Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47096 * 2 1 4 4 N 1.46505 * 109.46749 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00046 * 277.21173 * 4 3 2 6 6 H 1.08008 * 119.99698 * 138.57308 * 5 4 3 7 7 C 1.38804 * 120.00130 * 318.57025 * 5 4 3 8 8 N 1.31622 * 120.00092 * 343.16952 * 7 5 4 9 9 Si 1.86803 * 119.99947 * 163.16178 * 7 5 4 10 10 H 1.48507 * 109.46855 * 90.00378 * 9 7 5 11 11 H 1.48503 * 109.47349 * 210.00234 * 9 7 5 12 12 H 1.48489 * 109.47381 * 330.00514 * 9 7 5 13 13 S 1.65603 * 119.99804 * 97.21383 * 4 3 2 14 14 O 1.42102 * 106.39797 * 156.45665 * 13 4 3 15 15 O 1.42098 * 106.40292 * 23.54055 * 13 4 3 16 16 C 1.76190 * 107.22060 * 269.99805 * 13 4 3 17 17 C 1.38312 * 119.96515 * 89.99974 * 16 13 4 18 18 C 1.38260 * 120.13819 * 180.25781 * 17 16 13 19 19 C 1.38130 * 120.07616 * 359.48738 * 18 17 16 20 20 C 1.50697 * 120.04026 * 180.25609 * 19 18 17 21 21 C 1.38857 * 119.92581 * 0.53143 * 19 18 17 22 22 N 1.39924 * 120.06887 * 179.69707 * 21 19 18 23 23 C 1.34783 * 119.99777 * 153.00067 * 22 21 19 24 24 C 1.50691 * 119.99944 * 184.99253 * 23 22 21 25 25 O 1.21294 * 119.99779 * 4.99578 * 23 22 21 26 26 C 1.38094 * 119.96684 * 270.02506 * 16 13 4 27 27 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 300.00262 * 1 2 3 29 29 H 1.09001 * 109.46610 * 60.00132 * 1 2 3 30 30 H 1.08998 * 109.47068 * 239.99738 * 2 1 3 31 31 H 1.09001 * 109.46610 * 119.99868 * 2 1 3 32 32 H 1.08998 * 109.47376 * 59.99927 * 3 2 1 33 33 H 1.09001 * 109.47284 * 299.99455 * 3 2 1 34 34 H 0.97003 * 119.99713 * 179.97438 * 8 7 5 35 35 H 1.07992 * 119.92693 * 359.97438 * 17 16 13 36 36 H 1.08000 * 119.95650 * 179.74884 * 18 17 16 37 37 H 1.08995 * 109.47413 * 270.27820 * 20 19 18 38 38 H 1.09005 * 109.47019 * 30.27782 * 20 19 18 39 39 H 1.09006 * 109.47093 * 150.27668 * 20 19 18 40 40 H 0.96998 * 120.00409 * 332.99844 * 22 21 19 41 41 H 1.09001 * 109.47346 * 60.00116 * 24 23 22 42 42 H 1.09002 * 109.47076 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.47502 * 299.99689 * 24 23 22 44 44 H 1.07997 * 120.03565 * 359.97438 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.2937 1.1774 6 1 5.0666 0.6649 1.2162 7 6 3.7553 1.9509 2.3204 8 7 2.9124 2.9569 2.2211 9 14 4.3676 1.4077 3.9995 10 1 5.6051 2.1544 4.3406 11 1 3.3250 1.6849 5.0201 12 1 4.6594 -0.0480 3.9728 13 16 4.3337 1.6222 -1.4219 14 8 5.6165 2.1276 -1.0778 15 8 3.4524 2.2844 -2.3186 16 6 4.5947 0.0092 -2.0810 17 6 3.6596 -0.5480 -2.9342 18 6 3.8582 -1.8157 -3.4493 19 6 4.9969 -2.5255 -3.1215 20 6 5.2154 -3.9047 -3.6880 21 6 5.9375 -1.9690 -2.2649 22 7 7.0890 -2.6879 -1.9258 23 6 8.2156 -2.0328 -1.5820 24 6 9.4861 -2.8017 -1.3262 25 8 8.2068 -0.8243 -1.4785 26 6 5.7324 -0.6975 -1.7448 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 2.6089 3.4160 3.0199 35 1 2.7702 0.0063 -3.1950 36 1 3.1241 -2.2496 -4.1121 37 1 4.7766 -4.6456 -3.0198 38 1 4.7429 -3.9741 -4.6678 39 1 6.2847 -4.0920 -3.7861 40 1 7.0765 -3.6577 -1.9380 41 1 9.7652 -3.3517 -2.2250 42 1 10.2840 -2.1076 -1.0622 43 1 9.3282 -3.5020 -0.5061 44 1 6.4623 -0.2618 -1.0785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092368368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = -107.209121 kcal Electronic energy + Delta-G solvation = -28868.309311 eV Core-core repulsion = 24911.784798 eV Total energy + Delta-G solvation = -3956.524513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.76794 -39.67313 -38.09156 -37.85176 -36.59720 -36.08099 -34.33650 -33.75790 -32.66751 -31.98215 -29.72782 -28.02727 -27.62444 -25.46823 -24.36270 -22.89129 -22.18850 -21.63409 -20.51463 -19.70615 -18.62862 -18.16850 -18.07440 -17.34417 -16.88670 -16.67673 -16.29681 -16.13776 -15.72456 -15.46059 -15.13857 -15.07575 -14.81382 -14.56913 -14.43568 -13.65212 -13.60786 -13.40082 -13.33747 -13.28237 -13.22007 -13.12155 -13.03721 -12.99975 -12.91034 -12.69821 -12.52184 -12.42046 -12.14535 -12.10583 -11.91572 -11.84388 -11.60326 -11.30203 -10.90799 -10.83449 -10.04872 -9.56475 -9.21840 -8.21675 -6.05202 -0.35219 -0.13024 0.21372 1.43411 1.45293 1.48894 1.56567 2.01158 2.27550 2.45802 2.72852 2.92144 3.17306 3.52350 3.78782 3.80495 3.83751 4.11315 4.26732 4.31889 4.39756 4.43259 4.48739 4.58183 4.63615 4.65196 4.72408 4.74394 4.82926 4.99290 5.07084 5.08811 5.15768 5.17269 5.22726 5.26966 5.29766 5.33825 5.34138 5.48053 5.68980 5.90684 5.94203 6.37959 6.47454 7.01421 7.10163 7.43164 8.79931 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010477 B = 0.005154 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.838893 B = 5431.644187 C = 6566.222765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.117 3.883 4 N -0.848 5.848 5 C -0.299 4.299 6 H 0.075 0.925 7 C -0.001 4.001 8 N -0.888 5.888 9 Si 0.977 3.023 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.258 1.258 13 S 2.622 3.378 14 O -1.018 7.018 15 O -1.021 7.021 16 C -0.652 4.652 17 C -0.051 4.051 18 C -0.115 4.115 19 C -0.058 4.058 20 C -0.115 4.115 21 C 0.112 3.888 22 N -0.652 5.652 23 C 0.489 3.511 24 C -0.158 4.158 25 O -0.578 6.578 26 C -0.061 4.061 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.272 0.728 35 H 0.140 0.860 36 H 0.177 0.823 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.434 0.566 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -22.371 -8.578 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C -0.009 4.009 4 N -0.679 5.679 5 C -0.435 4.435 6 H 0.093 0.907 7 C -0.206 4.206 8 N -0.528 5.528 9 Si 0.800 3.200 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.182 1.182 13 S 2.726 3.274 14 O -1.008 7.008 15 O -1.011 7.011 16 C -0.742 4.742 17 C -0.071 4.071 18 C -0.134 4.134 19 C -0.060 4.060 20 C -0.171 4.171 21 C 0.016 3.984 22 N -0.300 5.300 23 C 0.280 3.720 24 C -0.217 4.217 25 O -0.457 6.457 26 C -0.082 4.082 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.157 0.843 36 H 0.195 0.805 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.275 0.725 41 H 0.144 0.856 42 H 0.107 0.893 43 H 0.139 0.861 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.039 -20.626 -8.908 22.672 hybrid contribution 0.367 -0.020 0.930 1.000 sum 3.406 -20.646 -7.978 22.394 Atomic orbital electron populations 1.21654 0.93799 1.02400 1.01866 1.21869 0.96928 0.96731 1.01487 1.21442 0.79380 0.97157 1.02967 1.52541 1.12135 1.85786 1.17419 1.19136 1.12532 1.25586 0.86259 0.90747 1.26306 0.97226 0.93663 1.03409 1.70037 1.32926 1.18979 1.30837 0.85197 0.78016 0.79296 0.77457 1.20618 1.19314 1.18237 1.04595 0.72993 0.75312 0.74516 1.93383 1.44316 1.79101 1.83972 1.93344 1.66396 1.73790 1.67548 1.30626 1.04179 1.25126 1.14310 1.21084 0.96657 0.96348 0.93000 1.21400 0.98085 0.93015 1.00926 1.20401 0.93095 0.99108 0.93441 1.20981 1.04090 0.89453 1.02627 1.17774 0.89715 0.92493 0.98445 1.43454 1.08357 1.11195 1.66999 1.22308 0.86820 0.88233 0.74597 1.21962 0.91161 1.01810 1.06720 1.90812 1.85883 1.17773 1.51191 1.21206 0.94757 0.94944 0.97322 0.90769 0.93183 0.92239 0.92497 0.92694 0.89261 0.92794 0.91873 0.84266 0.80538 0.88120 0.88594 0.89885 0.72498 0.85583 0.89311 0.86072 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.91 71.98 0.71 -3.47 16 2 C -0.13 -5.02 6.21 30.60 0.19 -4.83 16 3 C 0.12 5.65 5.32 86.38 0.46 6.11 16 4 N -0.85 -45.86 2.80 -343.45 -0.96 -46.82 16 5 C -0.30 -17.03 8.82 84.03 0.74 -16.28 16 6 H 0.07 4.28 7.89 -2.91 -0.02 4.26 16 7 C 0.00 -0.06 5.10 84.86 0.43 0.37 16 8 N -0.89 -50.65 11.38 21.65 0.25 -50.40 16 9 Si 0.98 43.22 29.59 68.60 2.03 45.25 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 13 S 2.62 141.66 5.65 -56.49 -0.32 141.34 16 14 O -1.02 -63.62 16.49 -128.00 -2.11 -65.73 16 15 O -1.02 -56.18 15.81 -128.00 -2.02 -58.20 16 16 C -0.65 -28.65 5.97 22.25 0.13 -28.52 16 17 C -0.05 -1.76 8.66 22.29 0.19 -1.57 16 18 C -0.12 -2.82 9.70 22.25 0.22 -2.61 16 19 C -0.06 -1.30 5.90 -19.74 -0.12 -1.41 16 20 C -0.12 -1.16 9.45 71.23 0.67 -0.48 16 21 C 0.11 3.39 6.42 38.15 0.24 3.63 16 22 N -0.65 -14.10 4.93 -303.49 -1.50 -15.59 16 23 C 0.49 12.79 7.83 87.65 0.69 13.48 16 24 C -0.16 -1.95 10.32 71.23 0.74 -1.21 16 25 O -0.58 -23.76 14.05 -3.07 -0.04 -23.81 16 26 C -0.06 -2.60 8.26 22.39 0.18 -2.41 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 2.03 7.26 -2.39 -0.02 2.01 16 31 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 4.69 5.58 -2.39 -0.01 4.68 16 33 H 0.05 2.59 6.88 -2.39 -0.02 2.57 16 34 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.14 4.62 7.61 -2.91 -0.02 4.60 16 36 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.10 0.67 8.09 -2.38 -0.02 0.65 16 39 H 0.08 0.59 7.03 -2.38 -0.02 0.57 16 40 H 0.43 4.56 7.50 -92.71 -0.70 3.86 16 41 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 1.32 8.12 -2.39 -0.02 1.30 16 43 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.13 6.52 5.15 -2.91 -0.02 6.50 16 Total: -1.00 -90.23 374.34 1.14 -89.09 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.33 Total: 24.07 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 5.49 Total: -39.20 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -2.21 Total: -112.82 kcal Atomic # 8 Polarization: -143.56 SS G_CDS: -4.18 Total: -147.74 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 141.66 SS G_CDS: -0.32 Total: 141.34 kcal Total: -90.23 1.14 -89.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092368368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.116 kcal (2) G-P(sol) polarization free energy of solvation -90.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds