 * 300.00740 * 8 7 5 35 35 H 1.08995 * 109.47196 * 59.99903 * 11 9 8 36 36 H 1.09006 * 109.47245 * 179.97438 * 11 9 8 37 37 H 1.09000 * 109.47110 * 299.99807 * 11 9 8 38 38 H 1.08998 * 109.46692 * 65.00650 * 12 9 8 39 39 H 1.08994 * 109.47584 * 305.00514 * 12 9 8 40 40 H 0.97005 * 120.00261 * 0.02562 * 13 12 9 41 41 H 1.09001 * 109.46809 * 299.99238 * 16 14 13 42 42 H 1.08993 * 109.47525 * 59.99679 * 16 14 13 43 43 H 0.97000 * 119.99806 * 179.97438 * 21 20 18 44 44 H 1.08001 * 125.79955 * 179.72993 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9024 1.4125 -0.0003 6 8 4.8319 2.6266 0.0000 7 7 6.1068 0.8075 -0.0005 8 6 7.3309 1.6122 -0.0008 9 6 8.5495 0.6871 -0.0003 10 1 8.4825 -0.0024 -0.8419 11 6 8.5869 -0.1063 1.3073 12 6 9.8246 1.5233 -0.1262 13 7 10.9822 0.6334 -0.2459 14 6 12.2205 1.1513 -0.3686 15 8 12.3764 2.3540 -0.3796 16 6 13.4118 0.2359 -0.4855 17 16 14.9204 1.2251 -0.6346 18 6 16.1192 -0.0609 -0.7513 19 1 15.8073 -1.0944 -0.7193 20 6 17.4644 0.2542 -0.8843 21 7 17.8444 1.5139 -0.9238 22 14 18.7352 -1.1092 -1.0087 23 1 18.4445 -1.9499 -2.1978 24 1 20.0889 -0.5133 -1.1421 25 1 18.6827 -1.9481 0.2155 26 6 3.5789 -0.7582 -0.0069 27 8 2.2852 -1.0935 -0.0006 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9595 2.1230 0.0004 32 1 6.1629 -0.1609 -0.0012 33 1 7.3523 2.2412 0.8892 34 1 7.3521 2.2412 -0.8907 35 1 7.6785 -0.7020 1.3970 36 1 9.4549 -0.7658 1.3075 37 1 8.6539 0.5831 2.1489 38 1 9.9374 2.1492 0.7589 39 1 9.7589 2.1550 -1.0120 40 1 10.8575 -0.3286 -0.2367 41 1 13.4760 -0.3921 0.4031 42 1 13.3010 -0.3938 -1.3683 43 1 18.7845 1.7341 -1.0163 44 1 4.4102 -1.4476 -0.0132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746570816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -103.521213 kcal Electronic energy + Delta-G solvation = -25136.746647 eV Core-core repulsion = 21180.382054 eV Total energy + Delta-G solvation = -3956.364593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.56423 -40.85209 -40.44352 -37.98202 -35.61331 -34.57190 -34.15308 -33.61487 -32.61780 -30.80246 -28.18585 -27.74757 -27.40435 -26.51012 -24.21759 -22.16240 -21.83233 -21.61092 -20.74219 -19.78611 -18.73352 -17.78722 -17.61451 -17.34435 -17.16924 -16.86726 -16.80790 -16.59648 -16.32934 -15.79973 -15.43838 -15.31020 -14.80318 -14.47584 -14.38715 -14.23122 -14.03963 -13.93331 -13.79318 -13.77021 -13.64612 -13.32344 -13.15689 -12.85163 -12.70227 -12.62923 -12.20206 -12.16929 -11.87263 -11.73169 -11.27822 -11.11589 -10.95661 -10.87635 -10.25907 -10.20499 -10.10677 -9.55374 -8.65658 -8.33238 -6.11593 0.32476 1.00824 1.27864 1.45030 1.47988 1.57219 1.63151 1.86091 2.00048 2.28304 2.28606 2.39415 3.01025 3.33610 3.55434 3.64401 3.71767 3.78049 3.84935 4.01858 4.06231 4.32206 4.39424 4.39725 4.49632 4.52996 4.53254 4.72200 4.73498 4.77382 4.77911 4.88154 4.88730 4.96998 5.10627 5.14812 5.28733 5.37498 5.39233 5.42746 5.45811 5.99797 6.20773 6.46915 6.52886 7.07987 7.14970 7.26971 8.75752 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.037674 B = 0.001415 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.033582 B =19784.792293 C =20348.927666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.009 4.009 3 C -0.197 4.197 4 C -0.266 4.266 5 C 0.584 3.416 6 O -0.588 6.588 7 N -0.705 5.705 8 C 0.129 3.871 9 C -0.094 4.094 10 H 0.111 0.889 11 C -0.151 4.151 12 C 0.125 3.875 13 N -0.707 5.707 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.128 4.128 17 S -0.156 6.156 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.261 1.261 26 C 0.048 3.952 27 O -0.177 6.177 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.150 0.850 32 H 0.417 0.583 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.418 0.582 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.584 -13.193 2.908 38.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 C -0.217 4.217 4 C -0.270 4.270 5 C 0.373 3.627 6 O -0.470 6.470 7 N -0.357 5.357 8 C 0.005 3.995 9 C -0.113 4.113 10 H 0.129 0.871 11 C -0.209 4.209 12 C 0.001 3.999 13 N -0.362 5.362 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.280 4.280 17 S 0.071 5.929 18 C -0.695 4.695 19 H 0.103 0.897 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.023 4.023 27 O -0.072 6.072 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.168 0.832 32 H 0.255 0.745 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.256 0.744 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -35.379 -10.510 2.881 37.019 hybrid contribution 1.082 -1.772 -0.071 2.077 sum -34.297 -12.282 2.809 36.538 Atomic orbital electron populations 1.20526 0.82279 1.05464 1.04928 1.22844 0.95472 0.82850 1.04575 1.22644 0.90755 1.00212 1.08055 1.21461 0.93948 0.94591 1.17017 1.17582 0.83300 0.86604 0.75220 1.90786 1.87859 1.16050 1.52271 1.45569 1.04260 1.11087 1.74818 1.21209 0.82477 0.93595 1.02245 1.21423 0.90905 0.97308 1.01641 0.87077 1.21935 1.03520 1.00153 0.95267 1.21276 0.84144 0.92771 1.01736 1.45636 1.04537 1.11242 1.74778 1.20096 0.84678 0.88240 0.75223 1.90707 1.86071 1.17367 1.50521 1.23367 0.95754 1.01993 1.06858 1.85639 0.97469 1.13681 1.96107 1.23185 0.93915 0.94072 1.58289 0.89741 1.26129 1.00218 0.98977 0.93775 1.70186 1.17641 1.19346 1.47709 0.85009 0.76114 0.77397 0.79504 1.18585 1.20550 1.18589 1.25157 0.84925 0.94730 0.97439 1.83774 1.16961 1.35665 1.70843 0.88665 0.89063 0.88097 0.83230 0.74514 0.91995 0.91998 0.90054 0.91191 0.93162 0.92411 0.92314 0.74407 0.86995 0.87006 0.92037 0.72763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.40 71.23 0.74 0.42 16 2 C -0.01 -0.10 7.28 24.76 0.18 0.08 16 3 C -0.20 -3.22 10.90 23.65 0.26 -2.97 16 4 C -0.27 -4.14 6.31 -18.99 -0.12 -4.26 16 5 C 0.58 11.56 7.81 86.65 0.68 12.24 16 6 O -0.59 -17.74 16.98 -4.08 -0.07 -17.81 16 7 N -0.70 -8.30 5.27 -466.43 -2.46 -10.76 16 8 C 0.13 1.88 5.06 86.38 0.44 2.32 16 9 C -0.09 -0.99 2.46 -10.80 -0.03 -1.02 16 10 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 11 C -0.15 -1.24 8.94 71.98 0.64 -0.60 16 12 C 0.13 2.48 5.07 86.38 0.44 2.92 16 13 N -0.71 -15.71 5.28 -463.06 -2.45 -18.15 16 14 C 0.53 18.83 7.85 87.65 0.69 19.52 16 15 O -0.57 -26.17 15.86 -3.04 -0.05 -26.22 16 16 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 17 S -0.16 -8.60 20.57 -56.49 -1.16 -9.76 16 18 C -0.55 -30.86 9.50 67.95 0.65 -30.21 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.78 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 22 Si 1.00 43.05 29.55 68.60 2.03 45.07 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 26 C 0.05 0.37 11.61 67.39 0.78 1.16 16 27 O -0.18 -1.92 10.52 4.52 0.05 -1.87 16 28 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.42 1.43 6.63 -92.71 -0.61 0.81 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.08 0.28 7.18 -2.39 -0.02 0.26 16 36 H 0.07 0.53 7.18 -2.38 -0.02 0.51 16 37 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.42 5.94 7.66 -92.70 -0.71 5.23 16 41 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 42 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.26 -0.78 7.47 -2.91 -0.02 -0.80 16 Total: -1.00 -90.27 393.29 2.13 -88.14 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -0.29 Total: 10.70 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 6.25 Total: -3.62 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -4.62 Total: -84.63 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.07 Total: -45.90 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -90.27 2.13 -88.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746570816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.381 kcal (2) G-P(sol) polarization free energy of solvation -90.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds