Wall clock time and date at job start Sat Apr 11 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34171 * 125.43876 * 2 1 4 4 C 1.47019 * 105.95871 * 180.02562 * 3 2 1 5 5 C 1.47377 * 127.19722 * 180.02562 * 4 3 2 6 6 O 1.21614 * 120.00026 * 187.41648 * 5 4 3 7 7 N 1.34776 * 119.99895 * 7.40695 * 5 4 3 8 8 C 1.46499 * 120.00190 * 6.26140 * 7 5 4 9 9 C 1.46502 * 120.00005 * 186.26031 * 7 5 4 10 10 C 1.52997 * 109.47311 * 270.00357 * 9 7 5 11 11 N 1.46493 * 109.47133 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00152 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99688 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00238 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47334 * 180.02562 * 14 12 11 16 16 C 1.76195 * 100.00239 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00094 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00199 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99444 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00036 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46688 * 90.00363 * 20 18 16 22 22 H 1.48497 * 109.46806 * 210.00003 * 20 18 16 23 23 H 1.48499 * 109.47104 * 330.00115 * 20 18 16 24 24 C 1.36417 * 105.61025 * 0.26253 * 4 3 2 25 25 C 1.50701 * 125.79970 * 179.73547 * 24 4 3 26 26 O 1.33650 * 108.39839 * 359.57687 * 24 4 3 27 27 H 1.08997 * 109.47371 * 89.99700 * 1 2 3 28 28 H 1.08998 * 109.47298 * 209.99648 * 1 2 3 29 29 H 1.09008 * 109.47266 * 329.99869 * 1 2 3 30 30 H 1.08002 * 127.02238 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47197 * 275.86325 * 8 7 5 32 32 H 1.09005 * 109.46820 * 35.85613 * 8 7 5 33 33 H 1.08995 * 109.47152 * 155.85263 * 8 7 5 34 34 H 1.09004 * 109.47135 * 149.99832 * 9 7 5 35 35 H 1.09005 * 109.46860 * 30.00220 * 9 7 5 36 36 H 1.09005 * 109.46630 * 300.00085 * 10 9 7 37 37 H 1.08995 * 109.46943 * 59.99373 * 10 9 7 38 38 H 0.96995 * 120.00483 * 359.97438 * 11 10 9 39 39 H 1.09005 * 109.47401 * 300.00006 * 14 12 11 40 40 H 1.08994 * 109.47185 * 59.99982 * 14 12 11 41 41 H 0.97005 * 119.99548 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.47057 * 90.00764 * 25 24 4 43 43 H 1.09004 * 109.46680 * 210.00065 * 25 24 4 44 44 H 1.08997 * 109.47267 * 330.00126 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6029 -0.0006 5 6 4.9025 1.4125 -0.0003 6 8 5.9843 0.8739 -0.1369 7 7 4.8297 2.7497 0.1511 8 6 3.5439 3.3840 0.4520 9 6 6.0365 3.5691 0.0146 10 6 6.7152 3.7085 1.3787 11 7 7.9222 4.5274 1.2422 12 6 8.6864 4.7866 2.3217 13 8 8.3749 4.3417 3.4061 14 6 9.9283 5.6285 2.1811 15 16 10.7312 5.7936 3.7949 16 6 12.1112 6.7943 3.3492 17 1 12.2423 7.1077 2.3240 18 6 13.0299 7.1798 4.3157 19 7 12.8703 6.7974 5.5650 20 14 14.4933 8.2402 3.8430 21 1 14.1284 9.6737 3.9734 22 1 15.6356 7.9363 4.7419 23 1 14.8791 7.9533 2.4379 24 6 3.5789 -0.7582 -0.0070 25 6 4.7389 -1.7202 -0.0157 26 8 2.2852 -1.0935 -0.0006 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.9595 2.1230 -0.0004 31 1 2.9951 3.5506 -0.4749 32 1 2.9627 2.7343 1.1066 33 1 3.7171 4.3387 0.9485 34 1 5.7649 4.5565 -0.3588 35 1 6.7224 3.0919 -0.6854 36 1 6.0292 4.1857 2.0787 37 1 6.9866 2.7212 1.7521 38 1 8.1715 4.8830 0.3749 39 1 10.6142 5.1503 1.4818 40 1 9.6576 6.6157 1.8069 41 1 13.5126 7.0665 6.2404 42 1 5.0220 -1.9572 1.0099 43 1 4.4486 -2.6346 -0.5330 44 1 5.5850 -1.2646 -0.5302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758913939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:58 Heat of formation + Delta-G solvation = -48.873500 kcal Electronic energy + Delta-G solvation = -25955.616823 eV Core-core repulsion = 22001.621932 eV Total energy + Delta-G solvation = -3953.994891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.03041 -40.05467 -39.01102 -36.33937 -34.62433 -33.49138 -33.27527 -32.40885 -30.66151 -29.77907 -28.39621 -27.33171 -25.51902 -25.25365 -23.91250 -22.49242 -21.34906 -20.34697 -18.82066 -17.84592 -17.49425 -16.93319 -16.60112 -16.36570 -16.27961 -15.69728 -15.32203 -15.07045 -14.78468 -14.50262 -14.06489 -13.91766 -13.82754 -13.79716 -13.59246 -13.40134 -13.30951 -13.12291 -13.01820 -12.90622 -12.53515 -12.26859 -12.15087 -12.02680 -11.82676 -11.35531 -11.04602 -11.00443 -10.75042 -10.23539 -10.10227 -9.80176 -9.43402 -9.11029 -9.05172 -8.87267 -8.72502 -8.21065 -6.47725 -6.19651 -3.90050 0.99979 1.59120 2.28255 2.52318 3.01643 3.12781 3.13875 3.23872 3.30177 3.36661 3.80991 4.01140 4.22369 4.25000 4.40482 4.69308 4.70942 4.71942 4.78361 4.85194 4.93342 5.01984 5.03644 5.15450 5.17864 5.19176 5.20184 5.23325 5.28457 5.33844 5.53751 5.64599 5.72104 5.80620 5.87870 5.91780 5.93464 6.15349 6.17143 6.61778 6.66411 7.00855 7.61521 7.71410 7.86997 8.37229 8.64027 9.25575 10.87798 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030874 B = 0.001679 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.697732 B =16675.222107 C =16922.566168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.015 4.015 3 C -0.199 4.199 4 C -0.244 4.244 5 C 0.591 3.409 6 O -0.533 6.533 7 N -0.607 5.607 8 C 0.068 3.932 9 C 0.109 3.891 10 C 0.107 3.893 11 N -0.737 5.737 12 C 0.533 3.467 13 O -0.517 6.517 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.082 3.918 25 C -0.086 4.086 26 O -0.175 6.175 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.170 0.830 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.105 -11.860 -16.533 33.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.218 4.218 4 C -0.248 4.248 5 C 0.382 3.618 6 O -0.411 6.411 7 N -0.340 5.340 8 C -0.075 4.075 9 C -0.014 4.014 10 C -0.018 4.018 11 N -0.392 5.392 12 C 0.319 3.681 13 O -0.391 6.391 14 C -0.303 4.303 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C 0.029 3.971 25 C -0.142 4.142 26 O -0.072 6.072 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.187 0.813 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -27.117 -13.168 -14.594 33.492 hybrid contribution 1.298 1.697 -1.902 2.860 sum -25.819 -11.471 -16.496 32.716 Atomic orbital electron populations 1.20346 0.84671 1.04334 1.03712 1.22342 0.94065 0.83763 1.06186 1.23227 0.90664 1.00042 1.07832 1.21013 0.93752 0.93209 1.16854 1.17259 0.87426 0.81285 0.75862 1.90786 1.29107 1.71118 1.50066 1.47404 1.09123 1.06133 1.71368 1.22384 0.85025 0.99188 1.00908 1.21608 0.86846 0.95543 0.97432 1.21570 0.86813 0.96445 0.96979 1.45835 1.26583 1.55143 1.11654 1.20304 0.84029 0.80173 0.83625 1.90706 1.71311 1.50752 1.26284 1.23525 0.97227 1.01334 1.08244 1.85412 1.27508 1.67921 1.02557 1.22874 1.10907 1.37020 0.97579 0.90907 1.24995 0.98001 0.96133 0.94474 1.70023 1.36055 1.43262 1.00947 0.86162 0.80816 0.80011 0.78470 1.20290 1.20757 1.19696 1.22821 0.82893 0.94035 0.97305 1.20679 0.92146 0.96745 1.04656 1.83708 1.16189 1.35768 1.71507 0.89940 0.90384 0.89081 0.81276 0.92126 0.89796 0.90547 0.89652 0.89066 0.91643 0.91082 0.76814 0.89125 0.89176 0.92200 0.89165 0.90298 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.40 36.01 0.37 0.12 16 2 C -0.02 -0.11 7.28 -35.74 -0.26 -0.37 16 3 C -0.20 -1.50 8.75 -37.46 -0.33 -1.82 16 4 C -0.24 -2.52 6.06 -103.28 -0.63 -3.15 16 5 C 0.59 7.04 7.64 -12.54 -0.10 6.94 16 6 O -0.53 -7.85 14.47 5.27 0.08 -7.77 16 7 N -0.61 -5.78 2.87 -182.87 -0.53 -6.31 16 8 C 0.07 0.41 8.66 59.85 0.52 0.92 16 9 C 0.11 1.02 5.45 -4.04 -0.02 1.00 16 10 C 0.11 1.38 6.00 -4.05 -0.02 1.36 16 11 N -0.74 -10.23 5.56 -60.30 -0.34 -10.56 16 12 C 0.53 10.31 7.85 -10.99 -0.09 10.23 16 13 O -0.52 -12.26 15.86 5.56 0.09 -12.17 16 14 C -0.15 -3.14 6.16 36.00 0.22 -2.91 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 16 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 20 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.08 0.82 7.37 -34.96 -0.26 0.56 16 25 C -0.09 -0.71 9.97 36.01 0.36 -0.35 16 26 O -0.17 -1.62 10.52 7.66 0.08 -1.54 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.16 8.14 -51.92 -0.42 -0.27 16 30 H 0.17 0.81 4.88 -52.49 -0.26 0.55 16 31 H 0.06 0.26 7.34 -51.93 -0.38 -0.12 16 32 H 0.08 0.49 5.37 -51.93 -0.28 0.21 16 33 H 0.08 0.39 8.03 -51.93 -0.42 -0.03 16 34 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.09 0.93 7.52 -51.93 -0.39 0.54 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 39 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.11 1.08 6.37 -51.93 -0.33 0.75 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -38.54 385.97 -7.50 -46.03 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.17 Total: 0.12 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -0.03 Total: -0.59 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.13 Total: -42.56 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.24 Total: -21.48 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.54 -7.50 -46.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758913939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.841 kcal (2) G-P(sol) polarization free energy of solvation -38.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds