Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47269 * 2 1 4 4 H 1.09000 * 109.47364 * 55.35373 * 3 2 1 5 5 C 1.53002 * 109.47057 * 295.35749 * 3 2 1 6 6 C 1.53002 * 109.47286 * 175.35710 * 3 2 1 7 7 H 1.08998 * 109.46978 * 305.55547 * 6 3 2 8 8 N 1.46497 * 109.46942 * 185.55630 * 6 3 2 9 9 S 1.65598 * 119.99950 * 144.99790 * 8 6 3 10 10 O 1.42108 * 106.40333 * 311.46035 * 9 8 6 11 11 O 1.42100 * 106.40624 * 178.53992 * 9 8 6 12 12 C 1.76205 * 107.21871 * 64.99854 * 9 8 6 13 13 C 1.38628 * 119.74641 * 89.99960 * 12 9 8 14 14 C 1.37625 * 120.24757 * 180.23340 * 13 12 9 15 15 C 1.40714 * 119.74070 * 359.52146 * 14 13 12 16 16 C 1.41400 * 120.24341 * 180.22866 * 15 14 13 17 17 H 1.08004 * 119.99855 * 207.96254 * 16 15 14 18 18 C 1.39941 * 119.99858 * 27.95898 * 16 15 14 19 19 N 1.30831 * 120.00153 * 11.21999 * 18 16 15 20 20 Si 1.86806 * 120.00229 * 191.21794 * 18 16 15 21 21 H 1.48494 * 109.47073 * 90.00052 * 20 18 16 22 22 H 1.48496 * 109.47238 * 210.00470 * 20 18 16 23 23 H 1.48498 * 109.46758 * 330.00100 * 20 18 16 24 24 C 1.40716 * 119.51558 * 0.47536 * 15 14 13 25 25 C 1.37618 * 119.74172 * 359.75444 * 24 15 14 26 26 C 1.50694 * 109.47282 * 65.55744 * 6 3 2 27 27 N 1.34779 * 119.99700 * 275.11675 * 26 6 3 28 28 O 1.21282 * 120.00410 * 95.10905 * 26 6 3 29 29 H 1.09005 * 109.47647 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47347 * 299.99757 * 1 2 3 31 31 H 1.09000 * 109.47434 * 60.00052 * 1 2 3 32 32 H 1.09005 * 109.46828 * 239.99687 * 2 1 3 33 33 H 1.09003 * 109.46897 * 120.00469 * 2 1 3 34 34 H 1.09010 * 109.46872 * 299.99996 * 5 3 2 35 35 H 1.08997 * 109.47355 * 59.99796 * 5 3 2 36 36 H 1.09001 * 109.47415 * 180.02562 * 5 3 2 37 37 H 0.96997 * 120.00328 * 324.99747 * 8 6 3 38 38 H 1.08002 * 119.88328 * 359.95885 * 13 12 9 39 39 H 1.07996 * 120.13125 * 179.72132 * 14 13 12 40 40 H 0.97000 * 119.99494 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.13278 * 179.72699 * 24 15 14 42 42 H 1.07996 * 119.87683 * 179.97438 * 25 24 15 43 43 H 0.96998 * 120.00313 * 4.77253 * 27 26 6 44 44 H 0.97009 * 119.99692 * 184.77747 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6103 1.9798 0.8454 5 6 1.6276 2.1292 -1.3035 6 6 3.5655 1.4440 0.1168 7 1 3.8634 0.8696 0.9939 8 7 4.0436 2.8223 0.2502 9 16 5.3581 3.1544 1.2011 10 8 5.1343 2.4945 2.4397 11 8 5.5866 4.5529 1.0959 12 6 6.7494 2.3658 0.4615 13 6 7.5103 3.0492 -0.4743 14 6 8.5964 2.4416 -1.0620 15 6 8.9392 1.1251 -0.7021 16 6 10.0557 0.4923 -1.2957 17 1 10.0772 -0.5829 -1.3952 18 6 11.1327 1.2593 -1.7541 19 7 11.2126 2.5273 -1.4421 20 14 12.4565 0.4725 -2.8116 21 1 12.0827 0.5930 -4.2436 22 1 13.7510 1.1616 -2.5781 23 1 12.5881 -0.9626 -2.4534 24 6 8.1596 0.4411 0.2490 25 6 7.0751 1.0669 0.8202 26 6 4.1645 0.8219 -1.1182 27 7 4.2991 -0.5166 -1.2010 28 8 4.5254 1.5257 -2.0377 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0573 1.5918 -2.1491 35 1 0.5408 2.1281 -1.3868 36 1 1.9913 3.1567 -1.3038 37 1 3.5903 3.5405 -0.2184 38 1 7.2473 4.0607 -0.7466 39 1 9.1851 2.9741 -1.7942 40 1 11.9593 3.0587 -1.7596 41 1 8.4111 -0.5711 0.5293 42 1 6.4751 0.5438 1.5500 43 1 3.9480 -1.0838 -0.4969 44 1 4.7472 -0.9126 -1.9648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080711345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -141.543346 kcal Electronic energy + Delta-G solvation = -28710.314181 eV Core-core repulsion = 24752.300825 eV Total energy + Delta-G solvation = -3958.013357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.06035 -39.36967 -38.21542 -37.63747 -36.84773 -35.77017 -34.96052 -34.33573 -32.04827 -31.29545 -30.40104 -28.04178 -27.60551 -24.75827 -23.28951 -22.99277 -22.28301 -20.68782 -20.46143 -19.42286 -18.91790 -18.57121 -18.10255 -17.49300 -17.20334 -16.76321 -16.40004 -15.94672 -15.77715 -15.56477 -15.14529 -14.97265 -14.76961 -14.65888 -14.10677 -13.95997 -13.91040 -13.59517 -13.32349 -13.17593 -13.09278 -12.94584 -12.91645 -12.87857 -12.72595 -12.58974 -12.49106 -12.03948 -11.87771 -11.80642 -11.56634 -11.50336 -11.43021 -11.26734 -11.12616 -10.47372 -10.24480 -9.73211 -9.52452 -8.80741 -6.65351 -0.38487 0.48500 1.07107 1.34394 1.41960 1.49801 1.70717 2.10279 2.15238 2.51294 2.72056 2.89970 3.45922 3.54458 3.70679 3.82439 3.92314 4.11819 4.23296 4.27945 4.32701 4.48921 4.66363 4.74589 4.75092 4.84273 4.87400 4.95079 5.07620 5.11191 5.19407 5.23578 5.24477 5.28802 5.49067 5.53809 5.56634 5.59263 5.76575 5.94058 6.00461 6.03544 6.16153 6.51630 6.57363 6.69943 6.82654 7.47078 8.13135 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016123 B = 0.003696 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.188501 B = 7573.708019 C = 8475.574223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.153 4.153 6 C 0.132 3.868 7 H 0.125 0.875 8 N -1.091 6.091 9 S 2.719 3.281 10 O -0.987 6.987 11 O -1.005 7.005 12 C -0.788 4.788 13 C -0.018 4.018 14 C -0.202 4.202 15 C 0.115 3.885 16 C -0.469 4.469 17 H 0.094 0.906 18 C 0.028 3.972 19 N -0.811 5.811 20 Si 0.995 3.005 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.250 1.250 24 C -0.244 4.244 25 C -0.001 4.001 26 C 0.503 3.497 27 N -0.839 5.839 28 O -0.568 6.568 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.424 0.576 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.295 0.705 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.415 0.585 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.021 -8.095 0.817 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.104 4.104 4 H 0.124 0.876 5 C -0.210 4.210 6 C 0.021 3.979 7 H 0.143 0.857 8 N -0.849 5.849 9 S 2.815 3.185 10 O -0.977 6.977 11 O -0.996 6.996 12 C -0.881 4.881 13 C -0.038 4.038 14 C -0.223 4.223 15 C 0.112 3.888 16 C -0.497 4.497 17 H 0.112 0.888 18 C -0.189 4.189 19 N -0.435 5.435 20 Si 0.814 3.186 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.173 1.173 24 C -0.264 4.264 25 C -0.020 4.020 26 C 0.286 3.714 27 N -0.405 5.405 28 O -0.445 6.445 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.260 0.740 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.135 0.865 42 H 0.150 0.850 43 H 0.247 0.753 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.641 -6.886 1.215 18.051 hybrid contribution 1.334 -0.249 -1.339 1.906 sum -15.307 -7.136 -0.124 16.889 Atomic orbital electron populations 1.21771 0.94262 1.02428 1.02223 1.21771 0.97554 0.93940 1.03557 1.21439 0.89028 0.99453 1.00516 0.87620 1.21946 1.02463 1.00340 0.96297 1.21095 0.97732 0.82470 0.96610 0.85740 1.55250 1.47520 1.14427 1.67731 1.00514 0.72705 0.72156 0.73119 1.93475 1.85841 1.76939 1.41447 1.93469 1.85981 1.32710 1.87443 1.29611 1.25540 1.09170 1.23825 1.20355 0.93682 0.96863 0.92932 1.21359 0.98826 0.97951 1.04151 1.18200 0.90816 0.91897 0.87898 1.20210 1.00558 0.95989 1.32925 0.88819 1.27060 1.01800 0.94948 0.95129 1.69874 1.30288 1.08917 1.34399 0.85001 0.75807 0.79676 0.78107 1.18622 1.19174 1.17271 1.21260 1.01148 1.01239 1.02791 1.20425 0.95136 0.91743 0.94725 1.21320 0.77571 0.83348 0.89197 1.43815 1.61591 1.06655 1.28425 1.90741 1.50379 1.62599 1.40826 0.91680 0.92116 0.92625 0.91181 0.89537 0.93804 0.89967 0.93076 0.73955 0.88060 0.87708 0.89444 0.86533 0.84984 0.75287 0.76479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.66 71.98 0.70 -0.78 16 2 C -0.13 -1.53 4.58 30.59 0.14 -1.39 16 3 C -0.08 -1.41 2.35 -10.79 -0.03 -1.44 16 4 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 5 C -0.15 -2.85 8.38 71.98 0.60 -2.24 16 6 C 0.13 3.17 2.48 44.24 0.11 3.28 16 7 H 0.12 2.62 7.50 -2.39 -0.02 2.61 16 8 N -1.09 -32.05 5.06 -172.53 -0.87 -32.93 16 9 S 2.72 103.67 5.71 -56.49 -0.32 103.35 16 10 O -0.99 -38.24 16.60 -128.00 -2.12 -40.36 16 11 O -1.01 -44.29 17.26 -128.00 -2.21 -46.50 16 12 C -0.79 -35.37 5.97 22.46 0.13 -35.24 16 13 C -0.02 -0.92 9.49 22.22 0.21 -0.71 16 14 C -0.20 -11.06 8.67 22.73 0.20 -10.86 16 15 C 0.12 6.10 5.56 -21.29 -0.12 5.98 16 16 C -0.47 -23.94 9.07 23.46 0.21 -23.72 16 17 H 0.09 4.43 7.87 -2.91 -0.02 4.40 16 18 C 0.03 1.35 5.25 85.25 0.45 1.80 16 19 N -0.81 -41.62 10.81 21.83 0.24 -41.39 16 20 Si 0.99 36.06 29.57 68.60 2.03 38.09 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 22 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 23 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 24 C -0.24 -11.39 9.80 22.73 0.22 -11.17 16 25 C 0.00 -0.02 9.49 22.22 0.21 0.19 16 26 C 0.50 14.08 5.56 87.65 0.49 14.57 16 27 N -0.84 -16.85 7.97 -173.53 -1.38 -18.23 16 28 O -0.57 -21.65 16.82 -3.04 -0.05 -21.70 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.57 6.55 -2.39 -0.02 0.56 16 32 H 0.07 0.84 6.56 -2.38 -0.02 0.82 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.04 0.98 6.72 -2.38 -0.02 0.97 16 35 H 0.08 1.16 6.55 -2.39 -0.02 1.14 16 36 H 0.05 1.03 6.76 -2.39 -0.02 1.01 16 37 H 0.42 11.24 7.36 -96.75 -0.71 10.53 16 38 H 0.10 4.97 7.60 -2.91 -0.02 4.95 16 39 H 0.10 5.98 6.18 -2.91 -0.02 5.96 16 40 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 41 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 42 H 0.13 4.69 7.60 -2.91 -0.02 4.67 16 43 H 0.42 5.10 7.92 -92.71 -0.73 4.36 16 44 H 0.40 8.18 8.93 -92.70 -0.83 7.36 16 Total: -1.00 -73.71 370.45 -2.38 -76.09 By element: Atomic # 1 Polarization: 46.51 SS G_CDS: -1.21 Total: 45.31 kcal Atomic # 6 Polarization: -65.25 SS G_CDS: 3.53 Total: -61.72 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -2.02 Total: -92.55 kcal Atomic # 8 Polarization: -104.19 SS G_CDS: -4.38 Total: -108.57 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Atomic # 16 Polarization: 103.67 SS G_CDS: -0.32 Total: 103.35 kcal Total: -73.71 -2.38 -76.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080711345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.455 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds