Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47349 * 2 1 4 4 H 1.09000 * 109.47100 * 304.99833 * 3 2 1 5 5 C 1.50694 * 109.47107 * 184.99593 * 3 2 1 6 6 H 1.08000 * 120.00307 * 240.00029 * 5 3 2 7 7 C 1.37876 * 120.00021 * 60.00131 * 5 3 2 8 8 N 1.31522 * 119.99891 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00158 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46793 * 60.00159 * 9 7 5 11 11 H 1.48498 * 109.46851 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46770 * 300.00055 * 9 7 5 13 13 N 1.46504 * 109.46802 * 64.99825 * 3 2 1 14 14 C 1.34777 * 119.99743 * 274.99921 * 13 3 2 15 15 O 1.21582 * 120.00261 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99582 * 180.02562 * 14 13 3 17 17 C 1.39943 * 119.99832 * 174.68581 * 16 14 13 18 18 C 1.38867 * 120.07049 * 326.56739 * 17 16 14 19 19 C 1.38115 * 119.92495 * 179.76624 * 18 17 16 20 20 C 1.38273 * 120.07351 * 0.50955 * 19 18 17 21 21 S 1.76202 * 119.93025 * 179.71880 * 20 19 18 22 22 O 1.42101 * 104.27526 * 26.09639 * 21 20 19 23 23 O 1.42101 * 104.27688 * 153.95048 * 21 20 19 24 24 C 1.81392 * 104.45282 * 270.02374 * 21 20 19 25 25 C 1.52991 * 109.47318 * 180.02562 * 24 21 20 26 26 C 1.38286 * 120.14030 * 359.74488 * 20 19 18 27 27 C 1.38115 * 120.06906 * 359.97438 * 26 20 19 28 28 H 1.08996 * 109.47539 * 300.00174 * 1 2 3 29 29 H 1.09001 * 109.46691 * 60.00376 * 1 2 3 30 30 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47367 * 239.99621 * 2 1 3 32 32 H 1.09000 * 109.46707 * 120.00175 * 2 1 3 33 33 H 0.97001 * 120.00139 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00155 * 94.99943 * 13 3 2 35 35 H 0.97002 * 120.00248 * 354.69117 * 16 14 13 36 36 H 1.07997 * 120.03552 * 359.97438 * 18 17 16 37 37 H 1.08007 * 119.95987 * 180.25461 * 19 18 17 38 38 H 1.09005 * 109.47084 * 299.99879 * 24 21 20 39 39 H 1.08997 * 109.47386 * 59.99995 * 24 21 20 40 40 H 1.09009 * 109.47528 * 179.97438 * 25 24 21 41 41 H 1.09001 * 109.47520 * 300.00018 * 25 24 21 42 42 H 1.09007 * 109.47499 * 59.99921 * 25 24 21 43 43 H 1.07996 * 119.96612 * 179.97438 * 26 20 19 44 44 H 1.07994 * 120.03502 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8811 -1.3816 10 1 6.5975 0.1470 -0.2346 11 1 6.3978 0.2175 -2.6507 12 1 6.4995 2.2813 -1.3819 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3411 2.6327 0.4317 16 7 0.0788 3.2673 2.5184 17 6 -1.1389 3.9519 2.6020 18 6 -1.6429 4.6137 1.4900 19 6 -2.8473 5.2843 1.5746 20 6 -3.5460 5.3061 2.7676 21 16 -5.0786 6.1691 2.8733 22 8 -5.5763 6.1635 1.5423 23 8 -5.7795 5.5117 3.9202 24 6 -4.6178 7.8506 3.3735 25 6 -5.8783 8.7081 3.5016 26 6 -3.0443 4.6525 3.8782 27 6 -1.8432 3.9752 3.7986 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0605 -2.9502 34 1 2.2719 2.1231 1.9978 35 1 0.6663 3.2269 3.2891 36 1 -1.0953 4.6012 0.5593 37 1 -3.2418 5.7958 0.7090 38 1 -4.1034 7.8159 4.3339 39 1 -3.9573 8.2849 2.6231 40 1 -5.6015 9.7186 3.8027 41 1 -6.3932 8.7430 2.5415 42 1 -6.5386 8.2738 4.2524 43 1 -3.5921 4.6717 4.8087 44 1 -1.4517 3.4653 4.6663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157017311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -100.957523 kcal Electronic energy + Delta-G solvation = -27064.905541 eV Core-core repulsion = 23108.652117 eV Total energy + Delta-G solvation = -3956.253423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76012 -39.87132 -38.11391 -37.26571 -36.94390 -35.80002 -34.35803 -33.97734 -32.84686 -32.06271 -30.74765 -28.80452 -25.37978 -24.89860 -24.26870 -23.80483 -22.24592 -21.40506 -19.97675 -19.86276 -19.10753 -18.52670 -17.89074 -17.27672 -17.13211 -16.94994 -16.60069 -16.04589 -15.81692 -15.48893 -15.14591 -15.04241 -14.61424 -14.54364 -14.39632 -14.28652 -13.99625 -13.78961 -13.53918 -13.33238 -13.19024 -13.13188 -13.02657 -12.91047 -12.66689 -12.48168 -12.33091 -12.21242 -12.09348 -12.01154 -11.68496 -11.54179 -11.37007 -11.12011 -11.03401 -10.54646 -10.05804 -9.80541 -9.33304 -8.16910 -6.34333 -0.86212 -0.20354 0.31097 1.44904 1.46767 1.54195 1.64580 1.95625 2.06352 2.41135 2.55839 3.02530 3.12803 3.20083 3.37210 3.77304 3.78627 3.91345 3.98357 4.28216 4.40428 4.45697 4.47053 4.49169 4.54549 4.72487 4.79671 4.83209 4.91124 4.94486 5.02883 5.10607 5.16594 5.18318 5.25984 5.38896 5.42204 5.50902 5.58637 5.71449 5.83409 5.89562 6.14369 6.20583 6.73134 7.17207 7.33716 7.63054 8.88275 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027671 B = 0.002162 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.649302 B =12946.129974 C =13050.509082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.296 3.704 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.711 5.711 14 C 0.691 3.309 15 O -0.609 6.609 16 N -0.678 5.678 17 C 0.218 3.782 18 C -0.169 4.169 19 C -0.013 4.013 20 C -0.688 4.688 21 S 2.500 3.500 22 O -0.981 6.981 23 O -0.970 6.970 24 C -0.580 4.580 25 C -0.165 4.165 26 C -0.004 4.004 27 C -0.167 4.167 28 H 0.040 0.960 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.426 0.574 36 H 0.117 0.883 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.172 0.828 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.322 15.591 17.885 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.363 5.363 14 C 0.392 3.608 15 O -0.488 6.488 16 N -0.327 5.327 17 C 0.120 3.880 18 C -0.191 4.191 19 C -0.033 4.033 20 C -0.776 4.776 21 S 2.684 3.316 22 O -0.978 6.978 23 O -0.967 6.967 24 C -0.713 4.713 25 C -0.224 4.224 26 C -0.024 4.024 27 C -0.189 4.189 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.265 0.735 36 H 0.135 0.865 37 H 0.164 0.836 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.126 0.874 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.189 0.811 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.674 15.008 16.629 25.737 hybrid contribution 2.394 -0.317 -0.188 2.422 sum -10.280 14.691 16.442 24.328 Atomic orbital electron populations 1.21647 0.97197 0.98896 1.00084 1.21815 0.93474 0.99348 1.01419 1.18294 0.93557 0.88778 0.80115 0.98177 1.21511 0.91183 1.39099 1.06793 0.90816 1.25762 1.03274 0.94382 0.95032 1.70045 1.37155 1.38211 1.09822 0.85419 0.79095 0.78415 0.77518 1.18876 1.21401 1.19677 1.45461 1.13602 1.58643 1.18595 1.16205 0.83063 0.78707 0.82861 1.90924 1.52616 1.65384 1.39891 1.42715 1.20615 1.54754 1.14577 1.18077 0.85425 0.89193 0.95263 1.21316 0.98798 0.99664 0.99306 1.20876 0.91817 0.94171 0.96397 1.30506 1.24853 1.21471 1.00747 1.05266 0.73967 0.78689 0.73657 1.93521 1.78444 1.87806 1.38070 1.93512 1.70893 1.74079 1.58246 1.30006 1.09630 1.16481 1.15195 1.21780 0.94318 1.02234 1.04029 1.21072 0.93202 0.90464 0.97623 1.21284 0.95829 1.04117 0.97625 0.94093 0.95661 0.93867 0.90886 0.93908 0.92574 0.76111 0.73522 0.86458 0.83564 0.81582 0.82526 0.87362 0.91027 0.90419 0.81095 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.51 71.98 0.61 -4.87 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.71 16 3 C 0.30 14.68 2.24 44.24 0.10 14.78 16 4 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 5 C -0.55 -27.88 8.73 25.60 0.22 -27.66 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.91 -51.39 11.29 21.45 0.24 -51.15 16 9 Si 0.97 40.97 29.54 68.60 2.03 42.99 16 10 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 13 N -0.71 -27.55 5.03 -461.42 -2.32 -29.87 16 14 C 0.69 26.19 6.87 179.05 1.23 27.42 16 15 O -0.61 -28.38 11.17 -3.97 -0.04 -28.42 16 16 N -0.68 -18.29 5.35 -317.18 -1.70 -19.98 16 17 C 0.22 5.87 6.28 38.15 0.24 6.11 16 18 C -0.17 -5.22 8.65 22.39 0.19 -5.02 16 19 C -0.01 -0.34 9.46 22.25 0.21 -0.13 16 20 C -0.69 -14.57 5.66 22.29 0.13 -14.45 16 21 S 2.50 45.34 5.16 -56.49 -0.29 45.05 16 22 O -0.98 -25.79 17.12 -127.65 -2.19 -27.98 16 23 O -0.97 -22.38 17.12 -127.65 -2.19 -24.57 16 24 C -0.58 -4.23 6.70 71.98 0.48 -3.75 16 25 C -0.17 -1.15 9.92 71.98 0.71 -0.43 16 26 C 0.00 -0.08 9.46 22.25 0.21 0.13 16 27 C -0.17 -3.28 9.96 22.39 0.22 -3.05 16 28 H 0.04 1.80 5.65 -2.39 -0.01 1.79 16 29 H 0.02 1.23 7.84 -2.39 -0.02 1.22 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 3.97 5.95 -2.38 -0.01 3.96 16 32 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.40 12.72 8.56 -92.71 -0.79 11.93 16 35 H 0.43 7.76 8.83 -92.71 -0.82 6.94 16 36 H 0.12 4.32 6.42 -2.91 -0.02 4.31 16 37 H 0.15 3.44 7.57 -2.91 -0.02 3.42 16 38 H 0.17 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.16 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 41 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.17 2.11 7.56 -2.91 -0.02 2.09 16 44 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -78.85 373.34 -1.85 -80.69 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.57 Total: 28.59 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.18 Total: -15.36 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.77 Total: -100.99 kcal Atomic # 8 Polarization: -76.55 SS G_CDS: -4.41 Total: -80.97 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 45.34 SS G_CDS: -0.29 Total: 45.05 kcal Total: -78.85 -1.85 -80.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157017311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.266 kcal (2) G-P(sol) polarization free energy of solvation -78.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds