Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 N 1.46503 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99637 * 266.64714 * 4 3 2 6 6 H 1.07996 * 120.00443 * 338.17235 * 5 4 3 7 7 C 1.38820 * 119.99498 * 158.16549 * 5 4 3 8 8 N 1.31612 * 120.00213 * 5.19611 * 7 5 4 9 9 Si 1.86798 * 119.99581 * 185.19598 * 7 5 4 10 10 H 1.48501 * 109.47459 * 60.00235 * 9 7 5 11 11 H 1.48502 * 109.47038 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47202 * 299.99999 * 9 7 5 13 13 C 1.46500 * 120.00136 * 86.65162 * 4 3 2 14 14 C 1.50700 * 109.46821 * 269.99834 * 13 4 3 15 15 O 1.21285 * 120.00483 * 0.02562 * 14 13 4 16 16 N 1.34783 * 120.00119 * 179.97438 * 14 13 4 17 17 C 1.39918 * 120.00153 * 185.12974 * 16 14 13 18 18 C 1.38872 * 120.06981 * 33.48479 * 17 16 14 19 19 C 1.38114 * 119.93124 * 180.02562 * 18 17 16 20 20 C 1.38276 * 120.06836 * 0.02562 * 19 18 17 21 21 S 1.76203 * 119.93061 * 179.97438 * 20 19 18 22 22 C 1.81391 * 104.45227 * 89.99666 * 21 20 19 23 23 O 1.42099 * 104.27359 * 333.92198 * 21 20 19 24 24 O 1.42103 * 104.27508 * 206.06887 * 21 20 19 25 25 C 1.38289 * 120.14379 * 0.25118 * 20 19 18 26 26 C 1.38116 * 120.06548 * 359.49092 * 25 20 19 27 27 H 1.09000 * 109.46983 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47119 * 299.99978 * 1 2 3 29 29 H 1.08992 * 109.47589 * 60.00083 * 1 2 3 30 30 H 1.09002 * 109.47119 * 240.00022 * 2 1 3 31 31 H 1.08999 * 109.47396 * 119.99590 * 2 1 3 32 32 H 1.08993 * 109.47189 * 59.99773 * 3 2 1 33 33 H 1.09000 * 109.47092 * 299.99878 * 3 2 1 34 34 H 0.97001 * 120.00037 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47144 * 150.00210 * 13 4 3 36 36 H 1.08997 * 109.47089 * 29.99561 * 13 4 3 37 37 H 0.96994 * 119.99487 * 5.13521 * 16 14 13 38 38 H 1.07996 * 120.03543 * 359.97438 * 18 17 16 39 39 H 1.08001 * 119.96607 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47298 * 60.00186 * 22 21 20 41 41 H 1.09006 * 109.47313 * 300.00194 * 22 21 20 42 42 H 1.09000 * 109.47432 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.96441 * 179.74813 * 25 20 19 44 44 H 1.07998 * 120.03264 * 180.25299 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5117 1.1830 6 1 3.7086 1.9114 2.0632 7 6 5.5036 1.0678 1.2516 8 7 6.1239 0.6762 0.1588 9 14 6.3909 1.0264 2.8949 10 1 5.6609 0.1323 3.8292 11 1 7.7720 0.5170 2.6991 12 1 6.4454 2.3975 3.4627 13 6 4.2370 1.3686 -1.2675 14 6 4.4880 -0.0752 -1.6190 15 8 4.0939 -0.9557 -0.8840 16 7 5.1497 -0.3880 -2.7508 17 6 5.2894 -1.7269 -3.1323 18 6 4.2816 -2.6397 -2.8497 19 6 4.4226 -3.9608 -3.2271 20 6 5.5661 -4.3750 -3.8851 21 16 5.7426 -6.0614 -4.3643 22 6 5.0299 -6.1355 -6.0306 23 8 4.9299 -6.7745 -3.4421 24 8 7.1479 -6.2665 -4.4134 25 6 6.5740 -3.4698 -4.1628 26 6 6.4366 -2.1462 -3.7928 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 7.0418 0.3664 0.2067 35 1 5.1895 1.8891 -1.1677 36 1 3.6476 1.8372 -2.0555 37 1 5.5291 0.3151 -3.3008 38 1 3.3888 -2.3170 -2.3348 39 1 3.6394 -4.6712 -3.0073 40 1 5.5798 -5.4652 -6.6912 41 1 3.9840 -5.8307 -5.9924 42 1 5.0978 -7.1552 -6.4099 43 1 7.4676 -3.7973 -4.6733 44 1 7.2223 -1.4389 -4.0136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058911312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -46.690673 kcal Electronic energy + Delta-G solvation = -27981.191432 eV Core-core repulsion = 24027.291195 eV Total energy + Delta-G solvation = -3953.900236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -39.82586 -37.96174 -37.08030 -35.94214 -35.79048 -33.88943 -32.97792 -30.82087 -30.67730 -29.95423 -29.46984 -27.02137 -25.57979 -23.18886 -22.73136 -21.91378 -20.26801 -19.54252 -18.99075 -17.87004 -17.32938 -16.60433 -16.23618 -16.16340 -15.66432 -15.25955 -14.59349 -14.43714 -14.25004 -13.90544 -13.66834 -13.46757 -13.36995 -13.29914 -13.10028 -12.97478 -12.80734 -12.54967 -12.27001 -12.07190 -11.96571 -11.58538 -11.28187 -11.19774 -11.14710 -11.03186 -10.83705 -10.66776 -10.63445 -10.45577 -10.22268 -10.02757 -9.85749 -9.61877 -8.98034 -8.79248 -8.43616 -7.84742 -6.94995 -5.93000 -3.31484 0.06310 1.09850 1.56287 2.91063 3.34456 3.41647 3.43206 3.53131 3.74903 3.94487 4.08433 4.20715 4.46695 4.58514 4.75532 5.00817 5.06434 5.27445 5.40691 5.41506 5.49561 5.63574 5.73241 5.76244 5.80875 6.00084 6.09207 6.16075 6.19284 6.23981 6.35480 6.40682 6.50385 6.54611 6.61291 6.74584 6.86442 7.03950 7.13960 7.32045 7.41043 7.65155 8.13627 8.30613 9.06779 9.40293 9.70935 10.15145 11.15689 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.003254 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.297639 B = 8601.909843 C = 9497.094320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.149 3.851 4 N -0.577 5.577 5 C -0.241 4.241 6 H 0.075 0.925 7 C 0.006 3.994 8 N -0.917 5.917 9 Si 0.915 3.085 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.285 1.285 13 C 0.169 3.831 14 C 0.527 3.473 15 O -0.505 6.505 16 N -0.690 5.690 17 C 0.242 3.758 18 C -0.152 4.152 19 C -0.005 4.005 20 C -0.699 4.699 21 S 2.506 3.494 22 C -0.652 4.652 23 O -0.943 6.943 24 O -0.946 6.946 25 C -0.003 4.003 26 C -0.185 4.185 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.256 0.744 35 H 0.119 0.881 36 H 0.032 0.968 37 H 0.403 0.597 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.528 -5.185 -15.487 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.023 3.977 4 N -0.295 5.295 5 C -0.370 4.370 6 H 0.093 0.907 7 C -0.190 4.190 8 N -0.564 5.564 9 Si 0.745 3.255 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.211 1.211 13 C 0.038 3.962 14 C 0.315 3.685 15 O -0.376 6.376 16 N -0.334 5.334 17 C 0.142 3.858 18 C -0.174 4.174 19 C -0.024 4.024 20 C -0.789 4.789 21 S 2.687 3.313 22 C -0.802 4.802 23 O -0.941 6.941 24 O -0.943 6.943 25 C -0.023 4.023 26 C -0.207 4.207 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.137 0.863 36 H 0.050 0.950 37 H 0.237 0.763 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.154 0.846 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.365 -6.364 -14.324 16.032 hybrid contribution 0.642 0.737 0.316 1.028 sum -2.723 -5.627 -14.008 15.340 Atomic orbital electron populations 1.21785 0.98044 1.00331 1.00514 1.22146 0.92598 1.00252 1.02853 1.20977 0.84131 0.94038 0.98604 1.43812 0.99785 1.83687 1.02255 1.19259 0.95017 1.34034 0.88663 0.90682 1.24889 0.97925 0.98748 0.97408 1.69511 1.12131 1.48801 1.25972 0.86169 0.78477 0.77625 0.83241 1.21055 1.21687 1.21109 1.20693 0.98931 0.89947 0.86600 1.22666 0.74212 0.94707 0.76865 1.90540 1.49819 1.50095 1.47134 1.44503 1.58077 1.04383 1.26457 1.18277 0.91649 0.86105 0.89734 1.21294 1.00035 0.93034 1.03013 1.20716 0.94787 0.95752 0.91191 1.30032 1.04627 1.23728 1.20490 1.04799 0.74923 0.74613 0.76954 1.30256 1.14369 1.11216 1.24332 1.93571 1.70699 1.71034 1.58764 1.93559 1.28843 1.84915 1.86967 1.20582 0.95846 0.91994 0.93910 1.21009 0.97025 0.96592 1.06107 0.93887 0.93528 0.93772 0.92312 0.92030 0.93349 0.94822 0.93298 0.86313 0.95010 0.76267 0.84044 0.84588 0.85166 0.85109 0.85538 0.84576 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.14 -2.70 5.36 -26.73 -0.14 -2.84 16 3 C 0.15 2.96 5.71 -4.04 -0.02 2.94 16 4 N -0.58 -13.47 2.10 -174.61 -0.37 -13.84 16 5 C -0.24 -6.29 9.70 -15.06 -0.15 -6.43 16 6 H 0.08 1.93 7.80 -52.49 -0.41 1.52 16 7 C 0.01 0.17 5.39 -17.43 -0.09 0.08 16 8 N -0.92 -24.41 8.15 55.49 0.45 -23.96 16 9 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.17 3.59 5.47 -5.19 -0.03 3.57 16 14 C 0.53 11.29 5.26 -10.98 -0.06 11.24 16 15 O -0.50 -12.65 11.42 5.55 0.06 -12.59 16 16 N -0.69 -11.98 5.34 -9.86 -0.05 -12.03 16 17 C 0.24 4.12 6.28 -83.70 -0.53 3.60 16 18 C -0.15 -2.65 8.66 -39.39 -0.34 -2.99 16 19 C 0.00 -0.07 9.46 -39.61 -0.37 -0.44 16 20 C -0.70 -9.37 5.66 -39.55 -0.22 -9.59 16 21 S 2.51 27.57 5.80 -107.50 -0.62 26.94 16 22 C -0.65 -3.89 10.79 101.05 1.09 -2.80 16 23 O -0.94 -13.70 17.12 -57.54 -0.98 -14.69 16 24 O -0.95 -13.18 17.11 -57.54 -0.98 -14.17 16 25 C 0.00 -0.05 9.46 -39.61 -0.37 -0.42 16 26 C -0.19 -2.70 9.96 -39.39 -0.39 -3.09 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.23 6.39 -51.93 -0.33 0.89 16 31 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.05 0.94 7.99 -51.93 -0.41 0.53 16 33 H 0.03 0.60 7.94 -51.93 -0.41 0.18 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.12 2.73 6.30 -51.93 -0.33 2.40 16 36 H 0.03 0.58 7.92 -51.93 -0.41 0.17 16 37 H 0.40 5.63 8.82 -40.82 -0.36 5.27 16 38 H 0.14 2.68 6.42 -52.49 -0.34 2.35 16 39 H 0.14 1.78 7.56 -52.49 -0.40 1.39 16 40 H 0.13 0.58 8.14 -51.92 -0.42 0.15 16 41 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.13 0.55 8.14 -51.92 -0.42 0.12 16 43 H 0.14 1.48 7.56 -52.49 -0.40 1.08 16 44 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -35.33 373.09 -9.48 -44.81 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.31 Total: 6.15 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.27 Total: -9.11 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.03 Total: -49.82 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.91 Total: -41.44 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 27.57 SS G_CDS: -0.62 Total: 26.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.33 -9.48 -44.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058911312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.883 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds