Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47087 * 2 1 4 4 C 1.53000 * 109.47072 * 119.99978 * 2 1 3 5 5 N 1.46504 * 109.47246 * 63.46179 * 4 2 1 6 6 C 1.46504 * 119.99971 * 65.75890 * 5 4 2 7 7 C 1.50699 * 109.46879 * 85.00355 * 6 5 4 8 8 N 1.34779 * 119.99752 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00285 * 359.97438 * 7 6 5 10 10 S 1.65606 * 120.00089 * 245.48809 * 5 4 2 11 11 O 1.42094 * 106.40093 * 209.64883 * 10 5 4 12 12 O 1.42098 * 106.39805 * 342.57006 * 10 5 4 13 13 C 1.76198 * 107.21783 * 96.10696 * 10 5 4 14 14 C 1.38636 * 119.74954 * 264.84650 * 13 10 5 15 15 C 1.37622 * 120.24527 * 179.72280 * 14 13 10 16 16 C 1.40715 * 119.74710 * 0.57373 * 15 14 13 17 17 C 1.41389 * 120.24683 * 179.68278 * 16 15 14 18 18 H 1.07997 * 120.00518 * 203.91376 * 17 16 15 19 19 C 1.39951 * 119.99962 * 23.90823 * 17 16 15 20 20 N 1.30825 * 119.99876 * 17.60140 * 19 17 16 21 21 Si 1.86804 * 120.00105 * 197.60985 * 19 17 16 22 22 H 1.48497 * 109.46901 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47214 * 119.99769 * 21 19 17 24 24 H 1.48502 * 109.46552 * 239.99911 * 21 19 17 25 25 C 1.40709 * 119.50949 * 359.69764 * 16 15 14 26 26 C 1.37620 * 119.74704 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.46900 * 293.83610 * 1 2 3 28 28 H 1.08993 * 109.47079 * 53.83606 * 1 2 3 29 29 H 1.09002 * 109.47151 * 173.83425 * 1 2 3 30 30 H 1.08999 * 109.46954 * 239.99984 * 2 1 3 31 31 H 1.09004 * 109.47200 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47283 * 299.99874 * 3 2 1 33 33 H 1.08999 * 109.47237 * 60.00157 * 3 2 1 34 34 H 1.08996 * 109.47402 * 303.46340 * 4 2 1 35 35 H 1.08998 * 109.47345 * 183.45995 * 4 2 1 36 36 H 1.09001 * 109.47120 * 205.00407 * 6 5 4 37 37 H 1.09002 * 109.47081 * 325.00291 * 6 5 4 38 38 H 0.97000 * 119.99848 * 0.02562 * 8 7 6 39 39 H 0.96996 * 120.00037 * 179.97438 * 8 7 6 40 40 H 1.08004 * 119.87630 * 359.97438 * 14 13 10 41 41 H 1.08001 * 120.12260 * 180.27434 * 15 14 13 42 42 H 0.97004 * 119.99779 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.12787 * 179.97438 * 25 16 15 44 44 H 1.08002 * 119.87981 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6210 -2.1245 1.2083 6 6 2.1504 -3.0172 0.1743 7 6 3.4756 -3.5764 0.6240 8 7 4.1529 -4.4273 -0.1721 9 8 3.9330 -3.2600 1.7017 10 16 0.5540 -2.7032 2.3349 11 8 0.8598 -4.0802 2.5069 12 8 0.5531 -1.7677 3.4044 13 6 -1.0525 -2.6366 1.6142 14 6 -1.8692 -1.5423 1.8541 15 6 -3.1236 -1.4771 1.2918 16 6 -3.5809 -2.5321 0.4807 17 6 -4.8704 -2.4791 -0.0969 18 1 -5.3737 -3.3920 -0.3789 19 6 -5.4946 -1.2436 -0.3029 20 7 -4.7866 -0.1435 -0.2936 21 14 -7.3386 -1.1652 -0.5911 22 1 -7.9040 -2.5379 -0.5547 23 1 -7.9708 -0.3407 0.4698 24 1 -7.6066 -0.5549 -1.9181 25 6 -2.7455 -3.6403 0.2488 26 6 -1.4926 -3.6817 0.8167 27 1 -0.3633 0.4153 0.9400 28 1 -0.3633 0.6064 -0.8296 29 1 -0.3633 -1.0217 -0.1104 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6269 -0.2446 2.1381 35 1 3.1282 -0.6679 1.2808 36 1 1.4493 -3.8347 0.0063 37 1 2.2869 -2.4594 -0.7522 38 1 3.7876 -4.6794 -1.0345 39 1 5.0061 -4.7869 0.1172 40 1 -1.5181 -0.7362 2.4812 41 1 -3.7565 -0.6216 1.4764 42 1 -5.2192 0.7129 -0.4368 43 1 -3.0865 -4.4558 -0.3718 44 1 -0.8498 -4.5315 0.6405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -131.775714 kcal Electronic energy + Delta-G solvation = -28916.295855 eV Core-core repulsion = 24958.706054 eV Total energy + Delta-G solvation = -3957.589800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56388 -39.39856 -38.45210 -37.95289 -36.78650 -35.77957 -34.74215 -34.48849 -32.05598 -31.25595 -29.14100 -27.93143 -27.52212 -26.03964 -23.23132 -22.94682 -22.09486 -20.83636 -19.93743 -19.39712 -18.86202 -18.42805 -18.09144 -17.65347 -17.16776 -16.86745 -16.01140 -15.82298 -15.70441 -15.60283 -15.24325 -15.08774 -14.90910 -14.56835 -14.08158 -13.95971 -13.61919 -13.55967 -13.52577 -13.31562 -13.08449 -12.94883 -12.90694 -12.85019 -12.61844 -12.59077 -12.39508 -12.31162 -11.96027 -11.67650 -11.50111 -11.47844 -11.28868 -11.18456 -11.17633 -10.58862 -9.89901 -9.70243 -9.47272 -8.83289 -6.60257 -0.39021 0.52313 1.12571 1.37791 1.43271 1.53633 1.67921 2.09763 2.13534 2.55153 2.66701 3.01924 3.47354 3.56097 3.74233 4.03223 4.06851 4.13795 4.26947 4.33721 4.34902 4.41717 4.51509 4.74343 4.87656 4.89506 4.92849 4.97323 5.00135 5.13313 5.14629 5.22320 5.28126 5.32455 5.48210 5.56905 5.60475 5.63214 5.67320 5.84071 5.97733 5.99016 6.19393 6.53426 6.54202 6.73196 6.85894 7.41918 8.10323 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.003804 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.322357 B = 7359.622394 C = 8002.505659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.142 4.142 4 C 0.122 3.878 5 N -0.977 5.977 6 C 0.096 3.904 7 C 0.496 3.504 8 N -0.834 5.834 9 O -0.586 6.586 10 S 2.707 3.293 11 O -1.000 7.000 12 O -1.007 7.007 13 C -0.787 4.787 14 C -0.007 4.007 15 C -0.202 4.202 16 C 0.115 3.885 17 C -0.464 4.464 18 H 0.090 0.910 19 C 0.038 3.962 20 N -0.790 5.790 21 Si 0.985 3.015 22 H -0.255 1.255 23 H -0.265 1.265 24 H -0.261 1.261 25 C -0.251 4.251 26 C 0.002 3.998 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.152 0.848 38 H 0.420 0.580 39 H 0.407 0.593 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.297 0.703 43 H 0.113 0.887 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.469 -0.446 -8.275 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 C -0.200 4.200 4 C -0.003 4.003 5 N -0.812 5.812 6 C -0.033 4.033 7 C 0.280 3.720 8 N -0.399 5.399 9 O -0.466 6.466 10 S 2.806 3.194 11 O -0.991 6.991 12 O -0.997 6.997 13 C -0.882 4.882 14 C -0.027 4.027 15 C -0.222 4.222 16 C 0.112 3.888 17 C -0.491 4.491 18 H 0.108 0.892 19 C -0.182 4.182 20 N -0.413 5.413 21 Si 0.805 3.195 22 H -0.178 1.178 23 H -0.190 1.190 24 H -0.186 1.186 25 C -0.272 4.272 26 C -0.018 4.018 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.169 0.831 38 H 0.252 0.748 39 H 0.239 0.761 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.878 -0.167 -6.759 12.808 hybrid contribution -1.205 0.054 -0.590 1.343 sum 9.673 -0.113 -7.349 12.148 Atomic orbital electron populations 1.22005 0.95661 1.02320 1.00949 1.21466 0.95207 0.97148 0.98282 1.21767 1.01553 0.94502 1.02224 1.21586 1.00735 0.78557 0.99423 1.57039 1.58985 1.18133 1.47079 1.21408 0.93018 0.95515 0.93343 1.21584 0.87610 0.78622 0.84211 1.43632 1.25410 1.48036 1.22835 1.90713 1.70504 1.61230 1.24149 1.00822 0.73538 0.71862 0.73184 1.93441 1.85121 1.34822 1.85673 1.93414 1.88097 1.64791 1.53446 1.29428 1.22887 1.07034 1.28811 1.20263 0.93754 0.94175 0.94520 1.21270 0.96973 1.01530 1.02459 1.18148 0.92278 0.91124 0.87273 1.20241 1.00334 0.94647 1.33834 0.89166 1.26906 1.05422 0.94226 0.91671 1.69850 1.40002 1.00460 1.30941 0.85090 0.75360 0.79993 0.79042 1.17850 1.19007 1.18569 1.21234 0.95771 1.01621 1.08536 1.20384 0.95697 0.94366 0.91329 0.94446 0.92859 0.92598 0.88812 0.91144 0.91633 0.93198 0.90466 0.89762 0.86085 0.83075 0.74775 0.76143 0.87890 0.87393 0.89193 0.86897 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 7.94 71.98 0.57 -4.17 16 2 C -0.10 -2.39 2.93 -10.79 -0.03 -2.43 16 3 C -0.14 -2.84 9.19 71.98 0.66 -2.18 16 4 C 0.12 3.43 5.26 86.38 0.45 3.89 16 5 N -0.98 -30.33 1.88 -519.84 -0.98 -31.31 16 6 C 0.10 2.19 5.71 85.63 0.49 2.68 16 7 C 0.50 12.42 8.17 87.66 0.72 13.13 16 8 N -0.83 -11.85 8.87 -173.53 -1.54 -13.39 16 9 O -0.59 -20.96 17.26 -3.02 -0.05 -21.01 16 10 S 2.71 109.75 5.61 -56.49 -0.32 109.44 16 11 O -1.00 -43.90 16.58 -128.00 -2.12 -46.02 16 12 O -1.01 -46.37 15.52 -128.00 -1.99 -48.36 16 13 C -0.79 -33.60 4.53 22.46 0.10 -33.50 16 14 C -0.01 -0.32 7.16 22.22 0.16 -0.16 16 15 C -0.20 -10.02 8.70 22.73 0.20 -9.82 16 16 C 0.12 5.70 5.58 -21.29 -0.12 5.59 16 17 C -0.46 -22.31 9.06 23.46 0.21 -22.09 16 18 H 0.09 4.12 7.90 -2.91 -0.02 4.10 16 19 C 0.04 1.68 5.15 85.26 0.44 2.12 16 20 N -0.79 -36.61 10.90 21.83 0.24 -36.37 16 21 Si 0.99 33.72 29.59 68.60 2.03 35.75 16 22 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 23 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 24 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 25 C -0.25 -11.24 9.80 22.73 0.22 -11.02 16 26 C 0.00 0.09 9.49 22.22 0.21 0.30 16 27 H 0.04 1.28 7.16 -2.39 -0.02 1.26 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.95 5.61 -2.39 -0.01 1.93 16 30 H 0.09 1.77 6.79 -2.39 -0.02 1.75 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 2.49 6.70 -2.39 -0.02 2.48 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.12 2.50 7.78 -2.39 -0.02 2.48 16 37 H 0.15 2.11 6.69 -2.39 -0.02 2.09 16 38 H 0.42 2.68 8.83 -92.71 -0.82 1.86 16 39 H 0.41 5.12 8.93 -92.71 -0.83 4.29 16 40 H 0.10 4.62 7.15 -2.91 -0.02 4.60 16 41 H 0.11 5.57 6.11 -2.91 -0.02 5.55 16 42 H 0.30 12.27 8.30 -92.70 -0.77 11.50 16 43 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 44 H 0.13 4.46 7.71 -2.91 -0.02 4.44 16 Total: -1.00 -71.77 370.64 -1.04 -72.80 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -0.60 Total: 36.14 kcal Atomic # 6 Polarization: -61.95 SS G_CDS: 4.29 Total: -57.67 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.28 Total: -81.07 kcal Atomic # 8 Polarization: -111.22 SS G_CDS: -4.16 Total: -115.38 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.75 kcal Atomic # 16 Polarization: 109.75 SS G_CDS: -0.32 Total: 109.44 kcal Total: -71.77 -1.04 -72.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.974 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds