Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47087 * 2 1 4 4 C 1.53000 * 109.47072 * 119.99978 * 2 1 3 5 5 N 1.46504 * 109.47246 * 63.46179 * 4 2 1 6 6 C 1.46504 * 119.99971 * 65.75890 * 5 4 2 7 7 C 1.50699 * 109.46879 * 85.00355 * 6 5 4 8 8 N 1.34779 * 119.99752 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00285 * 359.97438 * 7 6 5 10 10 S 1.65606 * 120.00089 * 245.48809 * 5 4 2 11 11 O 1.42094 * 106.40093 * 209.64883 * 10 5 4 12 12 O 1.42098 * 106.39805 * 342.57006 * 10 5 4 13 13 C 1.76198 * 107.21783 * 96.10696 * 10 5 4 14 14 C 1.38636 * 119.74954 * 264.84650 * 13 10 5 15 15 C 1.37622 * 120.24527 * 179.72280 * 14 13 10 16 16 C 1.40715 * 119.74710 * 0.57373 * 15 14 13 17 17 C 1.41389 * 120.24683 * 179.68278 * 16 15 14 18 18 H 1.07997 * 120.00518 * 203.91376 * 17 16 15 19 19 C 1.39951 * 119.99962 * 23.90823 * 17 16 15 20 20 N 1.30825 * 119.99876 * 17.60140 * 19 17 16 21 21 Si 1.86804 * 120.00105 * 197.60985 * 19 17 16 22 22 H 1.48497 * 109.46901 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47214 * 119.99769 * 21 19 17 24 24 H 1.48502 * 109.46552 * 239.99911 * 21 19 17 25 25 C 1.40709 * 119.50949 * 359.69764 * 16 15 14 26 26 C 1.37620 * 119.74704 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.46900 * 293.83610 * 1 2 3 28 28 H 1.08993 * 109.47079 * 53.83606 * 1 2 3 29 29 H 1.09002 * 109.47151 * 173.83425 * 1 2 3 30 30 H 1.08999 * 109.46954 * 239.99984 * 2 1 3 31 31 H 1.09004 * 109.47200 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47283 * 299.99874 * 3 2 1 33 33 H 1.08999 * 109.47237 * 60.00157 * 3 2 1 34 34 H 1.08996 * 109.47402 * 303.46340 * 4 2 1 35 35 H 1.08998 * 109.47345 * 183.45995 * 4 2 1 36 36 H 1.09001 * 109.47120 * 205.00407 * 6 5 4 37 37 H 1.09002 * 109.47081 * 325.00291 * 6 5 4 38 38 H 0.97000 * 119.99848 * 0.02562 * 8 7 6 39 39 H 0.96996 * 120.00037 * 179.97438 * 8 7 6 40 40 H 1.08004 * 119.87630 * 359.97438 * 14 13 10 41 41 H 1.08001 * 120.12260 * 180.27434 * 15 14 13 42 42 H 0.97004 * 119.99779 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.12787 * 179.97438 * 25 16 15 44 44 H 1.08002 * 119.87981 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6210 -2.1245 1.2083 6 6 2.1504 -3.0172 0.1743 7 6 3.4756 -3.5764 0.6240 8 7 4.1529 -4.4273 -0.1721 9 8 3.9330 -3.2600 1.7017 10 16 0.5540 -2.7032 2.3349 11 8 0.8598 -4.0802 2.5069 12 8 0.5531 -1.7677 3.4044 13 6 -1.0525 -2.6366 1.6142 14 6 -1.8692 -1.5423 1.8541 15 6 -3.1236 -1.4771 1.2918 16 6 -3.5809 -2.5321 0.4807 17 6 -4.8704 -2.4791 -0.0969 18 1 -5.3737 -3.3920 -0.3789 19 6 -5.4946 -1.2436 -0.3029 20 7 -4.7866 -0.1435 -0.2936 21 14 -7.3386 -1.1652 -0.5911 22 1 -7.9040 -2.5379 -0.5547 23 1 -7.9708 -0.3407 0.4698 24 1 -7.6066 -0.5549 -1.9181 25 6 -2.7455 -3.6403 0.2488 26 6 -1.4926 -3.6817 0.8167 27 1 -0.3633 0.4153 0.9400 28 1 -0.3633 0.6064 -0.8296 29 1 -0.3633 -1.0217 -0.1104 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6269 -0.2446 2.1381 35 1 3.1282 -0.6679 1.2808 36 1 1.4493 -3.8347 0.0063 37 1 2.2869 -2.4594 -0.7522 38 1 3.7876 -4.6794 -1.0345 39 1 5.0061 -4.7869 0.1172 40 1 -1.5181 -0.7362 2.4812 41 1 -3.7565 -0.6216 1.4764 42 1 -5.2192 0.7129 -0.4368 43 1 -3.0865 -4.4558 -0.3718 44 1 -0.8498 -4.5315 0.6405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -108.581489 kcal Electronic energy + Delta-G solvation = -28915.290078 eV Core-core repulsion = 24958.706054 eV Total energy + Delta-G solvation = -3956.584023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.48377 -37.68060 -37.11062 -36.40971 -35.06903 -34.07720 -33.68288 -33.45213 -30.31256 -29.50445 -28.07340 -26.75723 -25.82909 -24.85322 -21.50422 -21.26407 -20.99475 -19.68527 -18.57093 -17.66964 -17.43904 -17.15181 -16.95659 -16.31438 -15.65289 -15.44218 -14.73933 -14.63356 -14.21230 -14.19820 -14.08412 -13.50706 -13.38641 -13.23037 -12.49508 -12.43333 -12.35376 -12.22345 -11.97826 -11.90515 -11.72920 -11.44214 -11.34120 -11.25088 -11.15275 -11.13963 -11.07392 -10.90244 -10.50103 -10.39199 -10.33664 -10.13642 -9.77233 -9.69749 -9.55671 -9.50519 -8.64430 -7.95327 -7.70647 -7.16269 -4.82092 1.19064 2.23529 2.70023 2.85463 2.88173 2.91781 2.93511 3.41504 3.64482 3.69040 4.22347 4.61471 4.83888 4.91845 5.00938 5.13573 5.21672 5.30822 5.34101 5.38395 5.60695 5.81094 5.92325 5.94063 5.99737 6.11270 6.13609 6.23075 6.28183 6.43663 6.59315 6.64024 6.66660 6.74018 6.80074 6.90916 6.97593 7.03355 7.30954 7.32125 7.39958 7.62938 7.75428 7.94616 8.29526 8.30583 8.49716 8.63205 9.74102 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.003804 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.322357 B = 7359.622394 C = 8002.505659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.124 3.876 5 N -0.981 5.981 6 C 0.109 3.891 7 C 0.500 3.500 8 N -0.859 5.859 9 O -0.531 6.531 10 S 2.690 3.310 11 O -0.981 6.981 12 O -0.978 6.978 13 C -0.786 4.786 14 C -0.008 4.008 15 C -0.182 4.182 16 C 0.140 3.860 17 C -0.434 4.434 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.763 5.763 21 Si 0.915 3.085 22 H -0.257 1.257 23 H -0.268 1.268 24 H -0.271 1.271 25 C -0.238 4.238 26 C 0.000 4.000 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.401 0.599 39 H 0.399 0.601 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.288 0.712 43 H 0.099 0.901 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 -0.063 -6.203 11.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.132 4.132 3 C -0.202 4.202 4 C -0.001 4.001 5 N -0.814 5.814 6 C -0.022 4.022 7 C 0.283 3.717 8 N -0.424 5.424 9 O -0.406 6.406 10 S 2.790 3.210 11 O -0.971 6.971 12 O -0.969 6.969 13 C -0.882 4.882 14 C -0.028 4.028 15 C -0.202 4.202 16 C 0.136 3.864 17 C -0.461 4.461 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.385 5.385 21 Si 0.738 3.262 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.196 1.196 25 C -0.258 4.258 26 C -0.020 4.020 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.229 0.771 39 H 0.229 0.771 40 H 0.121 0.879 41 H 0.141 0.859 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.027 0.256 -4.633 11.049 hybrid contribution -1.088 -0.046 -1.203 1.622 sum 8.939 0.209 -5.836 10.678 Atomic orbital electron populations 1.22059 0.93280 1.03821 1.02010 1.21522 0.97590 0.95801 0.98326 1.21777 1.00362 0.95986 1.02108 1.21453 1.00035 0.79459 0.99183 1.57435 1.59987 1.17040 1.46904 1.20961 0.93207 0.95039 0.92968 1.21447 0.87308 0.78313 0.84603 1.43860 1.25711 1.50128 1.22739 1.90725 1.69146 1.58939 1.21771 1.01505 0.73677 0.72632 0.73189 1.93476 1.84948 1.33601 1.85093 1.93456 1.87730 1.64176 1.51501 1.29211 1.22034 1.07505 1.29463 1.20229 0.94067 0.93704 0.94818 1.21330 0.96361 1.01412 1.01107 1.17831 0.91379 0.90382 0.86768 1.19977 0.99821 0.93677 1.32661 0.89492 1.26117 1.01318 0.95051 0.92450 1.69820 1.38123 0.99743 1.30835 0.86134 0.81046 0.80087 0.78934 1.18010 1.19234 1.19557 1.21018 0.95385 1.01556 1.07877 1.20096 0.95832 0.93865 0.92245 0.92472 0.92947 0.90674 0.91367 0.93052 0.92562 0.92395 0.88489 0.91249 0.87218 0.87344 0.77143 0.77074 0.87906 0.85944 0.90067 0.88315 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 7.94 37.16 0.30 -2.14 16 2 C -0.11 -1.44 2.93 -90.62 -0.27 -1.71 16 3 C -0.14 -1.60 9.19 37.15 0.34 -1.26 16 4 C 0.12 1.82 5.26 -4.04 -0.02 1.80 16 5 N -0.98 -15.87 1.88 -115.66 -0.22 -16.09 16 6 C 0.11 1.39 5.71 -5.19 -0.03 1.36 16 7 C 0.50 6.86 8.17 -10.99 -0.09 6.77 16 8 N -0.86 -7.47 8.87 31.22 0.28 -7.19 16 9 O -0.53 -9.79 17.26 5.56 0.10 -9.69 16 10 S 2.69 54.71 5.61 -107.50 -0.60 54.11 16 11 O -0.98 -21.83 16.58 -57.17 -0.95 -22.78 16 12 O -0.98 -22.07 15.52 -57.17 -0.89 -22.96 16 13 C -0.79 -16.71 4.53 -39.29 -0.18 -16.89 16 14 C -0.01 -0.17 7.16 -39.66 -0.28 -0.46 16 15 C -0.18 -4.35 8.70 -38.87 -0.34 -4.68 16 16 C 0.14 3.39 5.58 -106.83 -0.60 2.79 16 17 C -0.43 -10.27 9.06 -37.74 -0.34 -10.61 16 18 H 0.09 1.96 7.90 -52.49 -0.41 1.55 16 19 C 0.07 1.62 5.15 -17.34 -0.09 1.53 16 20 N -0.76 -17.37 10.90 55.55 0.61 -16.76 16 21 Si 0.91 16.58 29.59 -169.99 -5.03 11.55 16 22 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 23 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 24 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.24 -5.32 9.80 -38.87 -0.38 -5.70 16 26 C 0.00 -0.01 9.49 -39.66 -0.38 -0.38 16 27 H 0.06 0.95 7.16 -51.93 -0.37 0.58 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.32 5.61 -51.93 -0.29 1.03 16 30 H 0.07 0.78 6.79 -51.93 -0.35 0.42 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 1.55 6.70 -51.93 -0.35 1.20 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 1.30 7.78 -51.93 -0.40 0.90 16 37 H 0.11 1.00 6.69 -51.93 -0.35 0.65 16 38 H 0.40 2.07 8.83 -40.82 -0.36 1.71 16 39 H 0.40 3.07 8.93 -40.82 -0.36 2.71 16 40 H 0.10 2.19 7.15 -52.48 -0.38 1.82 16 41 H 0.12 3.00 6.11 -52.49 -0.32 2.68 16 42 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 43 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 44 H 0.10 1.85 7.71 -52.49 -0.40 1.44 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -32.14 370.64 -9.50 -41.64 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.03 Total: 12.16 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: -2.35 Total: -29.57 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.67 Total: -40.05 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -1.74 Total: -55.43 kcal Atomic # 14 Polarization: 16.58 SS G_CDS: -5.03 Total: 11.55 kcal Atomic # 16 Polarization: 54.71 SS G_CDS: -0.60 Total: 54.11 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.14 -9.50 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.939 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds