Wall clock time and date at job start Sat Apr 11 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47349 * 2 1 4 4 H 1.09000 * 109.47100 * 304.99833 * 3 2 1 5 5 C 1.50694 * 109.47107 * 184.99593 * 3 2 1 6 6 H 1.08000 * 120.00307 * 240.00029 * 5 3 2 7 7 C 1.37876 * 120.00021 * 60.00131 * 5 3 2 8 8 N 1.31522 * 119.99891 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00158 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46793 * 60.00159 * 9 7 5 11 11 H 1.48498 * 109.46851 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46770 * 300.00055 * 9 7 5 13 13 N 1.46504 * 109.46802 * 64.99825 * 3 2 1 14 14 C 1.34777 * 119.99743 * 274.99921 * 13 3 2 15 15 O 1.21582 * 120.00261 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99582 * 180.02562 * 14 13 3 17 17 C 1.39943 * 119.99832 * 174.68581 * 16 14 13 18 18 C 1.38867 * 120.07049 * 326.56739 * 17 16 14 19 19 C 1.38115 * 119.92495 * 179.76624 * 18 17 16 20 20 C 1.38273 * 120.07351 * 0.50955 * 19 18 17 21 21 S 1.76202 * 119.93025 * 179.71880 * 20 19 18 22 22 O 1.42101 * 104.27526 * 26.09639 * 21 20 19 23 23 O 1.42101 * 104.27688 * 153.95048 * 21 20 19 24 24 C 1.81392 * 104.45282 * 270.02374 * 21 20 19 25 25 C 1.52991 * 109.47318 * 180.02562 * 24 21 20 26 26 C 1.38286 * 120.14030 * 359.74488 * 20 19 18 27 27 C 1.38115 * 120.06906 * 359.97438 * 26 20 19 28 28 H 1.08996 * 109.47539 * 300.00174 * 1 2 3 29 29 H 1.09001 * 109.46691 * 60.00376 * 1 2 3 30 30 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47367 * 239.99621 * 2 1 3 32 32 H 1.09000 * 109.46707 * 120.00175 * 2 1 3 33 33 H 0.97001 * 120.00139 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00155 * 94.99943 * 13 3 2 35 35 H 0.97002 * 120.00248 * 354.69117 * 16 14 13 36 36 H 1.07997 * 120.03552 * 359.97438 * 18 17 16 37 37 H 1.08007 * 119.95987 * 180.25461 * 19 18 17 38 38 H 1.09005 * 109.47084 * 299.99879 * 24 21 20 39 39 H 1.08997 * 109.47386 * 59.99995 * 24 21 20 40 40 H 1.09009 * 109.47528 * 179.97438 * 25 24 21 41 41 H 1.09001 * 109.47520 * 300.00018 * 25 24 21 42 42 H 1.09007 * 109.47499 * 59.99921 * 25 24 21 43 43 H 1.07996 * 119.96612 * 179.97438 * 26 20 19 44 44 H 1.07994 * 120.03502 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8811 -1.3816 10 1 6.5975 0.1470 -0.2346 11 1 6.3978 0.2175 -2.6507 12 1 6.4995 2.2813 -1.3819 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3411 2.6327 0.4317 16 7 0.0788 3.2673 2.5184 17 6 -1.1389 3.9519 2.6020 18 6 -1.6429 4.6137 1.4900 19 6 -2.8473 5.2843 1.5746 20 6 -3.5460 5.3061 2.7676 21 16 -5.0786 6.1691 2.8733 22 8 -5.5763 6.1635 1.5423 23 8 -5.7795 5.5117 3.9202 24 6 -4.6178 7.8506 3.3735 25 6 -5.8783 8.7081 3.5016 26 6 -3.0443 4.6525 3.8782 27 6 -1.8432 3.9752 3.7986 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0605 -2.9502 34 1 2.2719 2.1231 1.9978 35 1 0.6663 3.2269 3.2891 36 1 -1.0953 4.6012 0.5593 37 1 -3.2418 5.7958 0.7090 38 1 -4.1034 7.8159 4.3339 39 1 -3.9573 8.2849 2.6231 40 1 -5.6015 9.7186 3.8027 41 1 -6.3932 8.7430 2.5415 42 1 -6.5386 8.2738 4.2524 43 1 -3.5921 4.6717 4.8087 44 1 -1.4517 3.4653 4.6663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157017311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:28 Heat of formation + Delta-G solvation = -75.248004 kcal Electronic energy + Delta-G solvation = -27063.790692 eV Core-core repulsion = 23108.652117 eV Total energy + Delta-G solvation = -3955.138575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46400 -38.66256 -37.24069 -36.09284 -35.60980 -34.40567 -33.54051 -32.54177 -31.13532 -31.07788 -29.54797 -26.96171 -24.54188 -23.58409 -23.10247 -22.63836 -20.79329 -19.64451 -19.13903 -18.40909 -18.11011 -17.42716 -16.48250 -16.31843 -16.06175 -15.49904 -15.12937 -14.85214 -14.53782 -14.35351 -14.30264 -13.73246 -13.65123 -13.36589 -13.31640 -13.06770 -12.87937 -12.71496 -12.31704 -12.22638 -12.13238 -11.96545 -11.66434 -11.45922 -11.31958 -11.13407 -11.04939 -10.89985 -10.71674 -10.45640 -10.38398 -10.25798 -9.71207 -9.55920 -9.14930 -9.07398 -8.58536 -8.38426 -7.93019 -6.19682 -4.29863 -0.13215 0.78062 1.27248 2.71655 2.94283 3.20174 3.25349 3.26419 3.27351 3.67544 3.86025 3.89490 4.24103 4.25122 4.41267 4.66507 4.76665 4.77904 4.84287 5.11875 5.13850 5.19434 5.27562 5.38658 5.48795 5.49380 5.80284 5.85366 6.09013 6.21517 6.34740 6.41099 6.45195 6.59652 6.87873 6.92894 7.03168 7.23482 7.26479 7.33992 7.56104 7.75950 7.85381 8.10025 8.59495 8.71823 9.06985 9.37742 10.85551 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027671 B = 0.002162 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.649302 B =12946.129974 C =13050.509082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.714 5.714 14 C 0.690 3.310 15 O -0.569 6.569 16 N -0.697 5.697 17 C 0.243 3.757 18 C -0.144 4.144 19 C -0.003 4.003 20 C -0.692 4.692 21 S 2.500 3.500 22 O -0.938 6.938 23 O -0.942 6.942 24 C -0.611 4.611 25 C -0.150 4.150 26 C -0.003 4.003 27 C -0.180 4.180 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.101 0.899 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.387 0.613 35 H 0.406 0.594 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.694 14.132 14.499 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.365 5.365 14 C 0.390 3.610 15 O -0.445 6.445 16 N -0.344 5.344 17 C 0.144 3.856 18 C -0.166 4.166 19 C -0.023 4.023 20 C -0.781 4.781 21 S 2.681 3.319 22 O -0.936 6.936 23 O -0.939 6.939 24 C -0.740 4.740 25 C -0.209 4.209 26 C -0.023 4.023 27 C -0.202 4.202 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.119 0.881 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.219 0.781 35 H 0.241 0.759 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.159 0.841 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.049 13.572 13.179 22.981 hybrid contribution 2.657 -0.026 0.804 2.776 sum -10.392 13.546 13.982 22.068 Atomic orbital electron populations 1.21821 0.98216 0.98080 1.01231 1.21971 0.92698 0.99782 1.02350 1.18774 0.94137 0.88957 0.79694 0.93094 1.21148 0.90486 1.39478 1.06452 0.92125 1.24881 0.98703 0.94707 0.95324 1.69882 1.35313 1.37258 1.09280 0.86487 0.84648 0.78315 0.77512 1.20161 1.21071 1.20187 1.45898 1.12741 1.58418 1.19438 1.16143 0.83799 0.78892 0.82130 1.90938 1.51556 1.64083 1.37949 1.43147 1.20054 1.55633 1.15563 1.17881 0.85065 0.88263 0.94362 1.21430 0.97708 0.97674 0.99788 1.20796 0.92218 0.94000 0.95237 1.30211 1.24953 1.21708 1.01249 1.05244 0.74855 0.76900 0.74887 1.93573 1.77667 1.86501 1.35815 1.93554 1.70304 1.71858 1.58179 1.30229 1.08714 1.21994 1.13089 1.21561 0.94485 1.01072 1.03737 1.20611 0.93354 0.91587 0.96732 1.20946 0.96305 1.05070 0.97923 0.94448 0.93064 0.95844 0.88136 0.95044 0.92372 0.78095 0.75881 0.83283 0.84067 0.84725 0.84612 0.89879 0.90764 0.90832 0.84147 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.86 2.24 -69.08 -0.15 6.71 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.57 8.73 -34.44 -0.30 -13.87 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.99 11.29 55.43 0.63 -23.36 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.71 -13.73 5.03 -59.81 -0.30 -14.03 16 14 C 0.69 12.82 6.87 -86.92 -0.60 12.22 16 15 O -0.57 -12.58 11.17 5.29 0.06 -12.52 16 16 N -0.70 -9.66 5.35 -14.22 -0.08 -9.73 16 17 C 0.24 3.35 6.28 -83.69 -0.53 2.83 16 18 C -0.14 -2.14 8.65 -39.39 -0.34 -2.48 16 19 C 0.00 -0.03 9.46 -39.61 -0.37 -0.41 16 20 C -0.69 -7.78 5.66 -39.55 -0.22 -8.00 16 21 S 2.50 24.43 5.16 -107.50 -0.55 23.87 16 22 O -0.94 -12.27 17.12 -57.54 -0.98 -13.25 16 23 O -0.94 -11.59 17.12 -57.54 -0.98 -12.57 16 24 C -0.61 -3.34 6.70 37.15 0.25 -3.09 16 25 C -0.15 -0.77 9.92 37.15 0.37 -0.40 16 26 C 0.00 -0.03 9.46 -39.61 -0.37 -0.41 16 27 C -0.18 -2.01 9.96 -39.39 -0.39 -2.40 16 28 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 29 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.39 6.28 8.56 -40.82 -0.35 5.93 16 35 H 0.41 4.11 8.83 -40.82 -0.36 3.75 16 36 H 0.15 2.50 6.42 -52.49 -0.34 2.16 16 37 H 0.14 1.56 7.57 -52.48 -0.40 1.16 16 38 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.30 8.14 -51.92 -0.42 -0.13 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.14 1.15 7.56 -52.49 -0.40 0.75 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -34.38 373.34 -10.37 -44.75 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.17 Total: 9.79 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.59 Total: -13.54 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.25 Total: -47.13 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.91 Total: -38.35 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 24.43 SS G_CDS: -0.55 Total: 23.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.38 -10.37 -44.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157017311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.495 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds