Wall clock time and date at job start Sat Apr 11 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46858 * 2 1 4 4 C 1.52995 * 109.47225 * 119.99895 * 2 1 3 5 5 C 1.53003 * 109.46843 * 240.00188 * 2 1 3 6 6 H 1.08998 * 109.46542 * 185.36844 * 5 2 1 7 7 N 1.46492 * 109.47157 * 65.36876 * 5 2 1 8 8 S 1.65609 * 120.00053 * 144.99732 * 7 5 2 9 9 O 1.42102 * 106.40178 * 178.53682 * 8 7 5 10 10 O 1.42096 * 106.40128 * 311.45949 * 8 7 5 11 11 C 1.76199 * 107.21449 * 65.00007 * 8 7 5 12 12 C 1.38637 * 119.74779 * 269.72362 * 11 8 7 13 13 C 1.37622 * 120.24741 * 179.71835 * 12 11 8 14 14 C 1.40716 * 119.74290 * 0.58197 * 13 12 11 15 15 C 1.41396 * 120.24209 * 179.67441 * 14 13 12 16 16 H 1.08009 * 119.99953 * 25.80281 * 15 14 13 17 17 C 1.39935 * 120.00161 * 205.79424 * 15 14 13 18 18 N 1.30831 * 120.00074 * 13.36699 * 17 15 14 19 19 Si 1.86800 * 120.00211 * 193.36457 * 17 15 14 20 20 H 1.48498 * 109.47379 * 60.00162 * 19 17 15 21 21 H 1.48501 * 109.47304 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47168 * 300.00092 * 19 17 15 23 23 C 1.40715 * 119.51129 * 359.69418 * 14 13 12 24 24 C 1.37616 * 119.74620 * 0.02562 * 23 14 13 25 25 C 1.50693 * 109.47276 * 305.36564 * 5 2 1 26 26 N 1.34780 * 120.00123 * 281.90918 * 25 5 2 27 27 O 1.21285 * 120.00374 * 101.90598 * 25 5 2 28 28 H 1.09002 * 109.47558 * 60.00267 * 1 2 3 29 29 H 1.09000 * 109.47418 * 299.99532 * 1 2 3 30 30 H 1.09001 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47451 * 59.99879 * 3 2 1 32 32 H 1.09000 * 109.46778 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46818 * 300.00186 * 3 2 1 34 34 H 1.08999 * 109.47461 * 65.70922 * 4 2 1 35 35 H 1.08998 * 109.46909 * 185.70599 * 4 2 1 36 36 H 1.09002 * 109.47142 * 305.70533 * 4 2 1 37 37 H 0.97003 * 120.00791 * 324.99522 * 7 5 2 38 38 H 1.08003 * 119.87733 * 359.97438 * 12 11 8 39 39 H 1.08004 * 120.12474 * 180.27933 * 13 12 11 40 40 H 0.96999 * 119.99792 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.12363 * 179.97438 * 23 14 13 42 42 H 1.07999 * 119.87438 * 180.02562 * 24 23 14 43 43 H 0.96997 * 120.00076 * 5.19477 * 26 25 5 44 44 H 0.97001 * 120.00201 * 185.18557 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0399 -0.7212 -1.2493 6 1 3.1257 -0.8052 -1.2025 7 7 1.6600 0.0399 -2.4419 8 16 2.6733 0.0886 -3.7509 9 8 2.0137 0.8666 -4.7402 10 8 3.9642 0.4036 -3.2474 11 6 2.7754 -1.5493 -4.3924 12 6 3.7582 -2.4099 -3.9282 13 6 3.8437 -3.6932 -4.4179 14 6 2.9364 -4.1266 -5.4024 15 6 3.0191 -5.4407 -5.9179 16 1 3.4543 -6.2286 -5.3209 17 6 2.5368 -5.7203 -7.2014 18 7 2.2534 -4.7412 -8.0215 19 14 2.2977 -7.4918 -7.7439 20 1 1.3246 -8.1587 -6.8419 21 1 1.7812 -7.5177 -9.1360 22 1 3.5976 -8.2071 -7.6853 23 6 1.9467 -3.2426 -5.8703 24 6 1.8763 -1.9656 -5.3620 25 6 1.4321 -2.0984 -1.3176 26 7 1.9188 -3.0890 -0.5441 27 8 0.5048 -2.3155 -2.0686 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.7626 -1.7741 1.1996 35 1 3.1252 -0.6335 1.3017 36 1 1.5957 -0.2697 2.1363 37 1 0.8148 0.5155 -2.4650 38 1 4.4567 -2.0733 -3.1763 39 1 4.6073 -4.3634 -4.0515 40 1 1.9188 -4.9351 -8.9110 41 1 1.2456 -3.5647 -6.6259 42 1 1.1172 -1.2855 -5.7193 43 1 2.6091 -2.8988 0.1103 44 1 1.5787 -3.9922 -0.6416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130544010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:12 Heat of formation + Delta-G solvation = -108.215365 kcal Electronic energy + Delta-G solvation = -29059.975645 eV Core-core repulsion = 25103.407498 eV Total energy + Delta-G solvation = -3956.568147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.15921 -37.50474 -37.05255 -36.46985 -35.14488 -33.96390 -33.70363 -32.95742 -30.17936 -29.40095 -27.54990 -27.42437 -26.54531 -25.75253 -21.45797 -21.12666 -21.02554 -19.30819 -18.97164 -17.68455 -17.53839 -17.21324 -16.57166 -16.30964 -15.65631 -15.35576 -15.07527 -14.42448 -14.28261 -14.09186 -13.93576 -13.38020 -13.34509 -13.16807 -13.00032 -12.46650 -12.35543 -12.15855 -12.10700 -11.83391 -11.71609 -11.68949 -11.45982 -11.36929 -11.27263 -11.19238 -11.06183 -10.96026 -10.82231 -10.77151 -10.46573 -10.27202 -9.68980 -9.53251 -9.42266 -9.40361 -8.96427 -7.86273 -7.61371 -7.02814 -4.74219 1.22944 2.32605 2.84533 2.91698 2.93208 2.96295 3.01666 3.49398 3.71184 3.82073 4.31574 4.45298 4.53604 4.62725 4.70229 5.02898 5.10038 5.22345 5.26259 5.40758 5.46658 5.54934 5.62668 5.70793 5.77642 5.84628 5.87976 6.03855 6.05413 6.17969 6.21710 6.22086 6.73640 6.76716 6.98114 6.98904 7.10793 7.23783 7.40947 7.47591 7.50301 7.72483 7.83892 8.03963 8.40452 8.50110 8.58591 8.72970 9.87248 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017152 B = 0.003853 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.089052 B = 7264.658062 C = 8077.640303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.157 4.157 5 C 0.148 3.852 6 H 0.111 0.889 7 N -1.100 6.100 8 S 2.688 3.312 9 O -0.980 6.980 10 O -0.984 6.984 11 C -0.778 4.778 12 C -0.004 4.004 13 C -0.235 4.235 14 C 0.143 3.857 15 C -0.438 4.438 16 H 0.085 0.915 17 C 0.071 3.929 18 N -0.771 5.771 19 Si 0.919 3.081 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.262 1.262 23 C -0.178 4.178 24 C -0.004 4.004 25 C 0.504 3.496 26 N -0.858 5.858 27 O -0.511 6.511 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.414 0.586 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.288 0.712 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.397 0.603 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 4.200 15.905 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.215 4.215 5 C 0.035 3.965 6 H 0.129 0.871 7 N -0.855 5.855 8 S 2.788 3.212 9 O -0.970 6.970 10 O -0.975 6.975 11 C -0.874 4.874 12 C -0.024 4.024 13 C -0.256 4.256 14 C 0.139 3.861 15 C -0.466 4.466 16 H 0.103 0.897 17 C -0.151 4.151 18 N -0.394 5.394 19 Si 0.742 3.258 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.187 1.187 23 C -0.198 4.198 24 C -0.024 4.024 25 C 0.286 3.714 26 N -0.425 5.425 27 O -0.384 6.384 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.249 0.751 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.119 0.881 43 H 0.227 0.773 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.628 5.048 14.775 15.698 hybrid contribution -0.371 -1.728 -0.212 1.780 sum -1.999 3.320 14.562 15.069 Atomic orbital electron populations 1.21931 0.93644 1.02634 1.02089 1.20688 0.96690 0.96416 0.92899 1.21866 1.01715 0.94128 1.02140 1.22137 1.01704 1.00954 0.96749 1.20678 1.00395 0.88641 0.86767 0.87118 1.55612 1.36850 1.63732 1.29271 1.01380 0.72568 0.75288 0.72006 1.93505 1.75856 1.70037 1.57631 1.93479 1.38957 1.84531 1.80491 1.29040 1.14401 1.23209 1.20755 1.20081 0.93459 0.93325 0.95547 1.20978 1.02664 0.95768 1.06167 1.17830 0.87701 0.92526 0.88039 1.19867 1.32432 0.95288 0.99025 0.89733 1.26113 0.92384 1.00129 0.96430 1.69805 1.28740 1.34102 1.06751 0.86181 0.80016 0.81250 0.78340 1.18483 1.19930 1.18660 1.21381 1.00856 0.93559 1.04040 1.20196 0.94237 0.95799 0.92180 1.21043 0.83571 0.87096 0.79682 1.44084 1.44631 1.12049 1.41770 1.90773 1.27356 1.82959 1.37289 0.92031 0.92201 0.92117 0.92237 0.91823 0.91971 0.91591 0.91699 0.91581 0.75112 0.88299 0.88437 0.90033 0.85775 0.88078 0.77303 0.76831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.01 37.16 0.30 -1.16 16 2 C -0.06 -0.64 0.61 -154.51 -0.09 -0.73 16 3 C -0.14 -1.32 8.26 37.16 0.31 -1.01 16 4 C -0.16 -1.14 7.91 37.15 0.29 -0.85 16 5 C 0.15 1.94 2.02 -69.09 -0.14 1.80 16 6 H 0.11 1.40 7.50 -51.93 -0.39 1.01 16 7 N -1.10 -16.93 4.06 -5.89 -0.02 -16.95 16 8 S 2.69 53.02 5.71 -107.50 -0.61 52.40 16 9 O -0.98 -21.80 17.26 -57.17 -0.99 -22.78 16 10 O -0.98 -20.27 16.59 -57.17 -0.95 -21.22 16 11 C -0.78 -17.68 5.97 -39.29 -0.23 -17.92 16 12 C 0.00 -0.09 9.49 -39.66 -0.38 -0.46 16 13 C -0.24 -5.59 9.80 -38.87 -0.38 -5.97 16 14 C 0.14 3.71 5.58 -106.82 -0.60 3.12 16 15 C -0.44 -11.03 9.07 -37.75 -0.34 -11.38 16 16 H 0.08 1.99 7.88 -52.48 -0.41 1.58 16 17 C 0.07 1.69 5.23 -17.34 -0.09 1.60 16 18 N -0.77 -19.16 10.78 55.55 0.60 -18.56 16 19 Si 0.92 17.60 29.58 -169.99 -5.03 12.57 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 C -0.18 -4.68 8.69 -38.87 -0.34 -5.02 16 24 C 0.00 -0.09 9.49 -39.66 -0.38 -0.47 16 25 C 0.50 7.40 5.60 -10.99 -0.06 7.34 16 26 N -0.86 -9.31 7.88 31.22 0.25 -9.07 16 27 O -0.51 -9.78 17.19 5.55 0.10 -9.68 16 28 H 0.06 0.65 6.75 -51.93 -0.35 0.30 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.69 6.94 -51.93 -0.36 0.33 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.62 7.36 -51.93 -0.38 0.24 16 34 H 0.07 0.45 5.25 -51.93 -0.27 0.18 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.41 5.69 7.20 -34.47 -0.25 5.44 16 38 H 0.10 1.94 7.59 -52.48 -0.40 1.54 16 39 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 40 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 41 H 0.12 3.34 6.09 -52.48 -0.32 3.02 16 42 H 0.10 2.39 7.60 -52.49 -0.40 1.99 16 43 H 0.40 2.97 6.99 -40.82 -0.29 2.68 16 44 H 0.40 4.25 8.93 -40.82 -0.36 3.88 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -33.32 369.21 -9.08 -42.40 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -5.85 Total: 16.43 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -2.13 Total: -31.11 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.82 Total: -44.58 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -1.84 Total: -53.68 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: 53.02 SS G_CDS: -0.61 Total: 52.40 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.32 -9.08 -42.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130544010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.811 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds